LOC110509523 (ppp6c)


Basic Information

Item Value
gene id LOC110509523
gene name ppp6c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3236810 ~ 3261067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590440.2
TCTTTGTAGAAACTCACTTCGCTTGAGAACAGGAAGTTATACTCAGTTACTTCCGATTTGTCTGCGgttattatttttaaaatggcGCCGTTGGACTTAGATAAGTATGTTGAGATTGCAAGACAGTGCAAATATTTACCAGAAAACGACCTAAAGAGATTATGTGACTACGTATGTGATTTGCTGCTCGAGGAATCAAATGTTCAACCAGTATCCACCCCCGTCACTGTTTGTGGAGACATTCATGGCCAGTTTTATGACCTATGTGAACTCTTCAGAACTGGCGGACAAGTTCCAGACACAAACTACATTTTTATGGGAGACTTTGTGGACAGGGGATACTACAGCTTGGAGACGTTCACGTACCTGCTAGCCTTAAAAGCCAAGTGGCCGGACCGCATCACGCTTCTACGAGGAAATCACGAAAGCAGGCAGATCACACAGGTGTACGGCTTTTACGatGAGTGCCAAACGAAATACGGAAATGCAAACGCCTGGCGATACTGCACTAAAGTGTTTGACATGCTAACAGTAGCTGCTTTGATAGACGAGCAGGTCCTTTGTGTGCATGGTGGTCTTTCACCTGACATCAAGACCCTGGACCAGATCCGCACAATCGAGCGCAACCAAGAGATTCCCCACAAGGGGGCCTTCTGTGACCTGGTGTGGTCGGACCCAGAGGATGTGGACACCTGGGCCATCAGTCCGCGAGGTGCAGGCTGGCTCTTTGGCGCCAAGGTCACTAATGAGTTTGTTCACATCAACAATCTGAAGCTGATCTGCCGTGCACACCAGCTGGTCCACGAGGGCTACAAGTTCATGTTCGATGAGAAGCTGGTGACGGTGTGGTCTGCGCCCAACTACTGTTACCGCTGTGGAAACATTGCCTCCATCATGGTCTTCAAGGACGTGAACACACGGGAGCCCAAGCTGTTCCGTGCCGTGCCCGACTCTGAGCGGGTCATCCCTCCCCGAACAACAACACCTTACTTCCTCTAATTACAAGAGCCATTTTGTTCAGTTCCAAAATAACCCCCAGCCTCTTCCCCTTGCCCCTATCCCTTTTGGTGTTTGCAGTCTTAAGGGAAGGGATTGGTGTAACTAAGAAATATCACAATGGCTTCACAATGGTCTGGTCCACGACCATAGCTCTTGTCCCTTCAATGTTTACAGATCTGAGGGAATGAGATGGGTGTTTTCAATATGATAGAAGCTCCCCTATACCTAATTAGAAAGCTAGGTGGAGCGGTCACTAGTTTGTTTACTTTACGCCTGTCTGATCCTTTCAGATCTACAAACACCAAAGTGATAGATGCTTCAATCAGTCAATTGATTCACATCAGCAGTTGTCGCAAAGTGCTTTAACAGatatccagcctaaaaccccaaaaagcaagcaatgcagatcgtgatgcacagtggctaggaaaaactccagaaaggcaggaacctagagaggaaccaggctctgaggggtggcctgtcctcttctggctgtaccaggtggaTATTATAAGAGTACATGTCCATTttggccagattgttcttcaagatgtttaaACAGTCATAGATGACCAGCGCAGGGTCAAAAAATAGTCTGGCTATAgaaggtgcaacaggtcagcacctcgaGTACATGTCAGTTGGCGGAACAGCAGATGCTTCTGGGCTGAATCTTCTAATGTGTTTAGGGCAGCTATCTATATATTTTGTTATACCTATCTGGTTCCTTGTTATCTGCAAAGAGGTTTAGGTTAACGGTTTTGGGGAACCCCCCAGCTTCTCCCAAGGGGACTTgcatctctctgtttgtctcgaTTTTTGTCTTGAAATATACATTCTCAGACCTTCCCTTGAAAGTATTTGATGTTGCCTAATGTGTTTttatttgcttttttttttttttttttacagataacATTGCTGCATTGTATGAATTGAGTCAAAAGTCCTGTTGGCCCCTCATTTCAATTGAAGCCCCATCTTCATACATTACTACGTGCCAATGCACCTGCTTTAATTTATACTCCCTCAAATTCCATTCGATGGTAGTAAATGGGACATGCATTTCCAATAAAATTGAATTGTATGAATACTCAATGTTCTGCAGCTTTGTGCACATTTAAGTCATTCATCTGCTCTGCTTCTTTATAGGGTTATCATATGATGTCTCGGAGTGAATTCCTTTGATTGCACTGTGTCACAGAATTCCATGTTAACTATTGAATGGAGTTTCAGTGGTGTGTTTTGAGTGTTATTGTTCCAACTGGGTCGATATTGCAATTATGCTAAAAGCATGTCACCTGATAATATGGTCTTTCTCAGATGTAATCTATAGAAAACTTATTTCCACCAAAGACAACAATTTAAGTATctcgttgttgttttttaaaccaGATCACAGTCGATGGGGACTGAGTGGGTGATGATGCTTTTGTACATTCAAATTGTATTGATTATTGTTCCTATTTTTTTCTGCTCTGATTTGTTGTATTTTATTATTGTAGATTGCAACCCATATACCAATTGAAAATAAAAGGCCTTTACTAACTTAA

