LOC110509498 (LOC106562841)


Basic Information

Item Value
gene id LOC110509498
gene name LOC106562841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 691741 ~ 694348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590393.2
TCCATGATTGGCAGGCAGACGACCATGGGACAGCACAGTGTTATTTAGGGTCTGTAGTAGACTATTTGTGTTGGACTAAACTGTGAGCTTACTGCGCTGTCGTCACTGAcacagagatggatagagagcatTTTCTGTGTGCCATGGCTGGCAAGCTGACGACTGTGGGACATCGGAGCATTTATACAAGGAGCCTATCTGAGTgtgtctgaactgtactgaactgtgaTCTCTTGTCATCACCATGAAGGACCCGTGCCGCGTTTGCGGCGTACGCCTCATTGGCAGCCAGTGCCGCTGGATCTTCAACCCGTTGGGCAAGCGGCAGCTCCAGGTCATCCTGTCCCACGTGCTGGGGCGCCAGGTCGACCGCGACCCTGACGGCCAGGCCTCAGAGTTCCTGTGCGGCAAGTGTGTGTTCACACTGGAGCGCGTGGTGCAGTGCGATGTGCAGATAGGCAGGCTGCAGGAGGAGCACGCCACTCTGGTGCAGCAGCTGCAGCAGGAGAGGGAGCACCTGAAGGAGTGTGTGGCCCACGTCTACGGACGCCATAACCCCTTGCCTAAGAGGCCCGATGTGGAGGAAGAGAACAATGTTAAGGTACCCCTCTGGAGGTCCTCTGAAAGTGGGGAAAGCCCAGAGGATTACGGGGGAGGGCAGTGTACGTCAGAGGGGCAGACCAAGGAAGGCGCGGGTGAGGGTGATGGTCGGGGGAGGCGCTCTGTGAGTATGGACCTCCTGGGTGGACCGAGTGGTCCAGGGGGAGTCACAGGTCTGTCAAGCTCAGTCCCCAGGAGGGTGCAAGCAGGGACAGATCTTTGCCCGGTGTGCCAGGTGAAGAACCCCTGGCTCCAGTCATCACGGCTCCGCTCCAGGAGCCTGATGTACCTGGACCTGGTCTACCGCAAGGGTACTCTCGCCTCTCCCGGCCCCAGGCTCCGCTCAGCCTCGCTCCAGTCCCTCAACCTTGACCACCCTCAACAAACAGAACCCCTGTGCCCCCTGCCACAGAGACAGCACAGAGAGTCGAAGATACCATTGAGGGAGCGTTCGCCCTCAGTTGGCCCAGCTACCAGCACTACCACACCCCAGAGAGCCCAGCCTTCCATAATCTCTGACCTGCTGCAGCTGCTGCGCTCCCTCCCCAGACCACCAGTGCCAGGTGCCCCCGGAAGCCGCATCCCCATACTGCGTAGGAGGCCCAGTGACGGACAGCCGCTCCCCCCAAGACGCAGCCTCACCCCTTGGGTCTGGCACAGgctgagggaggcagagtggaggTCCCTCCAGGACCTCACTGAGGAGTTTAATGATGATTACATGCCGCTCAGAGTCGAGGGTTTCACTGAGCATCAGAGTGAAGTGAGCAGACTGGAGACAGCCCACAGGCAGCTGAGTGAGGAGATGAACCAGTTCAGAGCAACCAACCAGAACCTCTCCAAGACCCTGGAGGacacccagaacaacaacaagGTGCTGTCTGGTAAACTGGAGGACACTGAGAACAAGCTCACCACTGAGAAAAAGAACACTCTGAAACAAGACAAAACCATCCAGGGACTCACTCTACTGCTcaaggagaaagaaaaagagaTTGAAGAGCTGTACCATGAGATTGAGGACAGGGACGAGGTTTTAGTCAAAGCCAGGGAGACGGCGCACAAAGCCCAGATCCAGAAATACCAGGATTCCTCGATCAAAACCTTTTTGCGAAATTAA

Function

NR:

description
uncharacterized protein LOC110509498

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590393.2 True 1720 mRNA 0.57 5 691741 694348

Neighbor

gene id symbol gene type direction distance location
LOC110509496 LOC106562840 coding upstream 41615 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 62744 619789 ~ 629216 (+)
LOC110509291 LOC106562839 coding upstream 77158 536258 ~ 614583 (+)
LOC110509495 LOC106562838 coding upstream 161643 528067 ~ 530098 (+)
LOC110509491 LOC106562835 coding upstream 246759 438137 ~ 444982 (+)
LOC110509499 LOC106562841 coding downstream 179 694527 ~ 703826 (+)
LOC110509503 LOC106562869 coding downstream 141480 835828 ~ 844013 (+)
LOC110509506 LOC106562870 coding downstream 577148 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 825068 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 860277 1554625 ~ 1558840 (+)
G2139362 NA non-coding upstream 88808 602244 ~ 602933 (+)
G2139328 NA non-coding upstream 160554 458877 ~ 531187 (+)
G2139281 pol3 non-coding upstream 312808 378711 ~ 378933 (+)
G2139267 NA non-coding upstream 331419 352002 ~ 360322 (+)
G2139436 NA non-coding downstream 23955 718303 ~ 718546 (+)
G2139437 NA non-coding downstream 26263 720611 ~ 720927 (+)
G2139438 NA non-coding downstream 28735 723083 ~ 723874 (+)
G2139439 NA non-coding downstream 29690 724038 ~ 724393 (+)
G2139512 NA non-coding downstream 132439 826787 ~ 827022 (+)
G2139202 NA other upstream 366693 324366 ~ 325048 (+)
G2139145 NA other upstream 532908 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 542488 131779 ~ 149258 (+)
G2139520 LOC106562868 other downstream 157901 852249 ~ 853787 (+)
LOC110509295 LOC106562719 other downstream 878199 1572502 ~ 1618684 (+)
LOC110509554 LOC105007341 other downstream 1244036 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2388869 3083217 ~ 3083571 (+)

Expression


Co-expression Network