LOC110509533 (LOC106562887)


Basic Information

Item Value
gene id LOC110509533
gene name LOC106562887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4685524 ~ 4690341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590451.2
CTGGCTACGTGATGACGTAACCTGAAAGAAATCCGGTGGAACTCGGAAGAGAGGTGACTGTTGTATTCTAAATCAAAAGATCAAAATGAAATCAAAGATCTAGAACCCTGGCTGCCATGGAGTCCGAGGGTAACGTGCTCCGCGTGGATTTCCCAAACTTCTCCGGATCCCTGCTTCAGAAGCTCAACCAGCAACGGCAGAGGGGccagctttgtgacatcatcgTGGTCATCCAGGGCCACCAGTACCGTGCTCACCGGGCCGTCCTGGCCGCCAGTTCGCCCTACTTCTGCGACCAGGTCCTCCTCAAAAACAGTGCCCGCTGTGTTTTACCCGACGTCATGCACCCATGCGTGTTCGAACGCCTCCTCCTCTCTTGCTACACAGGCACCCTGCACCTACCGGCCGGCGAAGTGGTAGCCTTCCTCACTGCAGCAAGCTTCCTCCAGATGTGGCACGTGGTGGACAAGTGCACTGAGCTGTTAGAGGTGGTAGGAAGCGGAACAAGAACATTAGTGCACAAGTCTTCTGGTGGGCTTGGGGACAGGCCTTCCCCTGGGGACAGCAGCTACCACAGCCCTGGGGATGGCTCCATGGACCTGGAGGCCGGCGGAGTAGCAGTGGAGGGCTTTGCCAAGATGGAAATGGATCAGCTCCTGGAGAACAgcttctccccatcctctctgGAGAACAACAGCACCCAGCCCGGCGGCAGCTGCTCTCCGCCGGTCGACCACGACGGCTCAGGTAGCGAGGCCACCAGCCAGGACGGGGATGACGAGGAGGTTGGTGAGGGGGACTACCAGTACTCCAGACCAGCCTACGTCCCACCCAGCATCATGGGCCACAGGAAATGGGTCCATGTGAAGTCAGAGAGGCGTGAGGATTGCGGGGGCGGCGGGGCTCTGTTTAGCGGGGACTCTGCGGTTACTGACCCCGAGCAGATTAACTTTAACCTCTCCCAGGCCTCGGCCAGCAAGAGCTCCCTGGGCCACAGCATCGACGAGAAGCTGGTAGCTCAGCTGGAGGATCGCCTGGAGGAGGACCCGCTGGACTTTTATGGCACATCCATGGAGGGCTTCTCCGCCGACAAGGTCGAAGGGACCCCGCTTGGGCTAAAGAACGACCTGCTAGGAGGTGCAACCGGGTGTGAGGAGAGTGGCGGTGGTTTGGAAGGAAACCCCAGTGGCCTCCAGGAAGAGACTTCCCACTCGGGCTTTGCCTCAGTGGTCTACAAATTGTACCCCTGCCAGTGTGGCAAGAGCTTCACCCACAAGAGCCAACGGGACCGGCACATGAGCATGCACCTTGGCTTGCGGCCATATGGCTGCGCCGTGTGCGGTAAGAGCTTCAAGATGAAGCACCACCTGGTGGGCCACATGAAAATCCACACGGGTGTAAAGCCCTACGAGTGCAGCCTGTGTGCCAAGCGCTTCATGTGGCGGGACAGCTTCAACAGACACACGTCCTCCTGCACCAGGGCCCACCAGGCCCGGACTGCCGTCAACGAGCAGGCTGCCCAGATCTGCTGACCCCAGATCAGATTTCCAACTACAGTTCACCTCGTCATCTCCCACAGTCCCGTATCAGTTTCACTGAGCAGGCTTCCCAGATTTGCTGATCCTGGATCAGATTAACACACTAGCTTGGATGACCACCCTCCAATCAGTTTAGGTGGATATAGGGTTAATCCACCcgttttgatttgaacaaaaccttccatacatatttgcccatTGTAGAAGTGCTCAGAAACAGCTTTTTCTTTTACCTGAATGCCAACATATTCAAAAGATTAAGGTGCTCAAAGTTTACCCATTCTTCATACCCCACCATAGCATaaaacatccatgtcttcatcactggaaaagataaacggaTTAGATTTATATAATTtgaaaagcttacaaacagggttgtcaaactatttgaTATATTTgccatcggttgagacacaacgtgctcttgaatacagggtgggtatAATGGTTTGGCTAATAAATGTAGTAAAATGGGAATAACATTTACATTTCAAGTGGAaccacaaagatggttggaggtccagacatcagagaatgttgacttgaatgggaatatctgttgttttaaattatactgtcaatcctccataggaaacctattgaaatcataggaatttacatttttacatttgtcatttagcagatgctcttatccagagcgacttatgtGTGAGTgcacacattttatttatttttttcatttaaaaataaaaatacttgtCCCTCGTGGGACTCAAAGCCACAATCTTGACGGAGCATAGATAAAATAGATAATTGGAAATATAGATAATAGAATAGACATGACGATTTAAGTGTACATTTAATGGTGGGTTGACCGGTGGTCACCTTTGTGGTAGACTGGTAGTAGTTAAAGTTAACATTTTATTCAATGATCATTTCAGTGGTGTACCTGGTGGTTATTCAGTAgtgagttgcctagttaaataaaggttaaatatgttttattttttaaacccagctaaattgcagtggtctgaagggataggtccattacatttctatgattgaaatgaTACCCACCTTGTATTCTAGAGCAAGTTGTGTCTCAACTGTTGGTGGGCAAAACACAAAAACCTCAGACGATGTGAAATAGAGTCAGAGTTTACACATTTTTAGATAATTGAAGTTAAAGGTTGAAAAAAATGTTTACACTTTTTAACCCTTTGACACGTACCAACAAAAGGGTGTGATCATTGTATtgtggtccctgcagcgtacactcaaaccagtgtgattagaacgcttatttagaacgTCCAGTTTTGATTGACACAACAGTCAGTATTTGAGCTGGCTACACTGTTTTCTCACAGAAACATTTAGCACAatcacagtccttacaaagttatgcaCTGAATGTGACCAGTTTATGTTTGGATGCAATGtccagacattcacagaagtagcaacagcataacacaatcatccaaaccggaaaatgtaggctacattagtcctagcactaactgaggaaagattgaggCCTGTTCTGACTACATATGCacaaatgtctgcatacttgatctgCGGAAACACTGGGGAAGTGCTTGGCTTGGGCTCTCCTCGAAGTGAGAAGTTTGTCCGGTTCAGTAAAgtctcaaacataaattgtccacaacagaaatctcataattaaaattcttcaaacatacatgtattatacaccattttaaagataaacttgttaatcccaccacagtgtccgatttcaaaaaggctttacgacaaaagcatac

