LOC118945302


Basic Information

Item Value
gene id LOC118945302
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4225423 ~ 4229194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040416.1
CAGGAAATTATGTCACTTCCTCGGCAGGAAAAACAACTGTGGTTAGCCTGGCAACGCCAGCAAGGAGAACGCATTAGAAAAAAACACACAGAAGACtccaaaaagagagagagcatttaAAATCAGAAGTGGCAaaggagaggggaaaaaaagaaaaaatacagGAATAGGTATGCAAGGATTAGGGGAGAACGGGCATCTGTATCTCCTCATTCAACAGTCAAAGCATTGCAGAGACGTCAGAATGTGACATCACCTATTAACAGGGCTCTCCTCTTTCACACATCTCTCATTAAAgatatcaaaacaaaatacaaaaatgcaAGGAATCAGAAGAACAAGCAAATCATTGCGAAAGTGACCTCTGTGAATACACTGAAGAAGTATAAACTTCAGAAGACGGTGTTGGGCTTTTCAAATAATGAGAGCGAAGTTGGAAAGGGACCTGTGCTCTTTTTTGATGAGGAAGGGAAGCAGAACAGAAACAGAAATAAAAAGGAAAGTGAAGGATTTTTTTCTCAGTGATGATGTAAGTAGTATAACGACCGGCCGCAAACAAACCATGACACGACTAAAGAACAAAATGCACAAGAGGCTTCTGACTGACAATGAAAAAATCTACACAGAAATGTCCTGCCTGAGGAACTAGGTCAGTTGTCCAATACCTCCTTCTGCCACCTCAGGCCATTTTGGGTTGTTACGCCTAATGACACTGATCGTGAAACTTGTCAGTGCAAAACCCATGAGAATTTACAGTTCATGGCAAATTCTCTTCACAGTCTTGGGCTTTTGTCCACCAAAAACCTTGAGGACATGGTCAACTCAAGTATGTGTGACCTGAAATCGAAGCTATGTGCTTATGGTGAATGTAATGATTGCTTCCTCACCACTCATCCAACTCTGAAACCTCCTGGGAATGTAGAAGTTCCTCTGACACAATGGACCTTGGAGAAGATCCAAAAAAGACGAAGAGAAGTGCTCCATGATAATCGGGAAGAGGGAGGTCACAATAACAGAAACTGAACTGGTCAGTCAGTTTCAAGATAGGCTCGCTAAGTTTTAGGCAACACATCTTTAATATCAAGTGACAATACAAGGCCTATAGGGAGCTTAGGGAGAGTCTGAAGAACAATGAGTGCTAGCTGCACATTAACTTCAGCAAAAACTATTCATGCAAATACAGTCAAGAGATCCAGTTCTTGCATTTTGGGGGATCTCACCAGCAAGCCACTCTCCACACTGGAGTGATCTACACTGCTGCAGACCATCCACCAATTGCTTTTTGCTCCATTTCACCATCACAGAGACATGATCCACCTGCCATTTGGGAACACCTTGATCCGGTTCTTGCCATGTTTAAGCAGAAGTACCCTGAAGTCAGCTTCATTTCTTTACTGGGGGGCCGGCTACACAATACAAGTAGAAAGGGAACTTCTACCTACTTGCCACAGAACCACACAAACAAGGCTTTCAAGAGGTCAACTGGAATTTCTTTGAGGCCAGCCACGGCAAGCGGGCACCAGATGGTATTGGAGATGCTCTCAAGAGATCTGCAGATAGAGCAGTGCACCATTGAAATGATATCCCAGATACACAGGCCCTGTACAATGTCCTAAAAGGTCTTAACTCCTCTGTAGAGATGTTCTTCATTACTGAGAGTGATGTTGAGGCAAGAGCAGAGGTAACCCTCCTTCCtccccatacacacatacagtacatacattgaGTATTGGTTGAGTATTGAAATGTTTAAGGTGTTTGTTACTCTTTATATCTTATCATATGCTAACATAACATTAAGGTGAACTGAATGACATCAACAAATTCTTCTGGCCAAGTACAAAGGAAGATATTTTGATGGACAGATAATTTGTCTGATGCCGGAGCCACTGCCTGTCAATAAACACTCTTTGCAGAGGGAAAACTCCACCTGGAAGTATGTGGAAGAGCATTTGGGGTGAAAggggagagcgagggatagaggaagagcgGGACAGGAATGTGTTTTAATGCTAATTCCAATGATTTTGCACCTGCAATGTATTTTTGTCTTGTTGTTTTTCACAATGAATATATAACTAAATAGCAGTTCCAATGTTGTTACTACATGTATTACTATGTAGATATCTCCTCAGTGTTCAGTATTCAGGTTTCAGGGTTTAATTTATGTTCTGTCCCGTTATAGTTGTCCACCCTGTTATCTTGGCATCTTTTTCAAATGAATTCAGTTACATTGTCAAATATCAAGAATTTGTGTAATGTATTTTAAAGGGTAAGACATGGCCGACACCAGAGAATTATAAACCTGGATAAAATATAATTGATACTTGTCTCAATTTAGAAAGATAAGGTGTAAATTAGATGAAGTTCAGTATAAAACCACACATTGTATACAACATCTGTTATTTCTTTATAATTTGACCAGAACAAATGAACAGGGTTGACAAGGGGACACAATAGCTTTATGAAAACGTAAATATGATTAAAATAGTCCAATGAAAGTAATTAAAGACAGGTAAGTGCATGTCTGTAACAGGGTGGGCATATCTTATGGCTGATTCACTGAAAATGGGTTTGTAATGATCTAACTCTTAAGTGCTGGAGCTTGGCCAACATGTTTTTCTAAAAgtctaatattttattttttatagtaAATCACAAAAGGAATACAAATtctgaaataaaaatgtaaaatgttgcgTGTTCCAAATGTTTTGTGATATTGAcccttgtgtctgtctgtgtggtgagcACATGGCATTAATATTGTCTGTTCAATGTCTCATAAAGCTGTGATTGAGAATAGCCTAG
>TU2451859
GGAAAAACAACTGTGGTTAGCCTGGCAACGCCAGCAAGGAGAACGCATTAGAAAAAAACACACAGAAGACtccaaaaagagagagagcatttaAAATCAGAAGTGGCAaaggagaggggaaaaaaagaaaaaatacagGAATAGGTATGCAAGGATTAGGGGAGAACGGGCATCTGTATCTCCTCATTCAACAGTCAAAGCATTGCAGAGACGTCAGAATGTGACATCACCTATTAACAGGGCTCTCCTCTTTCACACATCTCTCATTAAAgatatcaaaacaaaatacaaaaatgcaAGGAATCAGAAGAACAAGCAAATCATTGCGAAAGTGACCTCTGTGAATACACTGAAGAAGTATAAACTTCAGAAGACGGTGTTGGGCTTTTCAAATAATGAGAGCGAAGTTGGAAAGGGACCTGTGCTCTTTTTTGATGAGGAAGGGAAGCA

