LOC110509524 (LOC106562843)


Basic Information

Item Value
gene id LOC110509524
gene name LOC106562843
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3292190 ~ 3311174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968173.1
AATCTATCTTGTTTCTGTGCAATCCAACCTTAAATGATAAAGAACAATAAAGGGGCAGTATATGGAAATAACTAATTTCATAGTCTCTTTTTGTCAGGTGATGTACCTCAAGGAGATATGCCGGTACCTGAACATCCCTGCCTCCAACCCTCAGAGGCatgaaagtaaaagtaaaagtttttAAACAAAGAAGGTAAAAGTCAGAAGGAAGAGGGTGAACAGGAAGGTGTGGCATGAGGGAACTACAAGTGATCTACAACTCAGCATTTACGTGGGTGTACTGGAGTACGTAATGGTTTTTCAGGGTAGCCAGATGTTGGTACATAAGCTCCACGACAAACAGCTTTCAGCTTTTTTCTTGCTTCGTCAAAGCTGAATACATAACTAAAGTGTCACCCAAGGCTATGGGATTGATGGTACTTCAGGAGAAGATGCTGCTGTCTGCCAGGGAGATGTATGTGGTCTGGGAAGCAGATGGATTCAGAACCAGGAATCCTAATCATGCTCTGCTGAAGTCTTTCATGGAACAGGTCACCAAAGCCTACACCACCCCTGAACTTTACATGCAGAAGAAGTTTCCCTTGTAAAGTCACACACAGGTCACTGTCTGCTCTGGACACGATTTTGATAGGCCACTCGCAGGCAGCGATCCAGTTGAAGAAGCTGAGCGCAATGTTGGGCCACCTCTCACCAGCCAGCACTGATCATGTGATACAACATCAATCCATGCCTGGCCAGCTTCACATGGTGAAGTGACATGACATGGTGGAGTGCTGGGCTCATGTCTTGGCCCAGACACTGAAGTATCCAGCCCTGGGTAATGTGGTGAAAGGTGCCCTCTCCGTCTTTCATGGTACCAGGGTTGAGTCTTTGTTTAGCTGGATGAATGACATCATTGATACACGAAGCCCCAACATGAACATCTCAACGTTCAATGCAAGACAGACTGAAGTACACCCTGCACTCCAAGCAGAAGACTGCAGTGGAGATGTTTAAATGGGAGGATGCAAGGTTTGGGGAGGTGGACAAAAGGCTCTGCAGAAACATCAGGTCAGCAGGAACAGTAGACAAGACACAGTGACAGCAGAGTCTGCTGGAAGACTGAAGACGACATCTCGAGTATGGCTGTCAGCCATCTGGAAGTGCTCAGGAGAGCAAGAGGGCGGCAGCTGAAAGGAGAAGAGGTCAAGGCTCAAGCATGCTGCAAAACAGCGCAAGTGGGCACTTGAAATACTTGTCCGGGCTAAGAAAAAGAAGGCCTGAGTTGGTAGTGAAGAAACTCCGGTATTATGCCCGCTACATTGTAGTTTGTTTACTTCTGAACAAGATGGATCTGGTGAAAGTGCTGGTCAAGGAGCTGTCAGAGGAAATTGAGGACTATACGCAGCGATTCAACACAGAATATCAATTAGAGTGGAATCTGGTCTTACAGGAAGTGGCAGCTTTTGTGGAGGCAGACCCAGTTGTGGTGCTGAACAATGAAAATACTGTGGTCGTCATATCCAATCGGCTGCAGGAGGGGGGCATGTCTCCGTTGGAACAGGGCATGGTGGTTGGTCAGCTCACCCTGGCAGATGCACTAATCATTGGCAACTGCAACAACCAGGTGAAGTTCAGTGAGCTAACCATCGATATGTTCCGCATTCTCCAAGCTTTGGAGCGGGAACCAGTCAATCTGGCTACAACGACATCTAAATATGGAACATTGGAACCCAGCGAGAAGCCAGCCAAGAGAGAGAACCCTCACAAGTACCTGCTGTACAAGCCAACGTTGAGCCAGCTCTTCACCTTTTTGTCTGCCTCCTTTAAGGAGTTGCCAGTGAACAGTGTGCTGCTCGTCTATCTTTCAGCTACTGGAGTCTTCCCTACTGGATGCTTGGATTATGAGGGACCATATGACTTTGGAGGAGTCCTCACCAACACGAACCGTGATGTGGTAAACGGGGAAACGGTGCAGAAAAGGAACCAAGCCCAAAAAGAGATGCACTGCCTTCACCCTGGGGACTTGTTCCCTTTCACCCGGAAGCCTCTCTTTGTCATTGTGGACTCCTCCAACAGCACAGCCTATAAGAATTTCTCCAATCTCTTTGGTCAGCCGCTGGTGTGTCTTCTATCTCCCACAGTCTATCCACAGAGCATGCAGGACCAGTCCCAGCGCGGCAGCCTCTTCACACTCTTCCTGTACTGCCCCCTTCTGGCTTTCCTGTCCGTGTGTGGCCTGAGCAGCCTTCGCCAAGGATTGTGGGAGAAGGCTGAGGAGTTTCTATGCAAGGTGTTCCGTGACATTGGCCAGATGATTACACGCTCACGAGCTATAGACCAAGCATTTTTACAGTTCTACGGTGACGAGTTCCTTCGATTGTTACTGATCCGCTTTGTGTTCTGCTCGGCTACACTGAGAATGCACAAGCTCTTCCAGGAGTCCAGGAGCTTCCCAGAATCGTACCCTCAGCTACCTAAACAGGACACGGTGGAGAGCAGCTTCCTGCGGAAGCACGTCCTGGAGCTGGCCGCCATGTTGGATGTGCAGCGCCTCTTTTGGGACGGAGCGCTGGACGTGAACTACTGACTTTTAGCTGACCACCACAACTTTACAAACACAGAccaactacagacacacagaccaccACTATACACACTCTCACAGGGGAGAGTCCTCATCATCTTTCAGAGGTAATCATGTTACTTGTTGAACACACTGCTATAGTGTCTGTTTCTTTGGAACCCAAGACCCCCTTATTTCCCCCACCTTATGTAAAACAATTTTTTAGCATATCAGCTATATTTATTTTGAATAGTCATACAGCTACTTGTGGAAGTCAACAGTGCACCATGCACAATAAAAAACATGAACAAGTCACCCATCTACTTAAATACACATGAGATGAGCATGTTACTCATAAAAACAAACTCAACTCAAATGAACACGTGGTGTAGCTATTTTAGAGGTCTGAGGGCAGCAGGAGGACACATGAAGATATCAAGGGATTTTAAACTTAAAAAGACGTAAAATAGATTAACGTAGTTTTACGACTGCACTGCCTGCAATTGGTTCACTGCAAATGGACTTCAATGCAAGCTGTAGGGAAGTCTCCTCTTCTATGTGTGGGTAGATGTGTTGGCCAAGTTTACTGGCTGTAGGGTTTAGAGAGACCACTGGCATGTTTTTGTTTACCGGACTAGATTTGCTGTTTTTAACATCTAATTCAAACGTAATTGCCTGtaagttgttttttttgttttgtttcagtagTCCTTTCTGTAAAACTGAGGCCTGGAGGGGTCAACTAACAGATGTCTATGCAGACCCTAATGAACAGTTTAGCCCTTTCTAGAAACCGCCCCTACTGCGTAGGCACTAGCTCTTACTCTCTAGGTACTAACATAGGGTGGTGGGGCAGTCAGCGGCTCTGGGTCTGCAAACATGTCAGCTCCTGTAGTGCAGTGACTGGGCAAGCGGGTGGTCACTAATCTATTTTCACTGTCTGTTACTCCTTGTATCAGAGGAAGTTTTCGGACTGGGTTTAACATGGGTATAGGCTTAAGCACCCTGCAGGTACACAGCTACCCACCCTCACACAGGCTAAATAGAAAAACCTTGCCCAATCATCTGCTTTTTCAAAGAATTCACTTGAGGAACCAGGGTGGCTCTTTTCAAAGATTTTCCTTTGGCCTTGATTGGATTTCATAAGATGTTGGCAGCATATCTTGTGAGACTCGAGCATTGTAGGGTTGGAAGCGGCCTCTTTCTCTTTGCTGTAGCCTATATGTTTTGGGAAATGCATCTCAATAGTCATACGTATTCTTTCCTTTACCTGCACTCTCCTGACCAGTTCTTTCAGACCAGTGGAAATTAAGTAAAGTGGGGATATTCTATTGAGATTCACCGCTCCTGATTCAAAATCTGTTGGCTTCTGGGAAATGTACGACTTTCAGAGGCCCTGTGTCATTCTTCATTCCTAAGCCCCCATAATGATTATTCCTTTAAGTGGATTTCTGAAGCATGATGGTTTACTGGAGAGATGAGACATGCtgcttttttcccccctcttTGGCTTCTCAGTATTACTGTCCATAGAGTTTACTCAGTCGAGTTCATGTTAGCCTGATGGCAGATGAGTTCCAGCATTAGCCGTGCAGTCTGTGCCCTGCATGGCATCAAGCATAGTCTTGTTTCCTTATATTGATGGGGGCTTGAAGCAATGGAAACGGCTAGTGCTGAAACAGACCCCCAGGGCAATCAGTTTTAAGTACGTGTGATGAACAAAGATGGCCAAACAGATTCTGTTTTCGTATTCactgagatgttttatttatttctgtgTATATTTATGTATAATTGAAAATAACAGTATGTAATAGAGAGATGTTTGTCTTTTGTACATATGTCATATAGTGTATTGTATTACCTGTGAAAAAGATATCCTGTTAGCATAGCAATTTAATGAATGAACTGCACATTCTCTAATCCGGGCCCCCCATTAGTTGTTTTGGTCAAGTTCAGCCAGCATACATTCCAAGGACATGGGGAGAGCCAGGGGAAAACTGACATTTCTTCCCATTGTAGCATTGACCGCAAAAGTGGATCATTTCAACATgggaaattatatttttgtttatttgttgACATTTATGATGATATCAATTGTATCCTTGCACTTTACTGTATTGAATGATGATCTAATCTCATTTGCCGTGCTGTCGGTAAAAAATACATGCCAGACCATCCATTCCATTGTTCCCTAtgccaggggttcccaaacttgttTGGTCCGGGTCTTGTGAtagcaaattcatcagggaccCCTTCAAAATCAGAACATGACTCCGACTTTAGACTGCATTTAAAAATGGCATACAAGGAGTTTTACTATGACTTCTGCAGCAGATGGCAGGACTAACCAAGTCTCGGGCCCTGGGAAATTACATTTGAGTCCACATTTTGACCTTTTAAATCTTAATGACAGTGCATACGTACATTTTATTTTGAAGCATAGAGTTGAAAACTAGATCATTAATGGAGTACTGTGGATCCCTGTGAGCCCTGTTGTGCATTTAAGGACTAGATTCAATCCGTATTGCAGAAGATTCATAATAAAAATGGTGCCGA

