LOC110509506 (LOC106562870)


Basic Information

Item Value
gene id LOC110509506
gene name LOC106562870
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1271496 ~ 1429741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967213.1
TGAATCTGTGACAGAGAGCAGAACGATACGACATGGGCTATAGCTCCACTTCCTCGCAGGTCCTTTAAGCAGCGCGTGCTGATCGGCCAGTGGGACGGTTCAGTTTGGTGCATGTCGGCCCACGCGAGAAAGCGTCGAGAGTGAAGTTGCACCGCCCGCCCCGGAGGTTAGGAGATAAAAGCCCTGAAAGTGATTGGAAGTGATGGTGAAAAGGATTTAGCCCAGgcattaagagagagagagaagggtttgTGAGTAcataagagggagagaagggtaagTGAgtacataagagagagagagagagggactgggagtaGACGAGAGAGAGATTTTCCACCAAGCTTTTTTCTGCCCTTGAGCATCCTGGGTAAACCCGAGCTTGTAAAGTGGGAGGAGAAGAAACGGGCACCAGCCCTTCCTCAAAGTCAATATTTGCACTTTTGATTCTCCTTCAAGCTGGAAATCACGCTCTTTTTCCCCAACCGCCCGTTTCCAGATCTAGGACACCGTTCTACTCTGTGCAGCCTTCCGCGGTGTAGTAAAAAAGTTACCCGCTGGAGAAGACCAACAAGGAGACCAGACCAGATAACAGGAGTggagtacagtagcctacacctCGACAGGAGCCCGATAGTGTAGATGGAGCCGTGAAAGGCTCACGGCAGAGAGGCGGTCGTATAAAGGGACAGAGAAGCTCTCCCGGATCAGATGAATGTTCTAAGACAATCACTGAGGCAAGGCTCCGGGCCGCTGCATCACAACCTGATGGCTGTATCTAAAGACGTAGTCCACTCTCCCTTATCATCCCTAGTGGGCAGCTCTCACCTCTCCCAGGCGAAAAGGACCTCTGAAGTATGGATTTGTTCTGCTGATTCTccaaccaccacccccaccaccgcAAATGCAGCGCTGGCGCCACTATGGTTGAAGTAGATATGAAGTTTCTCTGACTTTCGACGCCCCCTGCTCTATTATTTGTCACTTTTCCATATCCGACAACGAAACAAGTTAGTGTAATTTCCTAAAGGAGCTGTGACTATTTGTAGGGCCACGTTTGTTGAACGGCTGTAAATTGACTTAGCCAACTCAGACACTTTTGTTTCTCTTGCGTTTTGTATTCTTTCCATCATCCCCAAAACGTCCCCTTAAGCTCAGGTGAGCGTGCAGACGCATCTTGGTGACAACGAAGTTACTTACTGTGTCCATATGATCCTCAGTCGAGTTCCATGCTCTTCGCCTCAACTCTGACTACTGTGGCCCCCCTCGCCCTTTTCCGCCAGACCCCACTCGTCCTCGGACCACTCTCGTGCCATGCTCCGCCAGGCCGTGTTGCTCCTCCTGCACTGCTTTGCCTCCTTGACGCTGGGCCAGTACGACCTGTGCAAGTCTCTGGTGAGCACGGACGATGGCGCAGTGTGGGAGCAGTATGCATGCCAGCCCAAGGCCCAGTCCATGAAGGACTACATGCGGGTGAAGGTGGACCCGCCGGGCATCACCTGCGGCAACCCGCCCGAGAGATTCTGCACTCTGGAGAACCCGTACCTGTGCAGTGACGAGTGTGACGCCTCCAACCCGGACCTGGCCCACCCTCCTCAGCTGATGCAGGACCGTGAGCACACCGGCCGCATCACCTACTGGCAGACAGTCACATGGGCCCGTTATCCAGAACCCCTCTTGGCCAACATCTCCCTAGCCTGGAACAAGAGCCTGGAGCTGACGGACGACATCGCCATTACCTTTGAGTACGGCCGCCCCACCTTAATGGTGCTGGACAAGTCCATGGACCACGGCCGCACCTGGCAGCCCTACCAGTTCTACGCTGACGATTGTCTCGAGTCCTTTAACATGGCACCAAAGCGTGTCCCCGACCTATCGCCTGCAAATATTACCCTTGTCATCTGCACCGAGCAGTTCTCACGCTGGGTGGGATCGAAGAACGATAAGAACGTAAAGTTCGAGGTTCGGGAGCGTTTTGCAGTGTTCGCCGGGCCTAGGTTGCTCAACATGGACAGCTTGTACACCCGTATGGAGAGTATGAAGGGCCTGAGGGAATTCTTTACCTTCACTAACCTCAGGCTGAGGCTGCTCAGACCGGCCCTGGGGGGAACCTACATGCAGAGGGACAACCTGCTCAAGTACTTTTACGCCATCTCCAACATCGAGGTGCCCGCAAGGTGTAAGTGTAACCTGCATTCGTCGCTGTGCCTGCTGCAAGAGGGGAACCTCCAGTGTCAGTGTGAACACAACACCACGGGACAGGACTGTCAGCGCTGCAAGAAGGGCTTCAAGGCCAAGTCTTGGAAAGCTGGCTCCTACCTGCCCACACCCAACGGATCTCCCAACACCTGTGCAATCGCTGGTGCCCCCACAGGCGGTGGTTCTAAACTGTCAGAAACTTTGCCTTtgaccaccacaaccactacttCAGCCCCCACTACAACCTCCATAAGTGAAAGTGAACCTGAAACTACAACCGTATTCCCCACTACCACACCAGAACCAGACCTGACCACAACCGCTACTCAAGAAgcttcttctactactactcaGGAAGaGCCCATCCTTTCAACCGAGGCCCCAACCgacaccaccaccactcccccAACAGAGCCCCCTGTTACGGACCCTGAGCCTCCCCTCATTTACACCATCACCCCCACCGattcccctccaccacctccacttaTAGAGGAAAAACGTACAACTTCCATCTACATTACCACAGAGGCCACGCCCCCTACAACCACCCCTCAGTCTATCACAGAAGAGTCCACATCCCCTCCACCGATCATGGAGGAGCTCACGTCACTGTTCCTGACCGAGAGCACTGCCCCTGTTACAACACCGCCCCCAACGGAGCTGCCTAAGCCAATGGTTGTAGAGAGTGAAGAAGTGTGCCTGTCTGTCCGGTGTGGCAATAAAGTGAGAATGTTCCATATTTACAACTTGTTTCCCACATGCCTTGACATATTAGTCATTCCTATTTTAAAGGTTAGATACCCCTTAGAGCTCtttgaaaataacaatatttttgcACATACTTCTTTTGGAGGTTGCAATGTTTTTTGTACAGATGCTAATAGGGAAGTGGCAGAAGATGCAGGAGAGACTGAGATGCCCTCTGAAAAGGAGGGTGAGGAAGAAGagatgaaggagaaagagaggggggaagagactgAAGAAGTCACCTCCAAACCTGCTGAAGCAGAGGACAATGCGAAGAGTGATACTCCCTCTAAGATAGGACTAAAGAAAGAGGgtgtggaggagaaagagggaatgGAGAAGAAAGAGGAAAAGACTGAAGAAGTCACCCAAAAGCCTGAAGCAGTGGACTCTGGGAAAAGAGAAAAGCCCTCTGGCAAAGATGAGCGGATGGTggagaaaaaggaaaagaaagagacgacaacagagaaggagagaaataaAGTTCCCCCCCAACCTGAGGCAGAGGGCCCTGGAGAGAGTGAGAGCCCCTctgagggagaaggaaagaaggaggaAGTGGTAAAGAAGGAGATTGAGGCAGAAGCCCCTCCAATGCCTGAAGTGGAGGGGATGGGTGGAACACAGGAGACCGGGAAACCCTctgagaaagaggtagagaaagaggaggggagggaggaggacacaGGAAAAAAGACTGAAGAGGAAGTTCGCGAATCACCTGAGTGGGGAAGCTTGGGTCAGGAGACCTTGGAGCCCcctgagagagaagaagagaagaagaagtgggaggatgaagagagtgaagaggagagagagtatgCAAAGAAGAAAGGGATTCTCAAGCTCTTGATCTCAGGAGGAGAGCCCCAGGCCAGACAGTTGTATGGGATCATATATGATGATTTCAAAGactgTGAGTGCTACGGCCACTCTAACCGCTGCAGCTACATAGACTACCTGAACATCGTAACGTGTGTCAGCTGCAAGCACAATACAAGAGGACAGAACTGCCAGCACTGCAGACTGGGCTACTTCAGAAATAACTCAGCTGAACTGGATGATGAGGGTGTCTGCATCGAGTGTAACTGTAACCAGATGGGTTCTGTCCATGACCGGTGTAATGGGACAGGCTTCTGCCAGTGTAAAGATGGCACTACGGGGCCCAAGTGTGACGACTGTTTCCCTGGGTACTACTGGAAACAAGGCTGTTACTCTAATGTGTGTGACGAGGAGCTGCTCCTGTGCCAGAATGGTGGGACGTGCTCCCAGAACCAGAAGTGTATCTGTCCTCCAGAGTTTAAGGGTGTGCTGTGCCAACAGTCCCGCTGCGATGGGGGCAAGGCCTGCAACACCgcctccaccctccacctcctgGCCCTCGTCCCCCTACTGCTCTGCGTCCTGCTACCACACCTTTTGGCCACATTAACTGCACACTGAGTCACCTACTGCCTCCTCAAATACAGGGGTAACTGTTGTGTGTGTGGGCAACCCCAGAGAGGGAAGAGTGGGAAAGGCCTGCTAGCTGGCCAAGGACCCTATGAGCACACAAACATCACAAGACTGTTACTGACTCGGGGAACCCCCCCTGTTGTGAAAGTAAAATGACACTTCAGAGGAAGACTGAGGAAAATCAAGACAACCAACCCACTGTCTCTCCCTTTATACGAGAGACCTGGAGAAATCGCATACCAAAAagcattattattactattaaacAAGCAAATGAGAATCATTACTGTTCACTATgaagaagaagggagggaggaaatggCTGATGTAAAACAATGACGTTTCCTTTGTCTTTATTGATTTGAGTTAATGCACCCCACTTCTCTTGAGACACTGCACTTACTGCTGCGGAAAGAAAGACAGGGATTGTTTGACTAGACATGGGTGGGGAgctagagggagggggagggctaGGTCGTGATTCGCTGCTGAGGACTACTTAGAATATTAACCAGGTTCCACGACTTCGACTCGAAAACAGACTTGTTTTTACCTTTTTCCTTTTTCTGCTGCTGTTTTTTATTTCAGCATCTTTTTCTGTCATTAATGTATCTTATGGGCCCACCGACAGACTGAGATGATACATTTAATTATTACAATATCCAGAGGTTTATCAATATTAAGATTTTAGTCACTATTACGGTCATTATAGGAATGAGTGTTGCCACCATTTAGCAAGATTTAATCTTCACACAGTATTCAGGAATAAAACAATCTAACTTATCAACAGTctaaaaagagagaaagggggagaaagtaTCAATATTATTAGTCATTATTTGAATATTTTTTGTGGAGATTCTTTTTGTTTAGTTATTATACATTAACTATTCCAGAGGAGCATTTTATTACACTGTAAGCTTTACAGTAAATGTGAATTATTTACCTGTG
>TU2448098
AGATATTTGAAGCCTTCCTAAATTGTTAATATCCTAAACCTACTCTAACTGTTTACTAaaactgttgggggtactcgaggagtggagttgggaaacactgtcctatgtcccactgttaaCAACActaactcttctctctcccctccaatgtcactactgtactctaaccatCCCATAACCATTCTCAAACCATTCTTtaactcttctctctcccctccaatgtcactactgtactctaaccatCCCATAACCATTCTCAAACCATTCTttaactcttctctctcctctcagactgTGAGTGCTACGGCCACTCTAACCGCTGCAGCTACATAGACTACCTGAACATCGTAACGTGTGTCAGCTGCAAGCACAATACAAGAGGACAGAACTGCCAGCACTGCAGACTGGGCTACTTCAGAAATAACTCAGCTGAACTGGATGATGAGGGTGTCTGCATCGAGTGTAACTGTAACCAGATGGGTTCTGTCCATGACCGGTGTAATGGGACAGGCTTCTGCCAGTGTAAAGATGGCACTACGGGGCCCAAGTGTGACGACTGTTTCCCTGGGTACTACTGGAAACAAGGCTGTTACTCTAATGTGTGTGACGAGGAGCTGCTCCTGTGCCAGAATGGTGGGACGTGCTCCCAGAACCAGAAGTGTATCTGTCCTCCAGAGTTTAAGGGTGTGCTGTGCCAACAGTCCCGCTGCGATGGGGGCAAGGCCTGCAACACCgcctccaccctccacctcctgGCCCTCGTCCCCCTACTGCTCTGCGTCCTGCTACCACACCTTTTGGCCACATTAACTGCACACTGAGTCACCTACTGCCTCCTCAAATACAGGGGTAACTGTTGTGTGTGTGGGCAACCCCAGAGAGGGAAGAGTGGGAAAGGCCTGCTAGCTGGCCAAGGACCCTATGAGCACACAAACATCACAAGACTGTTACTGACTCGGGGAACCCCCCCTGTTGTGAAAGTAAAATGACACTTCAGAGGAAGACTGAGGAAAATCAAGACAACCAACCCACTGTCTCTCCCTTTATACGAGAGACCTGGAGAAATCGCATACCAAAAagcattattattactattaaacAAGCAAATGAGAATCATTACTGTTCACTATgaagaagaagggagggaggaaatggCTGATGTAAAACAATGACGTTTCCTTTGTCTTTATTGATTTGAGTTAATGCACCCCACTTCTCTTGAGACACTGCACTTACTGCTGCGGAAAGAAAGACAGGGATTGTTTGACTAGACATGGGTGGGGAgctagagggagggggagggctaGGTCGTGATTCGCTGCTGAGGACTACTTAGAATATTAACCAGGTTCCACGACTTCGACTCGAAAACAGACTTGTTTTTACCTTTTTCCTTTTTCTGCTGCTGTTTTTTATTTCAGCATCTTTTTCTGTCATTAATGTATCTTATGGGCCCACCGACAGACTGAGATGATACATTTAATTATTACAATATCCAGAGGTTTATCAATATTAAGATTTTAGTCACTATTACGGTCATTATAGGAATGAGTGTTGCCACCATTTAGCAAGATTTAATCTTCACACAGTATTCAGGAATAAAACAATCTAACTTATCAACAGTctaaaaagagagaaagggggagaaagtaTCAATATTATTAGTCATTATTTGAATATTTTTTGTGGAGATTCTTTTTGTTTAGTTATTATACATTAACTATTCCAGAGGAGCATTTTATTACACTGTAAGCTTTACAGTAAATGTGAATTATTT

