LOC110509510 (LOC100194725)


Basic Information

Item Value
gene id LOC110509510
gene name LOC100194725
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1551060 ~ 1554641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590414.2
ATTACCCACAATGCATAGGTCTTCCTTTCTATCTGATCCAACATGCCTAAAGGCAAGAAGTCTAAGGGGAAGAAGGTGGCACCCGCCCCTTCAGTGGCCAAGAAGCACGAGGCCAAGAAAGTGGTCAATCCCCTGTTCGAGAAGAGGCCAAAGAACTATGGCATTGGGCAGGACATCCAGCCCAAGCGTGATCTGACACGCTTTGTGAAATGGCCCCGCTACATTCGCCTGCAGAGGCAGCGCTCCATCCTGTACAAGCGTCTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCACTGGACCGCCAGACGGCCACACAGCTGTTCAAACTGGCCCACAAGTACAGGCCGGAGACCAAGCAGGAGAAGAAGCAGAGGCTGCTGGCCCGCGCTGAGCAGAAGGCTGCTGGAAAGGGAGATACCCCAACCAAGAGGCCTCCTGTTCTCCGTGCAGGTGTGAACACAGTCACCACTCTAGTGGAAAGCAAGAAGGCCCAGCTGGTGGTCATTGCCCACGATGTGGACCCTATTGAGTTAGTGGTGTTCCTGCCTGCTCTGTGTCGTAAGATGGGTGTCCCTTACTGCATTGTCAAGGGAAAGGCCAGGTTGGGACGACTGGTACACAGAAAGACCTGCACTTCAGTTGCCTTCACACAGACAAACCCTGAGGACAAAGGTGCCCTTGCCAAGCTGGTGGAAGCCATCAAGACCAACTACAATGACAGATACGAGGAGATCCGTCGTCACTGGGGAGGTGGTATCATGGGCCCCAAGTCCACAGCCCGCATCACAAAGCTGGAGAAGGCAAAGGCCAAGGAACTGGCCACCAAGCTCGGATAAACTGTTTGCTATCAAAATAAATGTTCCAAGAAATATG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
K02936 RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590414.2 True 880 mRNA 0.54 8 1551060 1554641

Neighbor

gene id symbol gene type direction distance location
LOC118945313 NA coding downstream 16687 1530914 ~ 1534373 (-)
LOC118945259 miga2 coding downstream 60647 1485841 ~ 1490434 (-)
LOC110509508 LOC106562872 coding downstream 73159 1470826 ~ 1477901 (-)
trnad-guc-5 NA coding downstream 440153 1110836 ~ 1110907 (-)
trnad-guc-4 NA coding downstream 450307 1100682 ~ 1100753 (-)
LOC110509306 LOC106562912 coding upstream 380634 1935275 ~ 1935940 (-)
LOC110509556 LOC106562911 coding upstream 386545 1941186 ~ 1943193 (-)
LOC118945681 NA coding upstream 389345 1943986 ~ 1944040 (-)
mrps24 LOC106562909 coding upstream 488266 2042907 ~ 2044519 (-)
LOC110509353 LOC106562905 coding upstream 718872 2257334 ~ 2308157 (-)
G2141215 NA non-coding downstream 5982 1544864 ~ 1545078 (-)
G2141212 NA non-coding downstream 10687 1540124 ~ 1540373 (-)
G2141210 NA non-coding downstream 12494 1538360 ~ 1538566 (-)
G2141208 NA non-coding downstream 15328 1535139 ~ 1535732 (-)
G2141222 NA non-coding upstream 5502 1560143 ~ 1560376 (-)
G2141223 NA non-coding upstream 5817 1560458 ~ 1560890 (-)
G2141276 NA non-coding upstream 65556 1620197 ~ 1620523 (-)
G2141283 NA non-coding upstream 85436 1640077 ~ 1640443 (-)
G2141284 NA non-coding upstream 86182 1640823 ~ 1641093 (-)
LOC110509502 LOC106562868 other downstream 613151 843748 ~ 937986 (-)
LOC110509492 LOC106562836 other downstream 1122988 425727 ~ 437447 (-)
LOC110509490 LOC106562833 other downstream 1149505 398511 ~ 425356 (-)
G2139807 LOC106602244 other downstream 1172573 378211 ~ 378487 (-)
G2141258 NA other upstream 43380 1598021 ~ 1613209 (-)
G2141289 LOC100380853 other upstream 94658 1649299 ~ 1649731 (-)
LOC110509525 LOC106562824 other upstream 1764302 3317596 ~ 3324117 (-)
G2143134 NA other upstream 2073524 3628165 ~ 3635240 (-)
LOC110509531 LOC106570883 other upstream 2767258 4208866 ~ 4430679 (-)

Expression

LOC110509510(LOC100194725) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1250.
End of interactive chart.

LOC110509510(LOC100194725) Expression in each Bioproject

Bar chart with 21 bars.
LOC110509510(LOC100194725) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60000.
End of interactive chart.

Co-expression Network