Function

NR:

description
protein SCAI-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968173.1 True 5110 mRNA 0.45 16 3292190 3311174

Neighbor

gene id symbol gene type direction distance location
LOC118945358 LOC106570398 coding upstream 4591 3274408 ~ 3287599 (+)
LOC110509523 ppp6c coding upstream 31123 3236810 ~ 3261067 (+)
LOC110509522 gstt2b coding upstream 121554 3165311 ~ 3170636 (+)
LOC110509521 LOC100195713 coding upstream 149828 3088039 ~ 3142362 (+)
LOC110509518 LOC106578716 coding upstream 632814 2656641 ~ 2659376 (+)
LOC118945281 NA coding downstream 10985 3322159 ~ 3368426 (+)
LOC118945361 NA coding downstream 233873 3545047 ~ 3555150 (+)
LOC110509527 NA coding downstream 394572 3705668 ~ 3731529 (+)
LOC110509530 LOC106562884 coding downstream 811232 4122406 ~ 4124726 (+)
LOC110509300 NA coding downstream 858928 4170102 ~ 4207105 (+)
G2142365 NA non-coding upstream 37559 3252586 ~ 3254631 (+)
G2142235 NA non-coding upstream 196778 3093789 ~ 3095412 (+)
G2142280 NA non-coding upstream 206743 3085237 ~ 3085447 (+)
G2142278 NA non-coding upstream 207394 3084440 ~ 3084796 (+)
G2142276 NA non-coding upstream 209226 3082715 ~ 3082964 (+)
G2142386 LOC106562824 non-coding downstream 10584 3318949 ~ 3324094 (+)
G2142440 NA non-coding downstream 87916 3399090 ~ 3401178 (+)
G2142441 NA non-coding downstream 88548 3399722 ~ 3401689 (+)
G2142533 NA non-coding downstream 230008 3541182 ~ 3541398 (+)
G2142543 NA non-coding downstream 248980 3560154 ~ 3560397 (+)
G2142277 NA other upstream 208619 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1351199 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1713631 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 1862456 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 2438403 852249 ~ 853787 (+)
G2144385 NA other downstream 1716577 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1724015 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1972687 5283861 ~ 5284603 (+)
G2144802 NA other downstream 2048812 5359986 ~ 5375497 (+)

Expression


Co-expression Network