LOC110509531 (LOC106570883)


Basic Information

Item Value
gene id LOC110509531
gene name LOC106570883
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4208866 ~ 4430679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967220.1
CATCATGCGACTCAAACGTAGCCGAAGATTGGCTTTGTGGTCCATGTCGTTGATAGTGATGCAGAGCGGGGTTGCAGGGCGTGCATGTTTTGCTCTTACAGAACTACAAGTCCTACGGTTCAATTTGCGGTATTAGCGTGATACGCGCGTGGAGACCATGTCGTACCCAGGACTATCTGACGAGCTATCAGAAAAATATCCCTCGAAAAACGGGTCAACGCCGCATATTGTTGACACTAGACGTGGACACTGTGAGAATTAAAGATGGGGTCCCGTATCAAGGACAACCCAGAGGCACCCTTTGAGGTGTACCTGGAAATGACCCACCCTGGAACCGCTGGCTCTGATCCGGAGGTGCGGAGGGGATTCCCCGAGGACTACATCGACCAGgaaACTCTTCAGACAGTCCCCAAGTTCTGCTTCCCCTTCAGTGTGGACAGCTATCTGCCTTGGTTTGAGGTGTTCTACAAGTTTCTCAATATCCTGGCTGACTACACAATCAAAGGCCAGgagagTCAGTGGCGAGAGCTCCTGAAGTCACTTTACACACTCCCCATCCCTGATCCTGGAGTGCCTGTCCAACTTAGCGTGCATTCCTACTTCACTGTGCCTGACACAAGGGAACTTCCCAGCATACCTGAAAGTAGAAACCTAACAGAATATTTTGTAGCTGTAGATGTCAATAACATGCTCCATCTGTACGTTAGTATGCTTTATGAGCGTCGAATCCTCATCTGCTGTAGCAAACTAAGTACTTTAACGGCGTATGTTCATGGGTCGGCGGCCATGATGTACCCCATGTATTGGCAACACGTTTACATTCCCGTCCTGCCTCAGCACCTTATAGACTACTGCTGGGAGAGTCAATCACGTTCGGAGGAGGTCTTCGTGACCCACCGCTCCAGTGCCATGAGACAGTTCCTGCAGAACGCCATCCAGCAGCAGCTCttcaaacagttcaTCGACGGCCGCTTGGACCTTCTGAATGCCGGTGAGGGCTTCAGGGATATTTTCGAGGATGAGATCAACATGGGAGAGTATGCAGGCAGCGACAACAACTACCACCAGTGGCTATTCACTGTCAAGAAAGGGGGTGGAGCTATCTTCAACACAGTGAGGACCAAGGCTAACCCTGCCATGAAAACGGTCTATAAGTTTGCTAAAGATCATGCCAAGGGGATAAAGGAAGTCAAAAGTCGGCTAAAACAAAAGGAGCTGGCAGAGAATGGCTACTCCTCGACAGCAGGCACAGGAGCGGGTACCGGGGAGGAAGACACTACGGCCGGGTCGCCCCCCTCCGCCTGCAGGAAGCCCATCACAGCGCACTTTGGACAGCCCCTCCGAGCCCCTCCCCCTCGACCCCATCCTTCCGGGCTCCAGCGCGGCAACTCGCAGCCCGCCCGTCCATCCAGGCTACTGGTGGCCAAGAGACCTCGCAGCAACGTGGGCCTGGAGAGCAGCCCTGAACAGTAAGACCACCTAGCTACATAATACACACACTGAAAAcgct
>TU2451852
CGCGCGTGGAGACCATGTCGTACCCAGGACTATCTGACGAGCTATCAGAAAAATATCCCTCGAAAAACGGGTCAACGCCGCATATTGTTGACACTAGACGTGGACACTGTGAGAATTAAAGATGGGGTCCCGTATCAAGGACAACCCAGAGGCACCCTTTGAGGTGTACCTGGAAATGACCCACCCTGGAACCGCTGGCTCTGATCCGGAGGTGCGGAGGGGATTCCCCGAGGACTACATCGACCAGgaaACTCTTCAGACAGTCCCCAAGTTCTGCTTCCCCTTCAGTGTGGACAGTCTGTTGGTGAGCCAAGTGGGCCAGAATTTCACCTTTGTGCAGATACAGATATCAAGAGCAAGCAGCGGTTCGGTTTCTGCCGCCTCTCCTCAGGGGCCCACAGCTGCTACTGCATCCTCAGgtgagacc
