LOC110509521 (LOC100195713)


Basic Information

Item Value
gene id LOC110509521
gene name LOC100195713
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3088039 ~ 3142362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590437.2
ATGCAACAATATGCTTTCTTAAAATTAAATGGGAAATAATTAACATAATCTTCCCCTGAAGCAGGAAGCAAATCATAACAACACAGATGAACCGGAAGAGGAtgttgttttgttgacatcagACGAACACGAAAAACAGAGGAAAATATAAATGATTAAACAATAAATGAATTGAATCAACCAAAGAACTACCCGTGTGCAAAGCTAAGCTTCTTGTAGACCTAACCCCGGAGTTAGGGAGGTCTTGAGCACACTGCCTCTTCTGTGACCACCTCATCTATCCCGATGCCTACCCTTTGAGAGCTTCCCGGCACCTACCTCCTGAGGCCACCTGCTTTGCCCTGTTGTTGTCAAACAGAGGGGAAGTGAGAAGCAGCAGCCGGCATGGAAGCCAAGGCAGGGGACAACCCCGACAGCCTCATGGCACTGACCACAGCCTTCTGCCTGAGGAACCTGAGGAGGACCATGTGCTACCTGGGAGAGAGGAACAAGCTCTGCCTGCGCTCAGACGTCTTCCTGCCCAGCGAGATCTGTGACAAGCTGGTCAACACATACACGGAACTGGTCCATATGGACAGTAACTTTGAGCCGCAGGACGGCTTCTTCCAGCTGTTCTCGGACCCGCACAGCACCAGGCTCACCCGGGTACAGCTGAGGGAGGACTTTGTGCGTGACAGGGACCTGGAGGCCATTGGGAAACAGGACTTGATAGAGCTCCACCTCACCAACTGCAACAACCTATCAGCTCACAGCCTCAGGACTTTAACCAGATTCCGCCAGACCCTGGTCTCCCTCAGCCTGTTCGGCTGCAGCCGCATCTTCTATCGCAAGGGTGGTGCCCCACTGGCATGCgacgaagaagaggaggaagagaggccagCCTCCAAACAGGCACCGGAGACAGACTTCAGCTTCCAGGGCTTCAACCGGCTGCGGCTGCTCAACCTCGGGGGTCTGCCTGAGGAGGTGGACGCTGAGGCTCTGCTCAAGCCCCTGCCGGCCCTCACCTCCCTAGACCTGTCCGGGGTGCCGCTGCCCAAGGCTGCCTTCCTGGCCCACTGGAAGGAGAGGCTGGCCTCGCTAGTGCTCTACAATGTGGACCTCTCCGAGGAGCTAATCAACACGGTGGTGGAGCTGGGACACCTCAGGCACCTGGATATCTCTAGAGAGCGCAATTCCAAGTTCAAGATGACCCGTAAGATCCTGACGGCCATTGTGCAGGGCCTAGTCAACCTGGTGTCACTGGACATCTCAGGTCATATCATGCTGGACAACTGCACAGTCCCACACTTCGAGGAGGCCATGGGACGTCCAAGtATCGAGCCCTGCAAGAGCAGCATCTACCCTTTCCAGGAGCTAAAGAGGCCTCTGCAGTTTCTGGGGCTCTACAACACCACCCTTTGTAATGTGACACACATCCCTGCTTACAAGGTCACAGGCTCTAAGAATGAAGACCAGGTCCTGAATGCCATCGAGGTCTACACAGAGTTCCGCCCGGAGCTGGCCCACCGAGCCATCAACCAGCTGTTTGATATCGCCAGGATACAGCACTGCAGCCAGCTACTGCGGGCACTGCAGCTGGTGATCGCTGCACTGAAGTGCCACAAGTATGACAAGAGCATCCAGGTGACGGGCAGCGCGGCCCTGTTCTACTTGACCAACACAGAGTACCGCAGTGATCAGAGTGTGCGGTTGCGCCGGCAGGTCATCCAGGTGGTGCTCAACGGCATGGAGCAGTACCAGGAGGTCACGGTCCAGAGGAACTGCTGCCTGACGTTGTGTAACTTCAGCATCCCTGAGGAGCTGGAGTTCCAGTACGGCCGGGTCAACCTGCTGCTGCTGAAGATCCTGGAGCCGGCCCGGCAGGACGAGTCCATCCAGCGCATCGCCGTGCACCTCTGCAACGCCCTGGTCTGCCAGGTGGACAACCACCACAAGGAGGCTGTGGGCAAGATGGGATTCGTCAAGACAATGTTGAATCTCATCCAGAAAAAGCTACAGGACAGGATGTGTGACCAGGTAATGGAGTTCTCCTGGAGTGCTCTGTGGAACATCACTGACGAGACGCCAGACAACTGTCAGATGTTCCTTAACTGCAAGGGCATGAGCCTCTTCCTGGACTGCCTGAAGGAGTTTCCAGACAAGCAGGAGCTCCACCGTAACATGCTGGGGCTGCTGGGTAATGTAGCAGAAGTGAGGGCTCTGCGACCACAACTCCTCACACCACAGTTCATCTCTGTCTTCAGTAACCTGCTGGACAGCAAGGCGGATGGGATCGAGGTATCCTATAATGCGTGCGGGGTGCTGTCCCACATCGTGTTCGATGGGCCAGATGCGTGGGCCATGGAAGAGCCACTGAGGGACATGGTCATGGACAAGATGATGGACGCTATCCAGAGCTGGGACGTCACCTCCCGCCGGAATATCAACTACAGATCCTTTGAACCCATCTTGCGCCTGCTGCCTCAGAGCATCGCCCCAGTCAGTCAGCACTGGGCCACGTGGGCACTCTTCAACCTGGTGTCAGTCTACCcGAGTAAGTACTGCCCTCTGCTGATAAAAGAAGGAGGGATTGTTCTCCTGGAGAAGGTGCTGGAGCTCCAGACATCACATGAAGAGACCAAGGACATGGCGCGgaaggtgatggagcaGTGTGAGAACTTCAAAGAAGACCCCATGGAAACGACGAGGTAGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACGACGTCAGGGGAGCAATACCGCTAGACGAACAAAAAGGCAGAACTTCATAGGAACCCTTCACTATCTTCTCACCACAAGTGTCAACTGTCTGCATCAAGTTACTGGACAGAGCCTTGTTATGTGACGCTATTAGGAAGTTGAGATGTGGTGCACcgacttggtgtgtgtgtgtgcgcgctcccgcgtgtgtgtgttatttgtgtTGCACATGATAAGCAGAATTTGTATAATGTATTTGTGTTCATTTATTGATGGTGTGAGTGCTTGTCCTCGTTTGGGTGTGAGTGTGCTagactgtgtttgcgtgtgtaatgagtgtgtgtaataagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaggacGTATGTGTGTTATAATAAGGATCAAAACACCAGGGAGATCTTTGTCTCTGGAAAATAGGAAACAAAAATGGAGGTTGTTATGGTATTTTTCCCATTTTCTGATGCAGAAATTTCAAATGGATGACGCCATGAGGTGTGGACAGTCAACTAGTTTTATCCCAGACAGCACTGATCTGTGGACAGTTGTTATTGAGCAGTGAAGTTGCCATGTCTGTGGATGCATCTCTATCCCACACTGATCGAGAGCGTAACCGTGGAAGTTTGTAGCCGTGACAATGACCCCAGTAGAAGTTTTCCTAGATCCTGTGGCATGGGGAAGGactttttgttttttgttgtacTTATTTGGAGTTGCCATCTGTCCCGTCATTGTTTgtcagtttttttatttatatgATTATAAACATTCCTATGATTTCATCTGTAAATCTAGGCTTTGTTCCCCATTCCTTACATAtatgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccatcattgaaaataagaatttgttcttaactgactttaactgacttagttaaataaaggtaatatatatatatataacccacAAAGAAGCTGAATGATGAGAAACAAATCAGGAAGGACTATACTGTTAGGGTTTTTGGAATCTCAACAAAAATATGCCCATGTTCTTAAATGTTAAGGAAAATCTGAAGGTGGATGATTTTAACTTTGTGTCTTTCATGTATATGGATACAACCATAAAGTCTTAGCATCATATATTTAGATTTGACACATTTAGGAAAGCCTGTATCTCATTTCTGAACATTTAGTTGCCATGTAAGAAATATTTAGCCTAACATTTGCACATGATTTGGTAAGGTAGTGGAGTGATACAGTGGTATACTTGGTCAACAAAAGCTAAAATCAAATGTGAAGATTAGTTCATAAAATGCTGACCTCAGATTTTTACGCAACATTAATTCAAGAATTCATGCTGTATTGTAACAATCAGTGGGGTcggaaattattgacacccttgataaagatgagcataaatgactgtaaaataaatacaaatattgagCTATATTTTATTCAAAAAAAAgggaaattatattttatacCAACACAATTACTCAGAGAAATAGAtattgtttaacaagtaatacttttTTTCTCAAAGGTAGGGGTCaagattgacacccctgttttcaataccttgcGAGGATGACGGCGCAgagactttttctaaaatgttttatgagttggagaacacaatGGGAGGGATCTTATCCCCATCCTaaatacagaatccttccagatccttgatatccttcatctgcgCTGATcaggactgccctcttcaatgcAAACCACAGGTTTGGCCCTCTGGGCCATTAGATATAGAATTAATTGATCTTTGCTTTTCCATGTACATTGTCTTAATTCTTTTTGAtgtgattttgtatgtttgtatagtgcattaggaaagtattcataccccttaaatttttccacattttgttacgttacagccttattctaaaatgaattaaatcattttttcccctcatca
