Item | Value |
---|---|
gene id | LOC110509550 |
gene name | ogdh |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048593.1 |
NCBI id | CM023247.2 |
chromosome length | 47748341 |
location | 2124528 ~ 2180665 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
ogdh | Enables oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Involved in 2-oxoglutarate metabolic process; histone succinylation; and succinyl-CoA metabolic process. Located in mitochondrion and nucleus. Part of oxoglutarate dehydrogenase complex. |
description |
---|
2-oxoglutarate dehydrogenase, mitochondrial-like |
id | description |
---|---|
K00164 | OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036967677.1 | False | 4824 | mRNA | 0.50 | 24 | 2124528 | 2180665 |
XM_036967679.1 | False | 4777 | mRNA | 0.50 | 23 | 2124530 | 2180665 |
XM_036967680.1 | False | 4767 | mRNA | 0.50 | 23 | 2124531 | 2180665 |
XM_036967681.1 | False | 3787 | mRNA | 0.50 | 22 | 2152127 | 2180665 |
XM_036967682.1 | True | 3742 | mRNA | 0.50 | 21 | 2152127 | 2180665 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110509551 | LOC106562908 | coding | upstream | 3187 | 2058546 ~ 2121341 (+) |
LOC110509305 | NA | coding | upstream | 67232 | 2047177 ~ 2057296 (+) |
LOC110509553 | LOC106562910 | coding | upstream | 102246 | 1965320 ~ 2022282 (+) |
LOC110509554 | LOC105007341 | coding | upstream | 183152 | 1935597 ~ 1941376 (+) |
LOC110509557 | LOC106562915 | coding | upstream | 247565 | 1873013 ~ 1876963 (+) |
LOC110509547 | NA | coding | downstream | 41214 | 2221879 ~ 2256249 (+) |
LOC110509549 | ppia | coding | downstream | 76663 | 2257328 ~ 2263656 (+) |
LOC118945508 | NA | coding | downstream | 133837 | 2314502 ~ 2314620 (+) |
LOC118945372 | NA | coding | downstream | 134216 | 2314881 ~ 2314999 (+) |
LOC118945392 | NA | coding | downstream | 134512 | 2315177 ~ 2315295 (+) |
G2140807 | NA | non-coding | upstream | 58712 | 2065423 ~ 2065816 (+) |
G2140714 | NA | non-coding | upstream | 108626 | 1917305 ~ 2015902 (+) |
G2140709 | NA | non-coding | upstream | 225565 | 1898673 ~ 1898963 (+) |
G2140708 | NA | non-coding | upstream | 226546 | 1897492 ~ 1897982 (+) |
G2140707 | NA | non-coding | upstream | 228779 | 1895520 ~ 1895749 (+) |
G2140890 | NA | non-coding | downstream | 35848 | 2216513 ~ 2216714 (+) |
G2140902 | NA | non-coding | downstream | 95101 | 2275766 ~ 2298103 (+) |
G2140905 | NA | non-coding | downstream | 137832 | 2318497 ~ 2361810 (+) |
G2140921 | NA | non-coding | downstream | 195672 | 2376337 ~ 2511786 (+) |
G2140946 | NA | non-coding | downstream | 233006 | 2413671 ~ 2414792 (+) |
LOC110509295 | LOC106562719 | other | upstream | 545969 | 1572502 ~ 1618684 (+) |
LOC110509506 | LOC106562870 | other | upstream | 694794 | 1271496 ~ 1429741 (+) |
G2139520 | LOC106562868 | other | upstream | 1270741 | 852249 ~ 853787 (+) |
LOC110509291 | LOC106562839 | other | upstream | 1533724 | 536258 ~ 614583 (+) |
G2142277 | NA | other | downstream | 902552 | 3083217 ~ 3083571 (+) |
G2142386 | LOC106562824 | other | downstream | 1138284 | 3318949 ~ 3324094 (+) |
G2144385 | NA | other | downstream | 2847086 | 5027751 ~ 5028239 (+) |
G2144416 | NA | other | downstream | 2854524 | 5035189 ~ 5035913 (+) |
G2144756 | NA | other | downstream | 3103196 | 5283861 ~ 5284603 (+) |