LOC110509492 (LOC106562836)


Basic Information

Item Value
gene id LOC110509492
gene name LOC106562836
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 425727 ~ 437447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590386.2
ttttgaacatTTCCGAAATTCCGTGACACGGAAGTACTTTTTTCCCTCCAATGAAGAGACATACTTTCCGGAGCAAAGTCAAATTTGCTGCAAATTGACCTCCCTAGCCTTCTCATCTGAAAGAACGACCTCTTTACAAAATCATGCCGTTCATTGATTTAGAAAGTAATTTACCTGAGAGTACGTTTTCTGAGGATTTCTTGAAAAAGCTGTGCTCCAAAACAGCCGCTGTTCTAGGGAAACACGAAGAGAGAATGATGCTGGTGGTGAAACCAGGACTGCCAATGCTCATGGGTGGAACTTGTGCTCCTTGCGTGATACTGTCCGTGTCCGCCATCGGTGTCACTGACACTGCTgagaagaacaaggaacacagtGCCAATATCTTCCCTTTCCTTACAGGAGAACTTGGACTTACTGAAGACCGGGTCATGATTAGGTTCTATGTCCTGGAGCCACATCAGGTTGGAAAGAAAGGAACTGTTATGAGTTACCTGTAGGAGGAACTTTCTGCACCAGAATGACTTCACACATCTGTTCCACAACAGTTACCAAACCCCGGCAGTGGGTTTCCACCACTCAATTGGACATGACATACCATATGACAAAGACCTGTATTGGATTTTATCACTATGGTATTTGACCCCGTGAATCTATGTCCTGGAAATGCATTCATTTATATTGCGACAGTAAACCAGAACCTCACATTTGACAAGCTAGATGATATAAGAATATATTCATGTTTGATTAGAGGAAATGTAAACCAATTGACCTTTTTTCAAAGCTATTACTATGTAAGTTCATCTATTCATGTCATATCTCAACCATCTGATAATGTGGTTGAGATGTTTTTTTCTGCTATGTTTTGTTAGTAAGAACCACAATGACTAGCATAGATGATGGACTAGTATTAACAGTAAATCTTTAAGTACGTACTGTGCAATGGAATTCAGGTAAATGTCAATGGCCGCTGTGAAACACCATTCTATGCATTTGTTAAGAGTATAGAAGTAGATAAGGACATAACAGTGTTGCATTAACTAACATGCACTCTGTATTTGTGAAGGACTATGCTTAGTAAATTGACATGTAATATATTCCTTTCAATTTCAGTCCTTTTAATATATGAGTATCAAGTAAATGTTGTGAAGGCTTTGCTGTACTGGATaacttatttgtattgcttttaatctttttaaatgaatatcttattaacactttgttctagctagctatttgtgtaggtagctatcaagtaaacccaaTGATAATAGTGTAGGTGATAATgataatagtatatatatttaaGAAGTGTCTAGTCATACTAGAAGTAAAAGTACTTAAATTATTGTGTCCCGCATGACTAAATTATTTACTGGATTTAATGTCTTGCCAATATTTCTTTACACTCAACACGAAGAGTGGAAGGGTTTTAAAATAATACAAGGTGCAAATGTGACATTGAATGTAAAACCAATGTAAAAATGTAGCTATCTTTCCATGTGATACAGCCCACtgaaggcaacaaaaaaaataaacatttaggaTGTGTGCTTTCTGTCCATACATTATTGTTCG
>TU2447463
tctcagAGAGATGAGGGAACTTAGAGATAATTGTGGGGTACAGAGgtaaggtagtcattcaaaaataattttaaacacttactgcacacagtgagtccattcAACTTATTATATGACATGTTAAACACAGTTTTACTCCTGTACTTATGCCTCATgccgtaacaaaggggttgaatacttgtaaaaatgtctaaaaacataattccactttgacatcagggggtattgtgtgtaggccagtggcaCAAAATCTCAACTTAATCAATTttaatttcaggctgtaacacaacacaatgtggaaaaagtcaagggtgtgaatactttctgaaggcactatcgTTAGCGGCTATCAAGGTTTTAACTCCAGTGTCCATATTTAAATACTTAGATATAGCTTAGCTAGCTAATTCTATTCAAAAATGGTGCTTGTGTGTATTTTATGTTGTCTGTTTTCCATGCAGAGAATGATGCTGGTGGTGAAACCAGGACTGCCAATGCTCATGGGTGGAACTTGTGCTCCTTGCGTGATACTGTCCGTGTCCGCCATCGGTGTCACTGACACTGCTgagaagaacaaggaacacagtGCCAATATCTTCCCTTTCCTTACAGGAGAACTTGGACTTACTGAAGACCGGGTCATGATTAGGTTCTATGTCCTGGAGCCACATCAGGTTGGAAAGAAAGGAACTGTTATGAGTTACCTGTAGGAGGAACTTTCTGCACCAGAATGACTTCACACATCTGTTCCACAACAGTTACCAAACCCCGGCAGTGGGTTTCCACCACTCAATTGGACATGACATACCATATGACAAAGACCTGTATTGGATTTTATCACTATGGTATTTGACCCCGTGAATCTATGTCCTGGAAATGCATTCATTTATATTGCGACAGTAAACCAGAACCTCACATTTGACAAGCTAGATGATATAAGAATATATTCATGTTTGATTAGAGGAAATGTAAACCAATTGACCTTTTTTCAAAGCTATTACTATGTAAGTTCATCTATTCATGTCATATCTCAACCATCTGATAATGTGGTTGAGATGTTTTTTTCTGCTATGTTTTGTTAGTAAGAACCACAATGACTAGCATAGATGATGGACTAGTATTAACAGTAAATCTTTAAGTACGTACTGTGCAATGGAATTCAGGTAAATGTCAATGGCCGCTGTGAAACACCATTCTATGCATTTGTTAAGAGTATAGAAGTAGATAAGGACATAACAGTGTTGCATTAACTAACATGCACTCTGTATTTGTGAAGGACTATGCTTAGTAAATTGACATGTAATATATTCCTTTCAATTTCAGTCCTTTTAATATATGAGTATCAAGTAAATGTTGTGAAGGCTTTGCTGTACTGGATaacttatttgtattgcttttaatctttttaaatgaatatcttattaacactttgttctagctagctatttgtgtaggtagctatcaagtaaacccaaTGATAATAGTGTAGGTGATAATgataatagtatatatatttaaGAAGTGTCTAGTCATACTAGAAGTAAAAGTACTTAAATTATTGTGTCCCGCATGACTAAATTATTTACTGGATTTAATGTCTTGCCAATATTTCTTTACACTCAACACGAAGAGTGGAAGGGTTTTAAAATAATACAAGGTGCAAATGTGACATTGAATGTAAAACCAATGTAAAAATGTAGCTATCTTTCCATGTGATACAGCCCACtgaaggcaacaaaaaaaa
>TU2447461
AGTCAAATTTGCTGCAAATTGACCTCCCTAGCCTTCTCATCTGAAAGAACGACCTCTTTACAAAATCATGCCGTTCATTGATTTAGAAAGTAATTTACCTGAGAGTACGTTTTCTGAGGATTTCTTGAAAAAGCTGTGCTCCAAAACAGCCGCTGTTCTAGGGAAACACGAAGAGACCCCCCTCACAGAAAGAATGGATCATCCTCATGTTAGTCAAGGCTCTCTATGGCAGGTTCAGCAACTGATGGAGCTGACTTAAATTAGTAAGCAGCTGATGTGCCAAAAAGCCACAAAACATTATCAGCCAGCTGGTGCTCATAGCAAGCCTCACCAGACCGCTTCAGTCCATATCGAATGTACAGGATGGAGTTAAGGGTCTGCAAGGACATCCGATTTTCTAAGTTTGCTTTTTACCACACTCATCTGGCTAAATACTCTCTCGACTTCAGCATTCGAGTGTGGCAaggacaacacagacacagcagccaTGGCAAGTTCTTGAAACGGGTTGATATCAGCTGCACCCCTGAACTTCCAAATCTCACTCCAGAAGCCCAGTGTGTTGTTTGTCTCATTCCATTTACTAAGATGGATGGCACGCCATTGCTGGACCATCTT