Function

NR:

description
uncharacterized protein LOC106675782

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040416.1 False 2811 mRNA 0.40 2 4225423 4229194
TU2451859 True 450 lncRNA 0.41 2 4227758 4229168

Neighbor

gene id symbol gene type direction distance location
LOC110509299 ptpa coding downstream 66532 4148460 ~ 4158891 (-)
LOC110509529 NA coding downstream 162943 4044281 ~ 4062480 (-)
LOC110509526 LOC106562882 coding downstream 749996 3449799 ~ 3475427 (-)
LOC110509525 LOC106562824 coding downstream 901306 3317596 ~ 3324117 (-)
LOC110509519 LOC106562828 coding downstream 1145203 3065595 ~ 3080220 (-)
LOC110509302 psmb7 coding upstream 391205 4620399 ~ 4636327 (-)
LOC110509533 LOC106562887 coding upstream 456330 4685524 ~ 4690341 (-)
LOC110509534 LOC105021738 coding upstream 592999 4822193 ~ 4852134 (-)
LOC110509535 purg coding upstream 637516 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 839405 5068599 ~ 5124878 (-)
G2143834 NA non-coding downstream 27633 4194829 ~ 4197790 (-)
G2143835 NA non-coding downstream 29754 4195362 ~ 4195669 (-)
G2143605 NA non-coding downstream 63594 4161602 ~ 4161829 (-)
G2143590 NA non-coding downstream 79161 4145982 ~ 4146262 (-)
LOC110509531 LOC106570883 non-coding upstream 98088 4208866 ~ 4430679 (-)
G2144064 NA non-coding upstream 331479 4560673 ~ 4561262 (-)
G2144072 NA non-coding upstream 337212 4566406 ~ 4566625 (-)
G2144086 LOC106583873 non-coding upstream 347314 4576508 ~ 4577228 (-)
G2144098 NA non-coding upstream 360180 4589374 ~ 4589685 (-)
G2143134 NA other downstream 590183 3628165 ~ 3635240 (-)
G2141289 LOC100380853 other downstream 2575692 1649299 ~ 1649731 (-)
G2141258 NA other downstream 2612214 1598021 ~ 1613209 (-)
LOC110509502 LOC106562868 other downstream 3287514 843748 ~ 937986 (-)
G2144911 NA other upstream 985889 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 1412282 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1520492 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1577871 5807065 ~ 5807624 (-)

Expression


Co-expression Network