LOC110509529


Basic Information

Item Value
gene id LOC110509529
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4044281 ~ 4062480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471442.2
CTTTCGGTGCTTGCTAGATCGATGCCTTCTGAACTTAAAGGCAAAGTAATAAACTAAACATAAATCGCCGGTTGCTGCTTCAGAGAGCCGTTCGCCTCCGTTATTTCAGCTCCTCCAGCAGAAGCTGCTTCCTCCTGTCTTCCAGATGCTGCTGACCAAGTTGTCCACCATCTGACAGGCGGTTCTGGCTGATGACCTGTCGCCATAGCTGATATAAACCCAGAAGGAATATCTTCCCCAATGATACTGCTAATATTAGTAACTGTACTGATGAGGAACAGGAGGGTAGGCTTATCCATTGTCCCTGAACTGCTTGAAGTGTAGAGTCAAAATGACAGTGCCACTTTGTTACCACTAGTCACATGTTTGAGAAGATGTTCtgcaaaaataataacaatacagAGATGTTCTTGCTCTTCAAGGAGGTTCTGACAATAATATGTTGGAATCCATTATAAAGAAAACCTACAGTAGTTGAACACTTTGTGTAGGTAGTAACCTGTTTGTTGAACGCCAGTGATTCTAAGAACAAAAATAACTGTTACCTGTAGGACAATGTCTATCACAGGTCACCAAGGGTACAATAAGGCATATCcttaataaaatatattttcatggcTAATTGTGCATGCCTCTCATTTTCCACTTAATATGCAATATAGTTATACCTATGGCTTGCATAACCAACTCAGTGCCCTTGTTGTTAGTGTCCTACCTAAGAGTTGAAGGTTGGACAGTTCGATCCCTGAccgagtcataccaaagactgtaaaaatgggaCCCGATGCGTCTCTGCTTGGCACTGATGATAGATTGGGTgtaaggccctgcgatagactagcgtcctatccagggggtgtacttgtacatcaagctgcctcacattacagaaacaggagatatgCTCCTGCTCCTATGAGCCGTTGTGGCTCACACAAGCTAAGGCTCATGCAAATCTCCCCTCTTACTTACTTTGGCTTACAGCTTAAACAGTATTGAGTCAAGGAGTAGCTTTACTGCTCAATAAAATCTGTTGCCACAGTACTGAAGAGGCAGAGCAAGCAGGCTTCTTATCTCGTTGGGATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106601021

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471442.2 True 1086 mRNA 0.43 3 4044281 4062480

Neighbor

gene id symbol gene type direction distance location
LOC110509526 LOC106562882 coding downstream 568854 3449799 ~ 3475427 (-)
LOC110509525 LOC106562824 coding downstream 720164 3317596 ~ 3324117 (-)
LOC110509519 LOC106562828 coding downstream 964061 3065595 ~ 3080220 (-)
LOC110509517 LOC106562762 coding downstream 1221719 2643985 ~ 2822562 (-)
LOC118945570 NA coding downstream 1532410 2511685 ~ 2511871 (-)
LOC110509299 ptpa coding upstream 85980 4148460 ~ 4158891 (-)
LOC110509531 LOC106570883 coding upstream 146386 4208866 ~ 4430679 (-)
LOC118945302 NA coding upstream 162943 4225423 ~ 4229194 (-)
LOC110509302 psmb7 coding upstream 557919 4620399 ~ 4636327 (-)
LOC110509533 LOC106562887 coding upstream 623044 4685524 ~ 4690341 (-)
G2143481 NA non-coding downstream 58966 3983151 ~ 3985315 (-)
G2143328 NA non-coding downstream 147192 3896740 ~ 3897089 (-)
G2143322 NA non-coding downstream 149327 3894730 ~ 3894954 (-)
G2143208 NA non-coding downstream 313309 3730422 ~ 3730972 (-)
G2143164 NA non-coding downstream 367326 3676304 ~ 3676955 (-)
G2143544 NA non-coding upstream 17435 4079915 ~ 4080121 (-)
G2143552 NA non-coding upstream 56052 4118532 ~ 4119309 (-)
G2143556 LOC106562884 non-coding upstream 59644 4122124 ~ 4124729 (-)
G2143581 NA non-coding upstream 71395 4133875 ~ 4134116 (-)
G2143582 NA non-coding upstream 72174 4134654 ~ 4135465 (-)
G2143134 NA other downstream 409041 3628165 ~ 3635240 (-)
G2141289 LOC100380853 other downstream 2394550 1649299 ~ 1649731 (-)
G2141258 NA other downstream 2431072 1598021 ~ 1613209 (-)
LOC110509502 LOC106562868 other downstream 3106372 843748 ~ 937986 (-)
G2144911 NA other upstream 1152603 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 1578996 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1687206 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1744585 5807065 ~ 5807624 (-)

Expression


Co-expression Network