LOC110509491 (LOC106562835)


Basic Information

Item Value
gene id LOC110509491
gene name LOC106562835
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 438137 ~ 444982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590385.2
GGCACGCCAGCAACCCTGGACAATAATATTGCAGCCCTTCAGAGACGTTCTGGTCATATTTATTAGAGCGGAAATGATTGAATGCTATTTTGGTGATTAGGAATAAATGTAGCTAGCACACTAGTTTTAAGGTTGTATGTGTCTAACCAGCAAGCTTGGCATGTTAATTTCGGAATTTAGTTCATGTTAGACCATTCCAGTCGCCATTTGGAGAGAAACCTCGAGCTGTTGGGTTAGTTGGCAAGATAACTGGATACAGTAACGCTGACCGCTAGCTACGGTTATGTGGGACGATAGTGATAAAGGCTAGTTAGCTAAATGCATTTTGTTAGCTAACTATAGTAGGCCAGTTCTCGTAACCTGATGCATACCGGTACCAGTCTATTGCTACGTGTTGAAAAATGCTAGGATGTTCAAAAATGTGTTCGGGTCAGGATTTATTGTAAGAACCGCGCACGTTATCCTGACATGGGTAATAACACTGATACTCTTCCTACATGATACAGACCTGAGGAagcaagaggagaggggagagctCATCCAACCTGTGCTCTTTGTCTTGCTGGTCCTTGTGTCGGTGTTGCTGTACTTTGCTGTCTCACTCATGGATCCTGGCTTTGTCCTATCTGACGGTAGTGACTTACAGTTCACCCTTGGCATCGCTGAGGAGACGCAGGACATGATTCCCCCAACAACCAAGTCTCTGCGACAGCGGCGCTGTGGTCATTGTCTGCTCCAGCAGCCAATGAGATCCAAGCACTGTCAGACCTGTCAGCACTGCGTGCGTCGCTACGACCACCACTGCCCCTGGATCGAGAACTGCGTGGGTGAGAGGAACCACCGCTGGTTCGTGCTCTACCTGGCTGTCCAGCTGTTGGTGCTGCTGTGGGGCCTCCACATGGCCTGGTCGGGCTTCACCACGGCACCCACCTGGCAGCTGTGGCTGCGCGGCAATGGCGTGCTGCTGGGTACAGTGGCGGTGGTGGCGGTGCTCTCCCTCACCGTGCTCCTACTCCTGGGCTCCCACCTCTACCTAGTCTCCCTCAACACCACCACCTGGGAGTTCATGTCGCGCCACCGCATCTCCTACCTCAAGCACTGCGGCTCTGAAGAGAACCCGTTTGACCGTGGTGCGCTGCGCAACCTCTGGGGCTTCTTCTGCAACTGGGGCGCCATAGTGTGGGAACAGGTGTACTTCAGAGAGGGCAACGACCCCATCTGATTAGCAAACAAGCTAACTAACTCGTCGTCTACTCAAGTTCTTCATTCCTTCCCTAGAATTCCCTAGAATTGAGTTTACATCCTCCTTTCTAGAAGTATCTTTATATGAGAAAGACATCCAAATGAACTATGAACTCCTCTCATTACTTCAGTTGGTCACTGAACTTTGCAAGTTCAGTTTAGTATGTAAGTGGATTTCAATGGAATTGAGCGCAATCCTggtatttatttcagttgactagTGACAtgataaaaaaacatttgtcaggAAGACAGGAAAAGTTTTACTGGAACAAATAGGTCAGCTATTCAGTCTTGGTAATAAAGGTAATTGCAGTGAGCCTGTGAATAGTAGCGCGATTCTTAGTGTTGCTCTGTTTATTTCCTATCCTTCCAACTTACCATTGCCTTTGACAACCACTACACTCCCACCCACTCCAATACCTTCTTCTGTCCAAAGAATAATATCTAAGAGTGAAGAGTAAAAAATATCACTGAAGTATTAGGAATTTGAGCTAAGGGAACTCTTATGTGTTGAAGGGAACACATTTACAGAATAGATCAATAAATCACATAATTCCTTGACAGTTAGATTAACAGAAAGGCAATTCACGTATGGCCTGTTTTTCTATTCCCTGAGTTTACTAAGCTATAACACACTATAAGCTAACTGTTGTTTTATACAGGATAAAGGTACTTTCATATACTATTGTTGATGTAAAACTGTCTATACTTGAGAGCATGATTTGATTCCTTGTTGGTGTATTTTCCCCAATATTGACTCGGCATTGACAGAGGCTCTGTAGCGACCAAGTGGCTGATTGACTCAGTCAATCAAGTCTTTAGGCTGTGTTTAAACATGCAGtttaattctgatcttttgcccaattatggGCCAAAGAtatgatctgattggtcagaagaccaattattggcaaaatatcagaattgggctacctGTGTTTACACAGCCTTAGATTTCCAGAAGAACATTCCTCTTAACCATTTGAGTATTTTTGCATATTGAAATATTGTTACAAATATCACATTTTCAATGCCTGGTTTACTGTAATAGTTTAGTTTAATTGAATCTGTACAAAAAGGAATGTCAGGTTTTAAGGCTGCACTACAGCTCAAAGCTTCCTGGCAACAGGGTTAATATGAAGGCAAAGGTCAGCCAAGTGTTGGCAAATTAATAAGTAAATAAAATGGTAATTCAGTTATCAATATATTTTTGGTAGTACCATGATCCGTCGACAAATTATTGCACCTCTTATAAAATGGTAGAGAGGCGTTTTATTTGCAATTGTATTATCTATTACTATAAAGTATAGTAAATGTGAAAAGCACACAATTTGCACCATCCGTGGTTTGAAAAAGGATCTGATCTTGGGTGAAACTCCAAACATGTTTAATCATTCACTTAAATCATTTCTCACTTTTTCAATTGACAGAATGTCATACTATTTTTGTAAACAGGTTTATCGCTCTTGATGCAAATCAACCTTTTTGAACGTCCATTTTGGAACATAAAAAGTTTGCATGAGATTTTTACATCTAGTTTTTTGTAACTTTAGGAATAATCGTAGAGAACTTATTTAAAGGAGTGCAATGTTGTGTGTGTTCCCTAACTTAATCGTTAGCTTATTCTCTGTGCAATAGGAGAGCATAGAAAAACATGACAGAAATGAGCAATAATGGTAATATTGTCATCTTTTTATAGTATCAGAAAATCTTTCTGGCTCTTCCAGTAGAATTTAAAGATAAGTGATgtgattttatatatatttgtttggTGATTTCAGTGTGAACTGTTTATGAACAAAGTAATTAATGCAATATTTTAGTTTTTAAGAAATTGTTTGAAATGCAGTAGACCTATCAATAAATTGAAATGTTTATTTCAGAAAAATG