Function

symbol description
ppp6c Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590440.2 True 2555 mRNA 0.43 7 3236810 3261067

Neighbor

gene id symbol gene type direction distance location
LOC110509522 gstt2b coding upstream 66174 3165311 ~ 3170636 (+)
LOC110509521 LOC100195713 coding upstream 94448 3088039 ~ 3142362 (+)
LOC110509518 LOC106578716 coding upstream 577434 2656641 ~ 2659376 (+)
trnas-cga-51 NA coding upstream 752457 2484272 ~ 2484353 (+)
LOC118945387 NA coding upstream 886001 2350691 ~ 2350809 (+)
LOC118945358 LOC106570398 coding downstream 13341 3274408 ~ 3287599 (+)
LOC110509524 LOC106562843 coding downstream 31123 3292190 ~ 3311174 (+)
LOC118945281 NA coding downstream 61092 3322159 ~ 3368426 (+)
LOC118945361 NA coding downstream 283980 3545047 ~ 3555150 (+)
LOC110509527 NA coding downstream 444679 3705668 ~ 3731529 (+)
G2142235 NA non-coding upstream 141398 3093789 ~ 3095412 (+)
G2142280 NA non-coding upstream 151363 3085237 ~ 3085447 (+)
G2142278 NA non-coding upstream 152014 3084440 ~ 3084796 (+)
G2142276 NA non-coding upstream 153846 3082715 ~ 3082964 (+)
G2142214 NA non-coding upstream 231633 3004884 ~ 3005177 (+)
G2142386 LOC106562824 non-coding downstream 60691 3318949 ~ 3324094 (+)
G2142440 NA non-coding downstream 138023 3399090 ~ 3401178 (+)
G2142441 NA non-coding downstream 138655 3399722 ~ 3401689 (+)
G2142533 NA non-coding downstream 280115 3541182 ~ 3541398 (+)
G2142543 NA non-coding downstream 299087 3560154 ~ 3560397 (+)
G2142277 NA other upstream 153239 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1295819 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1658251 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 1807076 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 2383023 852249 ~ 853787 (+)
G2144385 NA other downstream 1766684 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1774122 5035189 ~ 5035913 (+)
G2144756 NA other downstream 2022794 5283861 ~ 5284603 (+)
G2144802 NA other downstream 2098919 5359986 ~ 5375497 (+)

Expression


Co-expression Network