>TU2451846
CCCAACCCTCTTGGACAGCCAAGTCTTTGTAATTTACTGAATAGCTATGTTTATGTCACCACATTCTATAAggcaaaatgtattgtgtaagaGGGCAGTGAATATGTAAAAGGTGTCTAGCAAATGACCGCAACCATGGCATCATCCTGGATTTCACCCTCTCCTTCGACCACCACATACAAAACCTAAGTCTTCCACCTCCACAACATCTCCAGATGTCCTCCATCTCCGGGCTTGGGACTAAAACCCTCATTCATACATTCATCTCCTCACAAGTAGACTTACTGTAACACTCTTCTCTCTGACATCAACACAAGCTCCCTCTATAATGGTTCAAAACCCTGCAGCCCAACTCCTCACCCACACTAAGTCCTGGCAGCACATCACCCCTGCACATTGCTTTTCCCACAGACTGTAGCGGTTAAACCCGAAAACCAATTAGTAGGAGTTGTCAATGGGTAGGGCCTATGTTTATCTGTGTTCGACTGTGTGATTGTTTAAAGACACCTTTGTAGTGGTCACCAACCATCCTCCT
>TU2451845
CCCAACCCTCTTGGACAGCCAAGTCTTTGTAATTTACTGAATAGCTATGTTTATGTCACCACATTCTATAAggcaaaatgtattgtgtaagaGGGCAGTGAATATGTAAAAGGTGTCTAGCAAATGACCGCAACCATGGCATCATCCTGGATTTCACCCTCTCCTTCGACCACCACATACAAAACCTAAGTCTTCCACCTCCACAACATCTCCAGATGTCCTCCATCTCCGGGCTTGGGACTAAAACCCTCATTCATACATTCATCTCCTCACAAGTAGACTTACTGTAACACTCTTCTCTCTGACATCAACACAAGCTCCCTCTATAATGGTTCAAAACCCTGCAGCCCAACTCCTCACCCACACTAAGTCCTGGCAGCACATCACCCCTGCA
>TU2451847
CGCGCGTGGAGACCATGTCGTACCCAGGACTATCTGACGAGCTATCAGAAAAATATCCCTCGAAAAACGGGTCAACGCCGCATATTGTTGACACTAGACGTGGACACTGTGAGAATTAAAGATGGGGTCCCGTATCAAGGACAACCCAGAGGCACCCTTTGAGGTGTACCTGGAAATGACCCACCCTGGAACCGCTGGCTCTGATCCGGAGGTGCGGAGGGGATTCCCCGAGGACTACATCGACCAGgaaACTCTTCAGACAGTCCCCAAGTTCTGCTTCCCCTTCAGTGTGGACAGACAAGGCACCAAATCCACACTGTCTCTCCCCCACGCCGCAACCATGGCATCATCCTGGATTTCACCCTCTCCTTCGACCACCACATACAAAACCTAAGTCTTCCACCTCCACAACATCTCCAGATGTCCTCCATCTCCGGGCTTGGGACTAAAACCCTCATTCATACATTCATCTCCTCACAAGTAGACTTACTGTAACACTCTTCTCTCTGACATCAACACAAGCTCCCTCTATAATGGTTCAAAACCCTGCAGCCCAACTCCTCACCCACACTAAGTCCTGGCAGCACATCACCCCTGCA
>TU2451849
CGCGCGTGGAGACCATGTCGTACCCAGGACTATCTGACGAGCTATCAGAAAAATATCCCTCGAAAAACGGGTCAACGCCGCATATTGTTGACACTAGACGTGGACACTGTGAGAATTAAAGATGGGGTCCCGTATCAAGGACAACCCAGAGGCACCCTTTGAGGTGTACCTGGAAATGACCCACCCTGGAACCGCTGGCTCTGATCCGGAGGTGCGGAGGGGATTCCCCGAGGACTACATCGACCAGgaaACTCTTCAGACAGTCCCCAAGTTCTGCTTCCCCTTCAGTGTGGACAGCGGCAGCAACCATTGAAGAAACAAGGCACCAAATCCACACTGTCTCTCCCCCACGCCGCAACCATGGCATCATCCTGGATTTCACCCTCTCCTTCGACCACCACATACAAAACCTAAGTCTTCCACCTCCACAACATCTCCAGATGTCCTCCATCTCCGGGCTTGGGACTAAAACCCTCATTCATACATTCATCTCCTCACAAGTAGACTTACTGTAACACTCTTCTCTCTGACATCAACACAAGCTCCCTCTATAATGGTTCAAAACCCTGCAGCCCAACTCCTCACCCACACTAAGTCCTGGCAGCACATCACCCCTGCA