Function

NR:

description
netrin-G2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967213.1 False 5355 mRNA 0.50 18 1271496 1429741
TU2448098 True 1777 TUCP 0.44 3 1406214 1429734

Neighbor

gene id symbol gene type direction distance location
LOC110509503 LOC106562869 coding upstream 427483 835828 ~ 844013 (+)
LOC110509499 LOC106562841 coding upstream 567670 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 577148 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 621370 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 642499 619789 ~ 629216 (+)
LOC110509509 LOC106562874 coding downstream 89675 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 124884 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 142761 1572502 ~ 1618684 (+)
LOC110509513 LOC106562718 coding downstream 224851 1654592 ~ 1662205 (+)
LOC110509514 LOC106562918 coding downstream 291250 1720991 ~ 1760307 (+)
G2140369 NA non-coding upstream 49668 1221429 ~ 1221828 (+)
G2140263 NA non-coding upstream 59627 1144562 ~ 1211869 (+)
G2140237 NA non-coding upstream 155057 1116120 ~ 1116439 (+)
G2140235 NA non-coding upstream 155911 1114015 ~ 1115585 (+)
G2140234 NA non-coding upstream 157840 1113361 ~ 1113656 (+)
G2140511 NA non-coding downstream 28458 1458199 ~ 1458409 (+)
G2140520 NA non-coding downstream 49177 1478918 ~ 1479139 (+)
G2140523 NA non-coding downstream 51446 1481187 ~ 1481435 (+)
G2140524 NA non-coding downstream 52779 1482520 ~ 1482731 (+)
G2140526 NA non-coding downstream 55995 1485736 ~ 1486010 (+)
G2139520 LOC106562868 other upstream 417709 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 680692 536258 ~ 614583 (+)
G2139202 NA other upstream 946448 324366 ~ 325048 (+)
G2139145 NA other upstream 1112663 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 1122243 131779 ~ 149258 (+)
LOC110509554 LOC105007341 other downstream 508643 1935597 ~ 1941376 (+)
G2142277 NA other downstream 1653476 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 1889208 3318949 ~ 3324094 (+)
G2144385 NA other downstream 3598010 5027751 ~ 5028239 (+)

Expression


Co-expression Network