G2138897


Basic Information

Item Value
gene id G2138897
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 43529263 ~ 43571301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2446372
gtattgagaaacttttgttattgaacaAATAattgttttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctgaattttctttctcattttgtctgtcatagttgaagtgtccctatgatgcaaattacaggcctctctcatctttttaagtgggagaacttgtacaattgatggctgactaaatactttttttgccccactgtatattattatagaccagttagatctactgcctattttatattatgaaagaccagcctGATCtgctgtctcaattatattatcaAAGAcaagctagatgtactgtctctatcattttatgacagaccagctacatctactgcctcttttatattatgacagaccagcaagatctactttcTCAATTATAttttggcagaccagctagatctactaatTCACTTTTcatatggcagaccagctagatctactgtctgaatTATATTACGATAGACCaggtagaactactgtctctattattttatgacagaccagctacatctactgcctctgttatattatgacaggccagctagaacTACTTTCTCTTTTAAactatgagagaccagctagatctactgtctcaattattttTTGACAGACTATCTAGATCAACTGcttctcttatattatgacagaccagcttgatctactgcctattttatattattaaagccaagcaagatctactgtctcaattatattatggcggACCAGCTAGAACTACAGTCTCAATTCTACtacgaaagaccagctagatttactgtctcaattatttcatgacagaccagctacatctaaaACCTGTTTAACATtttgacaaaccagctagatttactttctcaattatattatggcagaccagctagatctactctctcaattatattaaggcagaccagctagatctactgtctcaattatattacgatagaacagctagaactactgtctcttttataatatgacagaccagctagatctactgtctcacttattttatgacagactagctagattagggttagggttgggttagggttagggttagagacagtaaatctagctggtctttcgtaatataattgagacagtagttcaagctggtctgtcataatataattgagacagtagatctagctggtctgtcataatataatagagacagtagttcaagctggtctttcataatataattgagacaaaagatctagctggtctgcaataatataattgagatagttgatctagctggtctgtcataatttcatagagacagtaaatctagctggtctttcttagcataatagagacagtagatctagctggtctgtcataatataatagagaccgtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagatggtctgtcataatataatagagacattagatctagctggtctggcataaaatagagacagtagatctagctggtctgtcataatataataagagacagACACTAGACAGATAGCTGCTTACCTACTTGCCTCAGTAGGGTACATGGATGAAAACAAAGATAATATGATAACTTAACATTGTTTGTCATTTAAAGTGGTGGCTTTTCGGAAGATAATTAAGTTATATTGTACCCTGATCTGTGATCTGTATGTGCTTTAGTCAACTCCTACTTTTGCCTACATACTGTAGGTTTGCATGACCAGGCTCACTATGGTAGGTGGGTATGTAAAAACTAAAACAGCGTAGAAACCATGCATAAAAGAAAGACAATGCCCTGAAACACAAACAATGGCTACCTGTTTGTTTGCATGTGGATCAAATATAACACCAAGGATAAGTACACATTCAGCTTTGGGAGTATTACAAGGTAAAGCAGCATGATTGTCCAAAGAGTAACTTTCACCAGGATAGATAAATATGTAATAGTTGTTGCTTGGCTATAGGAAAGATCCATGTCTGATAGTGGCATACATCAACATGCATAGCCTGGGAGAACAGGTATGTATACTCACATACTCCCACACTTCTCTTACCATGAAATAGCATAACGTTAAGATATCCAAACCTAAAATGTATGCTTGAAATAAAACCT
>TU2446374
atagatgtagctggtctgtcataatatcatatagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctggcataatataataatgacatagagacagtagatctagctggtatgtcataatataatagaggcagtagatctagctggtctgtcataatatcatatagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctggcataatataataatgacatagagacagtagatctagctggccatTTATAATATAAttgtgacagtagatctagctggtgtgtcataatataatagatacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctttcctaatataatatagacagtatatctagctggtgtgtcataatataatagatacagtagatctaacaggtctgtcataatataatagagacatagagacagtagatctagctggtgtgtcataatataatagaggcagtagatctagctggtctgtcataatataatagaaacagtatatctagctggtgtgtcataatataatagatacagtagatctagctggtctgtctcagtattattgagacagtagatctagctggtctgtcataatataaaagagacagtagatctagctggtctgtcataatataataaatacaggctctagcttgtctgttataatataaaagagacagtagatctagctggtctgtcataatataaaagagacagtagatctagctggtctgtcataatatcataaaTACAGGCTCTAgcttgtctgttataatataaaagagacagtagatctagctggtctgtcgtaatatgaTAGATACAGTAAATCTAGGTGGtatttcataatataattgagacagtatatctagctggtctgtcctattataatagagacagtagatctagttggtctgtcataacataatagagacagtagatctagctggtctgtcataatataataaatacatgctctagcttgtctgttataacataaaagagacagtagatgtagctggtctgtcataaaataataaagacagtagatctagctggtctgtcgtaatatgatagatacagtaaatctagctggtctgtcataatataataaatgcATGCTCTAGCTTGTCTGTTATAGTAGTATAGCAGTGTTATATAGTATAGTAAATCTAGGTGGtgtttcataatataattgagacagtagatctagcttgtgtgtcataatataatagatacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaattataatagagaccgtagatctagctggtctgtcataatataatagagacagtagatctagctggtctggcataatataataatgacctagagacagtagatctagctggtatgtcataatatagtagaggcagtagatctagctggtctttcataatataatagagacagtatatctagctggtgtgtcaaattattatagagacagtatatctagctggtgtgtcataatataatagatacagtagatctagctggtctgtcataatatcatagagacagtagatctaggccgtctgtcatgatacaatagagacactagatctaacTGGTtattcataatataattgagacagaagttctagctggtctgtcaaaatataatatagacattagatctagctggtctgtcatattataatagagacagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctggcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagatggtctgtcataatataatagagacattagatctagctggtctggcataaaatagagacagtagatctagctggtctgtcataatataataagagacagACACTAGACAGATAGCTGCTTACCTACTTGCCTCAGTAGGGTACATGGATGAAAACAAAGATAATATGATAACTTAACATTGTTTGTCATTTAAAGTGGTGGCTTTTCGGAAGATAATTAAGTTATATTGTACCCTGATCTGTGATCTGTATGTGCTTTAGTCAACTCCTACTTTTGCCTACATACTGTAGGTTTGCATGACCAGGCTCACTATGGTAGGTGGGTATGTAAAAACTAAAACAGCGTAGAAACCATGCATAAAAGAAAGACAATGCCCTGAAACACAAACAATGGCTACCTGTTTGTTTGCATGTGGATCAAATATAACACCAAGGATAAGTACACATTCAGCTTTGGGAGTATTACAAGGTAAAGCAGCATGATTGTCCAAAGAGTAACTTTCACCAGGATAGATAAATATGTAATAGTTGTTGCTTGGCTATAGGAAAGATCCATGTCTGATAGTGGCATACATCAACATGCATAGCCTGGGAGAACAGGTATGTATACTCACATACTCCCACACTTCTCTTACCATGAAATAGCATAACGTTAAGATATCCAAACCTAAAATGTATGCTTGAAATAAAACCT
>TU2446376
agacagtagatctagctggtttgtcataatataatagatacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagaggcagtagatctagctggtatttcgtaatataattgagactgtagtactagctggtctgtcataatataattgagacagtagatctagctggtctgcaataatataattgagaccgtagatctagctggtctgtcataatttcacagagacagtaaatctagctagTCTTTcttactataatagagacagtagatctagctggtctgtcataatataatagagatcgtagatctagctggtctgtcataatataatttaggctgtagatctagctggtcttccataatataattgagacagtagttccagctggtctgtcatactagaAAAGAggcagtaaatctagctggtcattcataatataataaagacatgctctagcttgtctgtcataatataattgagacagtagatctagcttgtctgcaataatataattgagacagtagatatagctggtctttcatattgtaaaagaggcagtagatctagctggtctgtcataatataaaagatgcagtagatctagaaggtctgtcataaaatacttgagacagtagatctagctggtctgtcataatttcatAGAGTCAggaaatctagctggtctttcataatataattgagacagaagttctagctggtctgtcaaaatataatatatacattagatctagctggtctgtcatattataatagagacagtaaatctagctggtctgccataatataattgagacagcagatctagctggtctggtataatataataatgacatagagacagtagatctagctggtatgtcataatatgatagagacagtagatctagctggtctgtcctattataatagagacagtagatctagctggtctgtcataacataatagagacagtagatctagctggtctggcataatataattgagacaggaGACCTAGCTCGTCTCTCattatataaaagaggcagtagatctagctggtctgtcataatttcatagagacagtaaatctagctggtctgtcataatataataaatgcTTGCTCTAGCTTGTctgttatagtagtatagtagtgttaTATAGTATATTAAATCTAGGTGGtgtttcataatataattgagacagtagatctagcttgtgtgtcataatataatagatacagtagatctagctggtctgtcataatatagtagagacagtagatctagctggtctgtcataatataatagagacagtatatctagctagtgtgtcataatataatagatacaatagatctagctggtctgtcataatgtcatatagacagtagatctagctcgtctgtcatgatacaatagagacagtagatctagctggtctttcataatataattgagacagaagttctagctggtctgtcaaaatataatatagacattagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagactgtagatctagctggtctgtcataatagaatagagacagtagatctagctggtctgtcatattataatagagactgtagatctagctggtctgtgatattataatagagtctgtagatctagctggtctgtcataatataatagagagagtagatctaactggtctgtcataatataatagaggcattagatctagctgatctgtcataatataatagagacagtagatctagctggtctggcataaaatagagacagtagatctagcttgtctgtcataatataatagagacagtcgatctagctggtctgtcataatataatagagacagtcgatctagctggtctgtcataatataagagacaTGCATAACTTAAATCAACAAACATGTCTGATCAACAGCTGTGGGCTCATCTCGAGGCAGACTTTAGGGTAAACATTGTTTAAATGAAGATAACATAACGAGACTCCCAAATGATACCAAACACTAGACAGATAGCTGCTTACCTACTTGCCTCAGTAGGGTACATGGATGAAAACAAAGATAATATGATAACTTAACATTGTTTGTCATTTAAAGTGGTGGCTTTTCGGAAGATAATTAAGTTATATTGTACCCTGATCTGTGATCTGTATGTGCTTTAGTCAACTCCTACTTTTGCCTACATACTGTAGGTTTGCATGACCAGGCTCACTATGGTAGGTGGGTATGTAAAAACTAAAACAGCGTAGAAACCATGCATAAAAGAAAGACAATGCCCTGAAACACAAACAATGGCTACCTGTTTGTTTGCATGTGGATCAAATATAACACCAAGGATAAGTACACATTCAGCTTTGGGAGTATTACAAGGTAAAGCAGCATGATTGTCCAAAGAGTAACTTTCACCAGGATAGATAAATATGTAATAGTTGTTGCTTGGCTATAGGAAAGATCCATGTCTGATAGTGGCATACATCAACATGCATAGCCTGGGAGAACAGGTATGTATACTCACATACTCCCACACTTCTCTTACCATGAAATAGCATAACGTTAAGATATCCAAACCTAAAATGTATGCTTGAAATAAAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2446372 False 2170 lncRNA 0.36 4 43529263 43571301
TU2446374 False 2627 lncRNA 0.35 5 43529263 43557613
TU2446376 True 2690 lncRNA 0.36 7 43529263 43569583