>XM_021590436.2
CAACAATATGCTTTCTTAAAATTAAATGGGAAATAATTAACATAATCTTCCCCTGAAGCAGGAAGCAAATCATAACAACACAGATGAACCGGAAGAGGAtgttgttttgttgacatcagACGAACACGAAAAACAGAGGAAAATATAAATGATTAAACAATAAATGAATTGAATCAACCAAAGAACTACCCGTGTGCAAAGCTAAGCAGCTTCTTGTAGACCTAACCCCGGAGTTAGGGAGGTCTTGAGCACACTGCCTCTTCTGTGACCACCTCATCTATCCCGATGCCTACCCTTTGAGAGCTTCCCGGCACCTACCTCCTGAGGCCACCTGCTTTGCCCTGTTGTTGTCAAACAGAGGGGAAGTGAGAAGCAGCAGCCGGCATGGAAGCCAAGGCAGGGGACAACCCCGACAGCCTCATGGCACTGACCACAGCCTTCTGCCTGAGGAACCTGAGGAGGACCATGTGCTACCTGGGAGAGAGGAACAAGCTCTGCCTGCGCTCAGACGTCTTCCTGCCCAGCGAGATCTGTGACAAGCTGGTCAACACATACACGGAACTGGTCCATATGGACAGTAACTTTGAGCCGCAGGACGGCTTCTTCCAGCTGTTCTCGGACCCGCACAGCACCAGGCTCACCCGGGTACAGCTGAGGGAGGACTTTGTGCGTGACAGGGACCTGGAGGCCATTGGGAAACAGGACTTGATAGAGCTCCACCTCACCAACTGCAACAACCTATCAGCTCACAGCCTCAGGACTTTAACCAGATTCCGCCAGACCCTGGTCTCCCTCAGCCTGTTCGGCTGCAGCCGCATCTTCTATCGCAAGGGTGGTGCCCCACTGGCATGCgacgaagaagaggaggaagagaggccagCCTCCAAACAGGCACCGGAGACAGACTTCAGCTTCCAGGGCTTCAACCGGCTGCGGCTGCTCAACCTCGGGGGTCTGCCTGAGGAGGTGGACGCTGAGGCTCTGCTCAAGCCCCTGCCGGCCCTCACCTCCCTAGACCTGTCCGGGGTGCCGCTGCCCAAGGCTGCCTTCCTGGCCCACTGGAAGGAGAGGCTGGCCTCGCTAGTGCTCTACAATGTGGACCTCTCCGAGGAGCTAATCAACACGGTGGTGGAGCTGGGACACCTCAGGCACCTGGATATCTCTAGAGAGCGCAATTCCAAGTTCAAGATGACCCGTAAGATCCTGACGGCCATTGTGCAGGGCCTAGTCAACCTGGTGTCACTGGACATCTCAGGTCATATCATGCTGGACAACTGCACAGTCCCACACTTCGAGGAGGCCATGGGACGTCCAAGtATCGAGCCCTGCAAGAGCAGCATCTACCCTTTCCAGGAGCTAAAGAGGCCTCTGCAGTTTCTGGGGCTCTACAACACCACCCTTTGTAATGTGACACACATCCCTGCTTACAAGGTCACAGGCTCTAAGAATGAAGACCAGGTCCTGAATGCCATCGAGGTCTACACAGAGTTCCGCCCGGAGCTGGCCCACCGAGCCATCAACCAGCTGTTTGATATCGCCAGGATACAGCACTGCAGCCAGCTACTGCGGGCACTGCAGCTGGTGATCGCTGCACTGAAGTGCCACAAGTATGACAAGAGCATCCAGGTGACGGGCAGCGCGGCCCTGTTCTACTTGACCAACACAGAGTACCGCAGTGATCAGAGTGTGCGGTTGCGCCGGCAGGTCATCCAGGTGGTGCTCAACGGCATGGAGCAGTACCAGGAGGTCACGGTCCAGAGGAACTGCTGCCTGACGTTGTGTAACTTCAGCATCCCTGAGGAGCTGGAGTTCCAGTACGGCCGGGTCAACCTGCTGCTGCTGAAGATCCTGGAGCCGGCCCGGCAGGACGAGTCCATCCAGCGCATCGCCGTGCACCTCTGCAACGCCCTGGTCTGCCAGGTGGACAACCACCACAAGGAGGCTGTGGGCAAGATGGGATTCGTCAAGACAATGTTGAATCTCATCCAGAAAAAGCTACAGGACAGGATGTGTGACCAGGTAATGGAGTTCTCCTGGAGTGCTCTGTGGAACATCACTGACGAGACGCCAGACAACTGTCAGATGTTCCTTAACTGCAAGGGCATGAGCCTCTTCCTGGACTGCCTGAAGGAGTTTCCAGACAAGCAGGAGCTCCACCGTAACATGCTGGGGCTGCTGGGTAATGTAGCAGAAGTGAGGGCTCTGCGACCACAACTCCTCACACCACAGTTCATCTCTGTCTTCAGTAACCTGCTGGACAGCAAGGCGGATGGGATCGAGGTATCCTATAATGCGTGCGGGGTGCTGTCCCACATCGTGTTCGATGGGCCAGATGCGTGGGCCATGGAAGAGCCACTGAGGGACATGGTCATGGACAAGATGATGGACGCTATCCAGAGCTGGGACGTCACCTCCCGCCGGAATATCAACTACAGATCCTTTGAACCCATCTTGCGCCTGCTGCCTCAGAGCATCGCCCCAGTCAGTCAGCACTGGGCCACGTGGGCACTCTTCAACCTGGTGTCAGTCTACCcGAGTAAGTACTGCCCTCTGCTGATAAAAGAAGGAGGGATTGTTCTCCTGGAGAAGGTGCTGGAGCTCCAGACATCACATGAAGAGACCAAGGACATGGCGCGgaaggtgatggagcaGTGTGAGAACTTCAAAGAAGACCCCATGGAAACGACGAGGTAGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACAACGGCCAACGGAGGACGACGTCAGGGGAGCAATACCGCTAGACGAACAAAAAGGCAGAACTTCATAGGAACCCTTCACTATCTTCTCACCACAAGTGTCAACTGTCTGCATCAAGTTACTGGACAGAGCCTTGTTATGTGACGCTATTAGGAAGTTGAGATGTGGTGCACcgacttggtgtgtgtgtgtgcgcgctcccgcgtgtgtgtgttatttgtgtTGCACATGATAAGCAGAATTTGTATAATGTATTTGTGTTCATTTATTGATGGTGTGAGTGCTTGTCCTCGTTTGGGTGTGAGTGTGCTagactgtgtttgcgtgtgtaatgagtgtgtgtaataagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaggacGTATGTGTGTTATAATAAGGATCAAAACACCAGGGAGATCTTTGTCTCTGGAAAATAGGAAACAAAAATGGAGGTTGTTATGGTATTTTTCCCATTTTCTGATGCAGAAATTTCAAATGGATGACGCCATGAGGTGTGGACAGTCAACTAGTTTTATCCCAGACAGCACTGATCTGTGGACAGTTGTTATTGAGCAGTGAAGTTGCCATGTCTGTGGATGCATCTCTATCCCACACTGATCGAGAGCGTAACCGTGGAAGTTTGTAGCCGTGACAATGACCCCAGTAGAAGTTTTCCTAGATCCTGTGGCATGGGGAAGGactttttgttttttgttgtacTTATTTGGAGTTGCCATCTGTCCCGTCATTGTTTgtcagtttttttatttatatgATTATAAACATTCCTATGATTTCATCTGTAAATCTAGGCTTTGTTCCCCATTCCTTACATAtatgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccatcattgaaaataagaatttgttcttaactgactttaactgacttagttaaataaaggtaatatatatatatataacccacAAAGAAGCTGAATGATGAGAAACAAATCAGGAAGGACTATACTGTTAGGGTTTTTGGAATCTCAACAAAAATATGCCCATGTTCTTAAATGTTAAGGAAAATCTGAAGGTGGATGATTTTAACTTTGTGTCTTTCATGTATATGGATACAACCATAAAGTCTTAGCATCATATATTTAGATTTGACACATTTAGGAAAGCCTGTATCTCATTTCTGAACATTTAGTTGCCATGTAAGAAATATTTAGCCTAACATTTGCACATGATTTGGTAAGGTAGTGGAGTGATACAGTGGTATACTTGGTCAACAAAAGCTAAAATCAAATGTGAAGATTAGTTCATAAAATGCTGACCTCAGATTTTTACGCAACATTAATTCAAGAATTCATGCTGTATTGTAACAATCAGTGGGGTcggaaattattgacacccttgataaagatgagcataaatgactgtaaaataaatacaaatattgagCTATATTTTATTCAAAAAAAAgggaaattatattttatacCAACACAATTACTCAGAGAAATAGAtattgtttaacaagtaatacttttTTTCTCAAAGGTAGGGGTCaagattgacacccctgttttcaataccttgcGAGGATGACGGCGCAgagactttttctaaaatgttttatgagttggagaacacaatGGGAGGGATCTTATCCCCATCCTaaatacagaatccttccagatccttgatatccttcatctgcgCTGATcaggactgccctcttcaatgcAAACCACAGGTTTGGCCCTCTGGGCCATTAGATATAGAATTAATTGATCTTTGCTTTTCCATGTACATTGTCTTAATTCTTTTTGAtgtgattttgtatgtttgtatagtgcattaggaaagtattcataccccttaaatttttccacattttgttacgttacagccttattctaaaatgaattaaatcattttttcccctcatca

