LOC110509300


Basic Information

Item Value
gene id LOC110509300
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4170102 ~ 4207105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509300
ATGGGAGGACAGATTGATGGGCTGGAGGACACTCACAGGACCCTCCACTGGCATCCTGGTCCCCAGGCGGTGATTGTTATCCAGGAGATGATGGGTGCTTGTCTGGGCCAGAATGGTTTCACCTGTGTGGACACCATGGATAACTACGCGTACCTCTGCTCTCCTCGCGACGAGGTCCGCTACATGGGCAAAGACTGCGACAAGCTACGGAGGAGAGGACTGCCAAGAGGAAGTGACCGACTGCATTGACGAGCCGTGTCTAAACAATGGGAATTGGTTTCGAGTGACACTGGGGTTCGAAGAGGATCCTTGTGAAGAGGACTTGGACGAGTGTGCATCGCACCCTTGCCAGAATGGGGCTATCTGCATGGATGGGCTTGGCTCAGTTTCCAGGGCTACAACTGCGAGATTGATATCAATGAGTGTGCCTCATGGCCCCGCGAGAATAACGGAACCTGCATCAATAAGAAGGACCAGTATGAATGTGAGTGCCTAGCAGGTTTCACAGTATTGCTTTCCTTCTATAACAACTCCATCTCCACTCTGACTGAGGTCCCCTCCTGGATGTACCATCATGAGAAAACTGTGAGCTACAGTGCCTACGACATCGGGAGCTTCCACGGCACCAACTTCAGTATCTCCTTTTTTCCTGCGCTCACTGAAGCTCAAAGGCCTGCTCTTCCAGCTGAGGCGACCCAGGGAGGACGGAGAAGTAGGCATGGGGAGAGTCCATCGTCGTGACCACTGGCAAGAAGCAACTTCTCCAATTCGAGGTCCAGTATGGACGAGTGTTCTTTGAGCACACTGGCCTGCGCTACGGAATAGGCGAGGTGCCTGAGGTGGAGGTGCACAATGGAGACCTGGCCTATGTAGGGGTCTCCCCGGGGAGGGGAAGGAGACGCAGGCATGGGAAGGACACTTCAAGGGCTGTCCGCAGGACCTGCGTCTGGACGGGGTGCATCTGGACATGGACGTGTGGAACAGCACACTAAATAACTCAGGAGAGCTGTACATCCCCACCAATGCGGAGCCAGAACGGAGGAGAGTGTACTACTACATGGAATTACTTTGTGTTCGTGTTGCTTTCACCAGGAAGACCTGCGAGACACGTGTCAATGGTGGCCAATGTGTGGACCTGGCTGACGGATATGAGTGTGTGACCAACACTACCTTCGAGATCAACCCAGTGCAGCTCAGTGCAGAGGGTTCCCTGGGCTTGCCGCTGACCCAAGTACCTGGAGCTCCGCACCCGCTCAGAGAAGACTGTGCTGTTCTGAAGCTCCTGCTGATGGGACTGCTGGACTCCTCGATCCGCGTTGAGATGCATGGGAGGCTCAGTGTGGAGGTGCTGACCTTCTCTGACGTGCGCCATGGGGCCGATGGCACCGCTTGCACATATCCATGGCCGACCCGGACAGCGAGACTTCCCACTGGGTTATCACCGTGAATGGCATCAAAGATTACAGCAGCACCCCTGTGGAGGAGGGTGTCCTGCACTTCCTCAACGAGGTAAGGGCAGAGGTTGCTATCGCTGAGAGCTTCTTGGGCTGCCTGGGCGCCATGCGAGTCGCTGGGGTCTATCTACCATTCGTGGATGCCCAACACCCGCTGCAGCCGGCCCGCTTCCACAGAACAGGCGACAAGGATATCCAAACGGATTGTACGAGTGCTGATGTATGCCATTCGGACCCCTGCCGGAACGGAGCTTCGTGCAAGGATCTCTTTAACAAGTTTGACTGCGTATGCAAGCcgggttgggagagagagagcagtgtgaggTGGACACAGATGAGTGCGCCCTGCGTCTACGGCATCTGCACTGATGAGTTGGTTTCAAGTGCGCATGTGACCCGGGGTTCGGGGGTGATACCTGCGAGGAGGACCCGAATAAGTGCGAGGAACACAGCTGTGAAAACGGGGGCACCTGTGTGGATGCGTGAAACAGAGATAAATGAGTGCGAGTCTGTCGGAATGGTGGATCCTAAACAGCCCCAGAAAGAGCGGGTGCCGTGGCTGGTGATAGCCATCCCCCTGGTGTGCCTTGGTGCTCTGGTGTTCACAGTAGGCAAGAAGCGCCAGTCGGGGGGATCCTACAGCCCCAGCGCTCAGGAGGTGGCCGGGGCGCGCCTGGAAACGGACAGCATGCTTAACGTCCCCACTGAGGGGCAACTCATCTGA
>TU2451604
tttatatagtAATTTTCACTCatttttatcaagggtgtcaatcatttcagaccccactgtatatcatgcttgttctgtctgtttaaaatgtccTCATTGTGTTTTCCTCCTCAGGCGTGAAACAGAGATAAATGAGTGCGAGTCTGTCGGAATGGTGGATCCTGTATCGATCGACTCAATAGGTTCTGGTGTGTGTGCCTACCTGGCTACAGCGGCCCATTCTGCCATACAAAAAAACAGCCCCAGAAAGAGCGGGTGCCGTGGCTGGTGATAGCCATCCCCCTGGTGTGCCTTGGTGCTCTGGTGTTCACAGTAGGCAAGAAGCGCCAGTCGGGGGGATCCTACAGCCCCAGCGCTCAGGAGGTGGCCGGGGCGCGCCTGGAAACGGACAGCATGCTTAACGTCCCCACTGAGGGGCAACTCATCTGATCAGTCTAGATCTGATCCAATAACTGTGCTCGGGACATGTGGCTTGGCTGCGTCACGCAAAAATCTGCAAAAGCTCATCTGAGAGCACAGCACTGCTGGCAGGTGCGCAAGACTCACTGA

