LOC118945358 (LOC106570398)


Basic Information

Item Value
gene id LOC118945358
gene name LOC106570398
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3274408 ~ 3287599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968277.1
TCTATCTTGTTTCTGTGCAATCCAACCTTAAATGATAAAGAACAATAAAGGGGCAGTATATGGAAATAACTAATTTCATAGTCTCTTTTTGTCAGGTGATGTACCTCAAGGAGATATGCCGGTACCTGAACATCCCTGCCTCCAACCCTCAGAGGCatgaaagtaaaagtaaaagtttttAAACAAAGAAGGTAAAAGTCAGAAGGAAGAGGGTGAACAGGAAGGTGTGGCATGAGGGAACTACAAGTGATCTACAACTCAGCATTTACGTGGGTGTACTGGAGTACGTAATGGTTTTTCAGGGTAGCCAGATGTTGGTACATAAGCTCCACGACAAACAGCTTTCAGCTTTTTTCTTGCTTCGTCAAAGCTGAATACATAACTAAAGTGTCACCCAAGGCTATGGGATTGATGGTACTTCAGGAGAAGATGCTGCTGTCTGCCAGGGAGATGTATGTGGTCTGGGAAGCAGATGGATTCAGAACCAGGAATCCTAATCATGCTCTGCTGAAGTCTTTCATGGAACAGGTCACCAAAGCCTACACCACCCCTGAACTTTACATGCAGAAGAAGTTTCCCTTGTAAAGTCACACACAGGTCACTGTCTGCTCTGGACACGATTTTGATAGGCCACTCGCAGGCAGCGATCCAGTTGAAGAAGCTGAGCGCAATGTTGGGCCACCTCTCACCAGCCAGCACTGATCATGTGATACAACATCAATCCATGCCTGGCCAGCTTCACATGGTGAAGTGACATGACATGGTGGAGTGCTGGGCTCATGTCTTGGCCCAGACACTGAAGTATCCAGCCCTGGGTAATGTGGTGAAAGGTGCCCTCTCCGTCTTTCATGGTACCAGGGTTGAGTCTTTGTTTAGCTGGATGAATGACATCATTGATACACGAAGCCCCAACATGAACATCTCAACGTTCAATGCAAGACAGACTGAAGTACACCCTGCACTCCAAGCAGAAGACTGCAGTGGAGATGTTTAAATGGGAGGATGCAAGGTTTGGGGAGGTGGACAAAAGGCTCTGCAGAAACATCAGGTCAGCAGGAACAGTAGACAAGACACAGTGACAGCAGAGTCTGCTGGAAGACTGAAGACGACATCTCGAGTATGGCTGTCAGCCATCTGGAAGTGCTCAGGAGAGCAAGAGGGCGGCAGCTGAAAGGAGAAGAGGTCAAGGCTCAAGCATGCTGCAAAACAGCGCAAGTGGGCACTTGAAATACTTGTCCGGGCTAAGAAAAAGAAGGCCTGAGTTGGTAGTGAAGAAACTCCGGTATTATGCCCGCTACATTGTAGTTTGTTTACTTCTGAACAAGATGGATCTGGTGAAAGTGCTGGTCAAGGAGCTGTCAGAGGAAATTGAGGACTATACGCAGCGATTCAACACAGAATATCAATTAGAGTGGAATCTGGTCTTACAGGAAGTGGCAGCTTTTGTGGAGGCAGACCCAGTTGTGGTGCTGAACAATGAAAATACTGTGGTCGTCATATCCAATCGGCTGCAGGAGGGGGGCATGTCTCCGTTGGAACAGGGCATGGTGGTTGGTCAGCTCACCCTGGCAGATGCACTAATCATTGGCAACTGCAACAACCAGGTGAAGTTCAGTGAGCTAACCATCGATATGTTCCGCATTCTCCAAGCTTTGGAGCGGGAACCAGTCAATCTGGCTACAACGACATCTAAATATGGAACATTGGCCCTTACCCCATGTCTTCCTTCACAGGAACCCAGCGATAAGCCAGCCAAGAGAGAGAACCCTCACAAGTACCTGCTGTACAAGCCAACGTTCAGCCAGCTCTTCACCTTTTTGTCTGCCTCCTTTAAGGAGTTGCCAGTGAACAGTGTGCTGCTCGTCTATCTTTCAGCTACTGGAGTCTTCCCTACTGGATGCTTGGATTATGAGGGACCATATGACTTTGGAGGAGTCCTCACCAACACGAACCGTGATGTGGTAAACGGGGAAACGGTGCAGAAAAGGAACCAAGCCCAAAAAGAGATGCACTGCCTTCACCCTGGGGACTTGTTCCCTTTCACCCGGAAGCCTCTCTTTGTCATTGTGGACTCCTCCAACAGCACAGCCTATAAGAATTTCTCCAATCTCTTTGGTCAGCCGCTGGTGTGTCTTCTATCTCCCACAGTCTATCCACAGAGCATGCAGGGTTTGTTTGTCACTATTATTTTAGCTTTGTACTCAAACTCAAAATAAATAtaagtttattggtcgcatacacaaaTTTGCAGATCTTGTCTCACGTGCagtaaaatgcttgtgtttctagctccaacagtgcagtaatacctatcaataattcaaataaataaagacataatattgca

Function

NR:

description
protein SCAI-like isoform X3

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968277.1 True 2347 mRNA 0.47 13 3274408 3287599

Neighbor

gene id symbol gene type direction distance location
LOC110509523 ppp6c coding upstream 13341 3236810 ~ 3261067 (+)
LOC110509522 gstt2b coding upstream 103772 3165311 ~ 3170636 (+)
LOC110509521 LOC100195713 coding upstream 132046 3088039 ~ 3142362 (+)
LOC110509518 LOC106578716 coding upstream 615032 2656641 ~ 2659376 (+)
trnas-cga-51 NA coding upstream 790055 2484272 ~ 2484353 (+)
LOC110509524 LOC106562843 coding downstream 4591 3292190 ~ 3311174 (+)
LOC118945281 NA coding downstream 34560 3322159 ~ 3368426 (+)
LOC118945361 NA coding downstream 257448 3545047 ~ 3555150 (+)
LOC110509527 NA coding downstream 418147 3705668 ~ 3731529 (+)
LOC110509530 LOC106562884 coding downstream 834807 4122406 ~ 4124726 (+)
G2142365 NA non-coding upstream 19777 3252586 ~ 3254631 (+)
G2142235 NA non-coding upstream 178996 3093789 ~ 3095412 (+)
G2142280 NA non-coding upstream 188961 3085237 ~ 3085447 (+)
G2142278 NA non-coding upstream 189612 3084440 ~ 3084796 (+)
G2142276 NA non-coding upstream 191444 3082715 ~ 3082964 (+)
G2142386 LOC106562824 non-coding downstream 34159 3318949 ~ 3324094 (+)
G2142440 NA non-coding downstream 111491 3399090 ~ 3401178 (+)
G2142441 NA non-coding downstream 112123 3399722 ~ 3401689 (+)
G2142533 NA non-coding downstream 253583 3541182 ~ 3541398 (+)
G2142543 NA non-coding downstream 272555 3560154 ~ 3560397 (+)
G2142277 NA other upstream 190837 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1333417 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1695849 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 1844674 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 2420621 852249 ~ 853787 (+)
G2144385 NA other downstream 1740152 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1747590 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1996262 5283861 ~ 5284603 (+)
G2144802 NA other downstream 2072387 5359986 ~ 5375497 (+)

Expression


Co-expression Network