Function

NR:

description
PREDICTED: up-regulator of cell proliferation-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590386.2 False 1578 mRNA 0.37 3 425727 437447
TU2447463 False 1744 TUCP 0.36 2 425771 428072
TU2447461 True 618 lncRNA 0.45 2 436032 437371
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Neighbor

gene id symbol gene type direction distance location
LOC110509490 LOC106562833 coding downstream 371 398511 ~ 425356 (-)
LOC110509489 LOC106562832 coding downstream 48416 309563 ~ 377311 (-)
LOC110509487 LOC106570480 coding downstream 212703 168398 ~ 213024 (-)
LOC110509493 pkn3 coding upstream 8773 446220 ~ 456501 (-)
LOC110509494 LOC106562837 coding upstream 45179 482626 ~ 527732 (-)
LOC110509500 nup188 coding upstream 284522 721969 ~ 726945 (-)
LOC110509497 LOC106562842 coding upstream 288893 726340 ~ 801526 (-)
LOC110509502 LOC106562868 coding upstream 406301 843748 ~ 937986 (-)
G2139810 NA non-coding downstream 41889 383618 ~ 383838 (-)
G2139784 NA non-coding downstream 95003 330168 ~ 330724 (-)
G2139765 set non-coding downstream 131654 283933 ~ 294073 (-)
G2139683 LOC107576698 non-coding downstream 283637 141278 ~ 142090 (-)
G2139618 NA non-coding downstream 374694 39672 ~ 51033 (-)
G2139878 NA non-coding upstream 38672 476119 ~ 476800 (-)
G2139926 NA non-coding upstream 103254 540701 ~ 545694 (-)
G2139960 LOC107681197 non-coding upstream 155329 592776 ~ 593010 (-)
G2139961 NA non-coding upstream 155872 593319 ~ 593630 (-)
G2139807 LOC106602244 other downstream 47240 378211 ~ 378487 (-)
G2141258 NA other upstream 1160574 1598021 ~ 1613209 (-)
G2141289 LOC100380853 other upstream 1211852 1649299 ~ 1649731 (-)
LOC110509525 LOC106562824 other upstream 2881496 3317596 ~ 3324117 (-)
G2143134 NA other upstream 3190718 3628165 ~ 3635240 (-)
LOC110509492 LOC106562836 other downstream 7960 425727 ~ 437447 (-)

Expression

LOC110509492(LOC106562836) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110509492(LOC106562836) Expression in each Bioproject

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LOC110509492(LOC106562836) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network