Neighbor

gene id symbol gene type direction distance location
emilin2a LOC106595984 coding downstream 131229 43343531 ~ 43398034 (-)
LOC118944838 LOC106596014 coding downstream 451803 43041222 ~ 43077460 (-)
LOC110509179 LOC105010334 coding downstream 541904 42973355 ~ 42987359 (-)
LOC110508296 pde1c coding downstream 569855 42877496 ~ 42959408 (-)
LOC110509177 LOC106597278 coding downstream 756426 42733643 ~ 42772837 (-)
G2138888 NA non-coding downstream 23342 43504126 ~ 43505921 (-)
G2138887 NA non-coding downstream 25686 43495715 ~ 43503577 (-)
G2138886 NA non-coding downstream 34148 43494868 ~ 43495115 (-)
G2138883 NA non-coding downstream 41019 43487975 ~ 43488244 (-)
G2138871 NA non-coding downstream 59826 43466780 ~ 43469437 (-)
G2138294 LOC106594920 other downstream 1177811 42349216 ~ 42351452 (-)
G2137814 LOC106597294 other downstream 1302298 42220922 ~ 42226965 (-)
G2137648 LOC106596196 other downstream 1715062 41810795 ~ 41814201 (-)
G2137555 NA other downstream 1792874 41731714 ~ 41736389 (-)

Expression


Co-expression Network