Function

NR:

description
zinc finger and BTB domain-containing protein 43-like

GO: NA

KEGG:

id description
K10514 ZBTB43; zinc finger and BTB domain-containing protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590451.2 True 3298 mRNA 0.48 2 4685524 4690341
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509302 psmb7 coding downstream 62088 4620399 ~ 4636327 (-)
LOC110509531 LOC106570883 coding downstream 254845 4208866 ~ 4430679 (-)
LOC118945302 NA coding downstream 456330 4225423 ~ 4229194 (-)
LOC110509299 ptpa coding downstream 526633 4148460 ~ 4158891 (-)
LOC110509529 NA coding downstream 623044 4044281 ~ 4062480 (-)
LOC110509534 LOC105021738 coding upstream 131852 4822193 ~ 4852134 (-)
LOC110509535 purg coding upstream 176369 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 378258 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 824550 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 951111 5641452 ~ 5641777 (-)
G2144176 NA non-coding downstream 4929 4678732 ~ 4680595 (-)
G2144156 NA non-coding downstream 20525 4664763 ~ 4664999 (-)
G2144151 NA non-coding downstream 40190 4644974 ~ 4645334 (-)
G2144098 NA non-coding downstream 95839 4589374 ~ 4589685 (-)
G2144189 NA non-coding upstream 8281 4698622 ~ 4698927 (-)
G2144211 NA non-coding upstream 33143 4723484 ~ 4723886 (-)
G2144212 NA non-coding upstream 33807 4724148 ~ 4724474 (-)
G2144224 NA non-coding upstream 41204 4731545 ~ 4731766 (-)
G2144225 NA non-coding upstream 42249 4732590 ~ 4732872 (-)
G2143134 NA other downstream 1050284 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1361428 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3035793 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3072315 1598021 ~ 1613209 (-)
G2144911 NA other upstream 524742 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 951135 5641476 ~ 5672690 (-)
G2145335 NA other upstream 1059345 5749686 ~ 5755666 (-)
G2145511 NA other upstream 1116724 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1410430 6100771 ~ 6108752 (-)

Expression

LOC110509533(LOC106562887) Expression in all Baseline Samples

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LOC110509533(LOC106562887) Expression in each Bioproject

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LOC110509533(LOC106562887) Expression in each Sample
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Co-expression Network