Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509523 |
| gene name | ppp6c |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 3236810 ~ 3261067 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ppp6c | Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit). |
| description |
|---|
| PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit |
| id | name | namespace |
|---|---|---|
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0001878 | response to yeast | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004722 | protein serine/threonine phosphatase activity | molecular_function |
| id | description |
|---|---|
| K15498 | PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021590440.2 | True | 2555 | mRNA | 0.43 | 7 | 3236810 | 3261067 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509522 | gstt2b | coding | upstream | 66174 | 3165311 ~ 3170636 (+) |
| LOC110509521 | LOC100195713 | coding | upstream | 94448 | 3088039 ~ 3142362 (+) |
| LOC110509518 | LOC106578716 | coding | upstream | 577434 | 2656641 ~ 2659376 (+) |
| trnas-cga-51 | NA | coding | upstream | 752457 | 2484272 ~ 2484353 (+) |
| LOC118945387 | NA | coding | upstream | 886001 | 2350691 ~ 2350809 (+) |
| LOC118945358 | LOC106570398 | coding | downstream | 13341 | 3274408 ~ 3287599 (+) |
| LOC110509524 | LOC106562843 | coding | downstream | 31123 | 3292190 ~ 3311174 (+) |
| LOC118945281 | NA | coding | downstream | 61092 | 3322159 ~ 3368426 (+) |
| LOC118945361 | NA | coding | downstream | 283980 | 3545047 ~ 3555150 (+) |
| LOC110509527 | NA | coding | downstream | 444679 | 3705668 ~ 3731529 (+) |
| G2142235 | NA | non-coding | upstream | 141398 | 3093789 ~ 3095412 (+) |
| G2142280 | NA | non-coding | upstream | 151363 | 3085237 ~ 3085447 (+) |
| G2142278 | NA | non-coding | upstream | 152014 | 3084440 ~ 3084796 (+) |
| G2142276 | NA | non-coding | upstream | 153846 | 3082715 ~ 3082964 (+) |
| G2142214 | NA | non-coding | upstream | 231633 | 3004884 ~ 3005177 (+) |
| G2142386 | LOC106562824 | non-coding | downstream | 60691 | 3318949 ~ 3324094 (+) |
| G2142440 | NA | non-coding | downstream | 138023 | 3399090 ~ 3401178 (+) |
| G2142441 | NA | non-coding | downstream | 138655 | 3399722 ~ 3401689 (+) |
| G2142533 | NA | non-coding | downstream | 280115 | 3541182 ~ 3541398 (+) |
| G2142543 | NA | non-coding | downstream | 299087 | 3560154 ~ 3560397 (+) |
| G2142277 | NA | other | upstream | 153239 | 3083217 ~ 3083571 (+) |
| LOC110509554 | LOC105007341 | other | upstream | 1295819 | 1935597 ~ 1941376 (+) |
| LOC110509295 | LOC106562719 | other | upstream | 1658251 | 1572502 ~ 1618684 (+) |
| LOC110509506 | LOC106562870 | other | upstream | 1807076 | 1271496 ~ 1429741 (+) |
| G2139520 | LOC106562868 | other | upstream | 2383023 | 852249 ~ 853787 (+) |
| G2144385 | NA | other | downstream | 1766684 | 5027751 ~ 5028239 (+) |
| G2144416 | NA | other | downstream | 1774122 | 5035189 ~ 5035913 (+) |
| G2144756 | NA | other | downstream | 2022794 | 5283861 ~ 5284603 (+) |
| G2144802 | NA | other | downstream | 2098919 | 5359986 ~ 5375497 (+) |