Function

NR:

description
protein crumbs homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509300 False 2178 mRNA 0.52 7 4170102 4206985
TU2451604 True 549 lncRNA 0.52 2 4206270 4207105

Neighbor

gene id symbol gene type direction distance location
LOC110509530 LOC106562884 coding upstream 45376 4122406 ~ 4124726 (+)
LOC110509527 NA coding upstream 438573 3705668 ~ 3731529 (+)
LOC118945361 NA coding upstream 614952 3545047 ~ 3555150 (+)
LOC118945281 NA coding upstream 801676 3322159 ~ 3368426 (+)
LOC110509524 LOC106562843 coding upstream 858928 3292190 ~ 3311174 (+)
LOC110509532 LOC106562866 coding downstream 267649 4474634 ~ 4485633 (+)
LOC110509354 pde4d coding downstream 539365 4746350 ~ 4777161 (+)
LOC110509536 LOC106562892 coding downstream 745631 4952616 ~ 5021603 (+)
LOC110509539 LOC106562896 coding downstream 962877 5169862 ~ 5257753 (+)
LOC118945351 NA coding downstream 1051108 5258093 ~ 5260025 (+)
G2143576 NA non-coding upstream 23951 4145940 ~ 4146151 (+)
G2143571 NA non-coding upstream 31007 4138840 ~ 4139095 (+)
G2143568 NA non-coding upstream 36810 4133026 ~ 4133292 (+)
G2143545 NA non-coding upstream 55315 4114476 ~ 4114787 (+)
G2143695 NA non-coding downstream 120165 4327150 ~ 4327923 (+)
G2143713 NA non-coding downstream 158336 4365321 ~ 4365754 (+)
G2143745 NA non-coding downstream 214621 4421606 ~ 4422953 (+)
G2143804 NA non-coding downstream 322648 4529633 ~ 4554280 (+)
G2144071 NA non-coding downstream 359314 4566299 ~ 4566674 (+)
G2142386 LOC106562824 other upstream 846008 3318949 ~ 3324094 (+)
G2142277 NA other upstream 1086531 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 2229111 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 2591543 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 2740368 1271496 ~ 1429741 (+)
G2144385 NA other downstream 820766 5027751 ~ 5028239 (+)
G2144416 NA other downstream 828204 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1076876 5283861 ~ 5284603 (+)
G2144802 NA other downstream 1153001 5359986 ~ 5375497 (+)
LOC110509544 LOC106562892 other downstream 1399064 5605462 ~ 5611062 (+)

Expression


Co-expression Network