LOC110509503 (LOC106562869)


Basic Information

Item Value
gene id LOC110509503
gene name LOC106562869
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 835828 ~ 844013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590403.2
AACAGCTGAATGGTGGCCAATTGAATGGCAACATTACAGAGTAAACACATTTAAAGAGTTTCAAATGAGGACTCTTATTTTGACGTTTTTACAAACATTAGTTTTGCCCCAGGAAGTGCTTGGCCGTGTTCTCGCGTATTTACAAATATGAACGGGAACAGATTATTGTTTTGGAAGGCAGCTGACTAGCAACAGAAGCGTGCTGTTTTTCGACAATTGACCCGACATGACTGCTGCCAGACCGCTTGAGATGGAGCGGCCAAGGCACCGTCCGTTTCTGATCGGTGTTAGCGGAGGAACTGCCAGTGGCAAGTCAACAGTATGTGCAAAAATCATGGAGTTGCTGGGCCAGAATAAGGTGGACCATCGTCAGAGGCAAGTGGCCATCATCAGCCAAGACAGCTTCTACAAAGTCTTGACACCTGACCAGAAGGCCAGGGCACTCAAGGGCCAGTACAATTTTGACCACCCAGATGCTTTCGACAACGAGTTGATGTACCAAACCCTGAAGCATATTGTGGAGGGGACAGTGGTGGAGGTGCCGACATATGACTTTGTCACGCATTCGAGGCTGCAGGACAGGATAACAGTGTACCCGGCTGACGTGGTGCTGTTTGAAGGGATCCTGGTTTTCTACTCTCAGGAAGTGAGGGATATGTTTCACATGAAGCTCTTTGTGGACACAGACTCTGATGTCAGACTGTCTCGCAGAGTTCTGCGGGATATGAAGAGAGGCAGAGACCTGGAGCAGATCCTCACCCAGTACACCACGTTCGTTAAGCCAGCCTTCGAGGAGTTCTGCCTGCCTACCAAGAAATATGCAGATGTCATTATTCCTCGAGGAGTTGACAACATGGTGGCCATCAACCTCATTGTGCAGCACATCCAGGACATCTTGAATGGGGACCTCTGTAAGTGGCACCGTGGAGGAGCGGTCAACGGGCACAGCCGGGGCTTCAAGCGGGCCGCCTCGGAGCAGGGGGACCTGGCCAACTTCCCCCCAGGGAAGAGGGTCCTACTAGAGCCCAGCAGTCGCCCCCACTGAGACAAAAATCAGTGtttactgtctgtcagtctgtctactatatatgtgtgtgtgtgttttgtagtatGTATTTAGAATTGAGGGTTGATGCTTTTACTGACTAGGTTTGGGATGGGGAGAGCTGGGGGGGGGGACTAGCTCCTGTAACTCACCTGCAGACTGCAGAGCATCCAATCGGATAGGGAAGCCTTGAGAATACATCCAAGATAATTCATTAATATATCACTGATTTTTTTTAATTACTCGTCTTCCATGTGTACATTTTTAGCCTGCAGTGGTTTGACTACCTCCGGCTGACATAGGAGTGAGATGGTGgaaaaaaagcttttttttttttttttaaatgtctgttTTGATTTTGGCTTTGTTTGCTGCTTAAAATGTGTTATATTGTATCTGAACATGTGGAAATCAGATAAGTACAATATTTATCACCTTCTAATGTGTAGGCTGTTTGGATTGTGAAATATTTGCTGGATCATCCCTTGATGCCATGGTAAATTCATGCCTTGtgagtttatttttttaaagcattttCCTAATGACCATGATATTTAAGAAATAAAATACGTTCACTATCA

Function

NR:

description
uridine-cytidine kinase 1-like

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590403.2 True 1626 mRNA 0.46 7 835828 844013

Neighbor

gene id symbol gene type direction distance location
LOC110509499 LOC106562841 coding upstream 132002 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 141480 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 185702 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 206831 619789 ~ 629216 (+)
LOC110509291 LOC106562839 coding upstream 221245 536258 ~ 614583 (+)
LOC110509506 LOC106562870 coding downstream 427483 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 675403 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 710612 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 728489 1572502 ~ 1618684 (+)
LOC110509513 LOC106562718 coding downstream 810579 1654592 ~ 1662205 (+)
G2139515 NA non-coding upstream 1661 833822 ~ 834167 (+)
G2139512 NA non-coding upstream 8806 826787 ~ 827022 (+)
G2139439 NA non-coding upstream 111435 724038 ~ 724393 (+)
G2139438 NA non-coding upstream 111954 723083 ~ 723874 (+)
G2139437 NA non-coding upstream 114901 720611 ~ 720927 (+)
G2139464 NA non-coding downstream 2063 846076 ~ 846659 (+)
G2139528 NA non-coding downstream 15516 859529 ~ 859842 (+)
G2140158 NA non-coding downstream 123285 967298 ~ 968022 (+)
G2140165 NA non-coding downstream 127559 971572 ~ 972394 (+)
G2140166 NA non-coding downstream 128503 972516 ~ 972774 (+)
G2139202 NA other upstream 510780 324366 ~ 325048 (+)
G2139145 NA other upstream 676995 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 686575 131779 ~ 149258 (+)
G2139520 LOC106562868 other downstream 8236 852249 ~ 853787 (+)
LOC110509554 LOC105007341 other downstream 1094371 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2239204 3083217 ~ 3083571 (+)

Expression


Co-expression Network