LOC110509302 (psmb7)


Basic Information

Item Value
gene id LOC110509302
gene name psmb7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4620399 ~ 4636327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590233.2
ATGGCATCCACCTTGGAGAGTCTGTGGAAGAGCTCACCTGGGAGCACGGCTCCTCAGCTAGCCATTGAGGAAGATGCCAAGTGGCTGGTTCGGGATGCCATCGCGGCCGACATCTTCAACGACCTGGGCTCGGGCAGCAACATTGACCTGTGTGTCATCACCAAGGGCAGGGTGGACTACCTGAGGCCCCACGACATGGCCAACAAGAAAGGGGTCAGAACCGGTAATTACAAGTACAAGCGAGGAACAACCGGAGTCCTGACGAAGGCTGTGACCAAATTGGatctggaggtggtggaggagaccATACAGACTATGGATACCTCTTGAAGCATCACTGTAACATTCTGCTAATTACTATTGTCCCTCCCCAACTTCGCCCTTACTTCCTTCAGTGAAAATGGCATGTTTTTTTCATGGTTTAGAGTAAAACGTCTGAGTTCTTAAGTCTTAAATGTGTCCTAAGTGTTTGAACATGCCGTCTCAAATTGAATTGCTTAGCTGGCAGTTTGACAAatacttttattattattatttaagcTAAAGTTAGATAATATGAATAACAAGTCAATGTCTGTTTtaggaaatgtattttttttttaaacgggaaaTATGAGTTCCTAATATTTAGTAGTCTGCTAGCGAGTTACTTGATCCTGCTGCATAAAACACTTTGGCGCAGACAATGTTTGAGTGGGTCCGGTGGATATCTCTTGGGTGAGTATCTAAAGATCACAGGTCAACAAATGTCTGGTGTTCCAGGATTGTGATTGCAGTCTGTTTGCCAGCTGTCTAGTCAACATAGGACAATCCTCCATATTCCTTGTAAATCAAGTCACCAAAATTCCTTATTTTAACAGCTTACATTGTAGGTTGTGAAATCCAACTCACTGCCTTATGACACAAACACACTTCGGGTAAGAAAGGAATTGAAATGGGGTCTAATGTGAGTAAGAAGCCCCCACACATTTTCCACTCCACTTATCTACTACAAAATGCTAAAAGGGAAACATTTGGAACGAAATTCCACAAATCACAATAATGTCAAATCCTCAAATGAAAGTACAACTACAAAATGAAAGTTATTGCCTACACAATACTTCTGAGTGAAAAATCATCGCAATAAACAATACAGTAGTTGCAAGTGCTAATATTTTACAAGTCTCTATGGTAGAATTGCTAACATTAGTACTGCGTTTTTTGCAGTCTTCTAAACTAGTGTGAGCCACTTGCCCTCTCTATCTAGCATCTTTATGTGTACCTGATTGCATAATGCTCTCAAGGCAGAAACATAATACAATTCAATACAATTAATGAAGTCATAAGTAGACAGTCAGCTGCATTTTCATTGTCTATAAACGCAATTATGGCattagggctgtgacggtcataTACTTTTGGATGAATGTTATTGGTCAGCTAATGTAAATTTACTGTTAATCCGTCTGCATATTTCAGGACATGGCATATGAGGGTGCATTGAGATACTCGATGGGTTGGATGATATTTTTCATGTCAATCCTCTTGAAAAAATGCATGCTTAAACTGGAAATCAACTAATCCTCCGTCGTTAGTGCAATGGAAAGGTAAAATGCTTTAAGTGTTAAGAGTGCGTGGGCGACAAaccaaaatggtgcagtttgagggCATGTGGCAGAGAGTGATGCGGGTGCTGGCTATgagggtgtgagcaggtggg
>TU2452146
AAAATGTCTACTTTGACAGTGTGCCAGACGCAGCCTGGAGGTTTCCGTTTCGAAAATTGATGGGCTAGTTCTTGGTGCTGACATCAGGGCCACAGAAGGCATGATTGTGGCAGATAACTGCTCCAAGATCCACTACATCTCCCCCAACATCTAGAGGAAGATGCCAAGTGGCTGGTTCGGGATGCCATCGCGGCCGACATCTTCAACGACCTGGGCTCGGGCAGCAACATTGACCTGTGTGTCATCACCAAGGGCAGGGTGGACTACCTGAGGCCCCACGACATGGCCAACAAGAAAGGGGTCAGGTAAAGCCAACTACCCACCCAAATGGCCTCATCATTTCCCATAACGTAACATGTTCCCATAATGTTCCACATCAGTAGTCCCCCACAGACTGTCCCATTGCTTGTCTCCATGATGTTCCCTTGGTAGTCCCCAACATGTGG

Function

symbol description
psmb7 Predicted to enable kinase activity and threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within phosphorylation and proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB7 (proteasome 20S subunit beta 7).

NR:

description
proteasome subunit beta type-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590233.2 False 1699 mRNA 0.41 3 4620399 4623436
TU2452146 True 446 lncRNA 0.52 3 4622687 4636327
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509531 LOC106570883 coding downstream 189720 4208866 ~ 4430679 (-)
LOC118945302 NA coding downstream 391205 4225423 ~ 4229194 (-)
LOC110509299 ptpa coding downstream 461508 4148460 ~ 4158891 (-)
LOC110509529 NA coding downstream 557919 4044281 ~ 4062480 (-)
LOC110509526 LOC106562882 coding downstream 1144972 3449799 ~ 3475427 (-)
LOC110509533 LOC106562887 coding upstream 62088 4685524 ~ 4690341 (-)
LOC110509534 LOC105021738 coding upstream 198757 4822193 ~ 4852134 (-)
LOC110509535 purg coding upstream 243274 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 445163 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 891455 5514891 ~ 5523585 (-)
G2144098 NA non-coding downstream 30714 4589374 ~ 4589685 (-)
G2144086 LOC106583873 non-coding downstream 43171 4576508 ~ 4577228 (-)
G2144072 NA non-coding downstream 53774 4566406 ~ 4566625 (-)
G2144064 NA non-coding downstream 59137 4560673 ~ 4561262 (-)
G2144151 NA non-coding upstream 21538 4644974 ~ 4645334 (-)
G2144156 NA non-coding upstream 41327 4664763 ~ 4664999 (-)
G2144176 NA non-coding upstream 55296 4678732 ~ 4680595 (-)
G2144189 NA non-coding upstream 75186 4698622 ~ 4698927 (-)
G2144211 NA non-coding upstream 100048 4723484 ~ 4723886 (-)
G2143134 NA other downstream 985159 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1296303 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 2970668 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3007190 1598021 ~ 1613209 (-)
G2144911 NA other upstream 591647 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 1018040 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1126250 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1183629 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1477335 6100771 ~ 6108752 (-)

Expression

LOC110509302(psmb7) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC110509302(psmb7) Expression in each Bioproject

Bar chart with 19 bars.
LOC110509302(psmb7) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network