Function

NR:

description
PREDICTED: DENN domain-containing protein 1A isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967220.1 False 1510 mRNA 0.53 18 4208866 4430679
TU2451852 False 427 TUCP 0.55 5 4321899 4430536
TU2451846 False 535 lncRNA 0.45 2 4327282 4327917
TU2451845 False 394 lncRNA 0.46 2 4327423 4327917
TU2451847 False 599 TUCP 0.52 5 4327423 4430536
TU2451849 True 619 TUCP 0.52 6 4327423 4430536

Neighbor

gene id symbol gene type direction distance location
LOC110509299 ptpa coding downstream 49975 4148460 ~ 4158891 (-)
LOC110509529 NA coding downstream 146386 4044281 ~ 4062480 (-)
LOC110509526 LOC106562882 coding downstream 733439 3449799 ~ 3475427 (-)
LOC110509525 LOC106562824 coding downstream 884749 3317596 ~ 3324117 (-)
LOC110509519 LOC106562828 coding downstream 1128646 3065595 ~ 3080220 (-)
LOC110509302 psmb7 coding upstream 189720 4620399 ~ 4636327 (-)
LOC110509533 LOC106562887 coding upstream 254845 4685524 ~ 4690341 (-)
LOC110509534 LOC105021738 coding upstream 391514 4822193 ~ 4852134 (-)
LOC110509535 purg coding upstream 436031 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 637920 5068599 ~ 5124878 (-)
G2143834 NA non-coding downstream 11076 4194829 ~ 4197790 (-)
G2143835 NA non-coding downstream 13197 4195362 ~ 4195669 (-)
G2143605 NA non-coding downstream 47037 4161602 ~ 4161829 (-)
G2143590 NA non-coding downstream 62604 4145982 ~ 4146262 (-)
G2144064 NA non-coding upstream 129994 4560673 ~ 4561262 (-)
G2144072 NA non-coding upstream 135727 4566406 ~ 4566625 (-)
G2144086 LOC106583873 non-coding upstream 145829 4576508 ~ 4577228 (-)
G2144098 NA non-coding upstream 158695 4589374 ~ 4589685 (-)
G2143134 NA other downstream 573626 3628165 ~ 3635240 (-)
G2141289 LOC100380853 other downstream 2559135 1649299 ~ 1649731 (-)
G2141258 NA other downstream 2595657 1598021 ~ 1613209 (-)
LOC110509502 LOC106562868 other downstream 3270957 843748 ~ 937986 (-)
G2144911 NA other upstream 784404 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 1210797 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1319007 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1376386 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1670092 6100771 ~ 6108752 (-)
LOC118945302 NA coding downstream 98088 4225423 ~ 4229194 (-)

Expression


Co-expression Network