Function

NR:

description
protein zer-1 homolog

GO: NA

KEGG:

id description
K10350 ZYG11; Zyg-11 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590437.2 False 4767 mRNA 0.48 16 3088039 3142362
XM_021590436.2 True 4767 mRNA 0.48 16 3088042 3142362

Neighbor

gene id symbol gene type direction distance location
LOC110509518 LOC106578716 coding upstream 428663 2656641 ~ 2659376 (+)
trnas-cga-51 NA coding upstream 603686 2484272 ~ 2484353 (+)
LOC118945387 NA coding upstream 737230 2350691 ~ 2350809 (+)
LOC118945463 NA coding upstream 737526 2350395 ~ 2350513 (+)
LOC118945457 NA coding upstream 737822 2350099 ~ 2350217 (+)
LOC110509522 gstt2b coding downstream 22949 3165311 ~ 3170636 (+)
LOC110509523 ppp6c coding downstream 94448 3236810 ~ 3261067 (+)
LOC118945358 LOC106570398 coding downstream 132046 3274408 ~ 3287599 (+)
LOC110509524 LOC106562843 coding downstream 149828 3292190 ~ 3311174 (+)
LOC118945281 NA coding downstream 179797 3322159 ~ 3368426 (+)
G2142280 NA non-coding upstream 2592 3085237 ~ 3085447 (+)
G2142278 NA non-coding upstream 3243 3084440 ~ 3084796 (+)
G2142276 NA non-coding upstream 5075 3082715 ~ 3082964 (+)
G2142214 NA non-coding upstream 82862 3004884 ~ 3005177 (+)
G2142212 NA non-coding upstream 87915 2999441 ~ 3000124 (+)
G2142365 NA non-coding downstream 110224 3252586 ~ 3254631 (+)
G2142386 LOC106562824 non-coding downstream 179396 3318949 ~ 3324094 (+)
G2142440 NA non-coding downstream 256728 3399090 ~ 3401178 (+)
G2142441 NA non-coding downstream 257360 3399722 ~ 3401689 (+)
G2142533 NA non-coding downstream 398820 3541182 ~ 3541398 (+)
G2142277 NA other upstream 4468 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1147048 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1509480 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 1658305 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 2234252 852249 ~ 853787 (+)
G2144385 NA other downstream 1885389 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1892827 5035189 ~ 5035913 (+)
G2144756 NA other downstream 2141499 5283861 ~ 5284603 (+)
G2144802 NA other downstream 2217624 5359986 ~ 5375497 (+)

Expression


Co-expression Network