LOC110509299 (ptpa)


Basic Information

Item Value
gene id LOC110509299
gene name ptpa
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4148460 ~ 4158891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967218.1
ttttttttctttctaggCTGACACGGACAGCATTTAATTATCTTTCTCAGAATCACGAGTCTAACATAGTGCAGCATTAGAAGTAGGAGCAGAAGTTGATACAGGATCAGATCGTTTTAAAACCCCGTAACGGTTAACGTTAGGAGTGGGGATATGGTAATCTGACCCTGTGGTTAAGGGAAAGGAAACTCTAGCTATTGGGACACAGCTGACATGCCTTGACAAGACTTGACCAGTCTCAACGTCTACTCTTCAGGCTCCTCCCCTGAAGATGATACACCACATATCCCTGTCGATCAGACCTTCATGGTGCCCAAAAAGGAGATCAGCATGGTTTCTGATAACGGGAAGTGAAAATGTTCCCAGgcGTACACTGATTACATAGGATTCATTCTGATGCTGAACAAATGAGTGAAGgggaagaacacacacactactgttgtGCCGCCTTCTCGTTGACAGAGGGAGAAATTGGGAGAATGGGATCATATTAAGCCACAATGCCTTTGGCTGTTGTTGAGAAGCTTCTGGCTTTGTTGGAGACTCTGGACCAGTCGATAGATGAGACCCCTCCTGCAGACCAGCTCTCTCGCTTGGGCGACAAGGCCTATTGTGCCTGGTATGCCAAGCTCGACCAGgaagcAGAGGCCCTGGTTGCAGCAGTCTTCCCAGAAAACAAGGCTGCTGCAACTCCAGAGATAGCTGTGTATTTGAAGGAGGTGGCGGGCAACTCCACCAGGATAGACTACGGAACGGGtcacaaAGCTGCACTTGCTGTCTTCTTCTGCTGTCTCTGCAAGATCAGAGCTCTCAGGGTAGATGACCAGTTGGCCATCATTTTCAAGGTGTTTGGCAGGTGA
>TU2451580
TAGCAAAGCTGTCTATCAATCAGTGTGAAGATGGGCAATGCCCCCCTCTATAAAGGGTCCCATAATTGTGTTCTTTCCATCATCAGGTTGACAGAGGGAGAAATTGGGAGAATGGGATCATATTAAGCCACAATGCCTTTGGCTGTTGTTGGTGAGCAAACAACCATTCGCTACAGAGTTTTggaaaagtattcacaccctttgtgTTCTTTTCACATGTCT

Function

symbol description
ptpa Predicted to enable peptidyl-prolyl cis-trans isomerase activity and protein tyrosine phosphatase activator activity. Predicted to be involved in mitotic spindle organization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PTPA (protein phosphatase 2 phosphatase activator).

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0019211 phosphatase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967218.1 False 860 mRNA 0.48 6 4148460 4158891
TU2451580 True 222 lncRNA 0.43 1 4157805 4158026

Neighbor

gene id symbol gene type direction distance location
LOC110509529 NA coding downstream 85980 4044281 ~ 4062480 (-)
LOC110509526 LOC106562882 coding downstream 673033 3449799 ~ 3475427 (-)
LOC110509525 LOC106562824 coding downstream 824343 3317596 ~ 3324117 (-)
LOC110509519 LOC106562828 coding downstream 1068240 3065595 ~ 3080220 (-)
LOC110509517 LOC106562762 coding downstream 1325898 2643985 ~ 2822562 (-)
LOC110509531 LOC106570883 coding upstream 49975 4208866 ~ 4430679 (-)
LOC118945302 NA coding upstream 66532 4225423 ~ 4229194 (-)
LOC110509302 psmb7 coding upstream 461508 4620399 ~ 4636327 (-)
LOC110509533 LOC106562887 coding upstream 526633 4685524 ~ 4690341 (-)
LOC110509534 LOC105021738 coding upstream 663302 4822193 ~ 4852134 (-)
G2143590 NA non-coding downstream 2198 4145982 ~ 4146262 (-)
G2143589 NA non-coding downstream 3844 4144244 ~ 4144616 (-)
G2143586 NA non-coding downstream 6452 4141743 ~ 4142008 (-)
G2143585 NA non-coding downstream 6996 4141210 ~ 4141464 (-)
G2143583 NA non-coding downstream 10416 4137065 ~ 4138044 (-)
G2143605 NA non-coding upstream 2711 4161602 ~ 4161829 (-)
G2143834 NA non-coding upstream 35938 4194829 ~ 4197790 (-)
G2143835 NA non-coding upstream 36471 4195362 ~ 4195669 (-)
G2143134 NA other downstream 513220 3628165 ~ 3635240 (-)
G2141289 LOC100380853 other downstream 2498729 1649299 ~ 1649731 (-)
G2141258 NA other downstream 2535251 1598021 ~ 1613209 (-)
LOC110509502 LOC106562868 other downstream 3210551 843748 ~ 937986 (-)
G2144911 NA other upstream 1056192 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 1482585 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1590795 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1648174 5807065 ~ 5807624 (-)

Expression


Co-expression Network