Function

NR:

description
probable palmitoyltransferase ZDHHC12

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590385.2 True 3135 mRNA 0.41 5 438137 444982

Neighbor

gene id symbol gene type direction distance location
LOC110509488 set coding upstream 147111 287196 ~ 291026 (+)
LOC110509486 LOC106562830 coding upstream 288879 131779 ~ 149258 (+)
LOC110509485 LOC106562829 coding upstream 331338 71933 ~ 106799 (+)
LOC110509495 LOC106562838 coding downstream 83085 528067 ~ 530098 (+)
LOC110509291 LOC106562839 coding downstream 91276 536258 ~ 614583 (+)
LOC100305272 dpm2 coding downstream 174807 619789 ~ 629216 (+)
LOC110509496 LOC106562840 coding downstream 187039 632021 ~ 650126 (+)
LOC110509498 LOC106562841 coding downstream 246759 691741 ~ 694348 (+)
G2139281 pol3 non-coding upstream 59204 378711 ~ 378933 (+)
G2139267 NA non-coding upstream 77815 352002 ~ 360322 (+)
G2139198 LOC106562832 non-coding upstream 105223 315974 ~ 332914 (+)
G2139197 LOC106562832 non-coding upstream 114303 313808 ~ 323834 (+)
G2139206 NA non-coding upstream 192774 235734 ~ 245363 (+)
G2139328 NA non-coding downstream 13895 458877 ~ 531187 (+)
G2139362 NA non-coding downstream 157262 602244 ~ 602933 (+)
G2139436 NA non-coding downstream 273321 718303 ~ 718546 (+)
G2139437 NA non-coding downstream 275629 720611 ~ 720927 (+)
G2139202 NA other upstream 113089 324366 ~ 325048 (+)
G2139145 NA other upstream 279304 158015 ~ 158833 (+)
G2139520 LOC106562868 other downstream 407267 852249 ~ 853787 (+)
LOC110509506 LOC106562870 other downstream 961232 1271496 ~ 1429741 (+)
LOC110509295 LOC106562719 other downstream 1127565 1572502 ~ 1618684 (+)
LOC110509554 LOC105007341 other downstream 1493402 1935597 ~ 1941376 (+)

Expression


Co-expression Network