LOC110509534 (LOC105021738)


Basic Information

Item Value
gene id LOC110509534
gene name LOC105021738
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4822193 ~ 4852134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590453.2
TTAAACCTCATCGATGAAGAAAACGTCGATCAGAGCGGCCATTATACAGCGAGTTTCCTTTGTAGGGGGCGACAGGGAACCAACAGTGCCGTCCCTGCCGCGCCACACGGTGTATACGTGGGACATACAAATACCAGGAAGATTAACTAGCTTTGTATTGAGGATATCGGTACCGACAATAATCAGTGATTAGCTCGTTGATGATAGAGAGCTGCGCATCGTTAAGTTAGCTACAACGCCATCCATAGTTCCGGTTGACGTTATTTCATTACTTCACCATATCCACCAGTTAGCTAAAAACAGTACATCTGATCAGTTTTCAAAATGGACGATAAAGTCTTTACGATGGAATTAGACCAATGGGTCGAGCAACTGAATGAATGCAAGCAACTATCGGAGAATCAAGTGAGAACGCTCTGCGAAAAGGCTAAAGAGATCctgaccaaggagtctaacgtgCAGGAGGTGCGCTGTCCCGTCACGGTGTGCGGAGATGTGCACGGCCAGTTCCATGACCTCATGGAGCTTTTCAGAATCGGGGGTAAATCGCCCGACACCAACTACCTATTCATGGGGGACTACGTAGACCGAGGCTACTACTCGGTGGAAACAGTCTCGCTGCTTGTCGCACTAAAGGTCCGTTACCCAAAGCGCATCACGATACTGCGGGGGAACCACGAGAGCAGACAGATCACCCAGGTGTATGGCTTCTACGACGAGTGCCTGAGGAAGTACGGCAATGCCAATGTGTGGAAATACTTCACAGACCTCTTCGACTATCTCCCCCTGACGGCCCTTGTGGACGAACAGATCTTCTGCCTGCACGGTGGCCTCTCCCCCTCCATAGACACACTGGATCACATCCGGGCACTGGATCGCCTGCAGGAAGTTCCACACGAGGGGCCCATGTGTGACCTGCTGTGGTCAGACCCAGATGACCGCGGGGGCTGGGGCATCTCCCCCCGAGGTGCTGGCTACACCTTTGGGCAGGACATCTCGGAAACCTTCAACCATGCCAACGGTCTTACCCTTGTGTCCCGTGCCCACCAACTTGTCATGGAGGGCTACAACTGGTGTCATGACCGAAACGTCGTCACCATCTTCAGTGCACCAAACTACTGCTATCGCTGTGGCAACCAAGCTGCCATCATGGAACTGGACGATACTCTTAAATACTCTTTcCTTCAGTTTGACCCTGCACCTCGACGCGGGGAGCCCCATGTCACCCGCCGTACCCCCGACTACTTCTTATAAACACCCACTGGCCTGGTGGTGGAGGAAGAAGACTGCAAGACCGCTACAGCAAGCAACAAACCCCCAAAACCTGTGTGCATATGACCTGTTAAAACATGAAAACACTGACATGGACCAAAATGTGCCATATAAGCATTTAGTACATAATACAAATTGCCCTGTGTCTCAGTAATGCAACACAGTGTTCCGTTTGAGCCTTTACTGTAGTTGGCTGCTGTATAATATTGATCGTAATGTTATTTTGTTCATGGGTCTACACAGAGAGAAAGCatccctatatacagtatttccCATTATTGTGTCTGAGCGCACAGGCACTGCCATTGAGGCAATCTCTATTTTGAAGTGGTCGATTTTCTTCACGATTGGCTGATCTCTCCTGATTACCCGGTTGGCCATGATTTCCAACAGGgtcatcggggggggggggggggtcagccaATGAAGTTGGCTAAAAtggccttttggccactagaggcctctctGCAACTGTACATTACTCTGCACAAAAAACGTGATAACTTGCTTACTTTCCCCACCCAAATATCACTGGACAATGATACATTTTCCATTGGCAATGCCTGGAATGTGAATAACGGTATTTTATACAGATGCACAAGCTTACATCCCCAGCCCACTCTTCTTCACCAAACTTCTTCCTACTCTTCCCCTTGGGCTAATCTACCTGTTTATTGTTCCTCTGTATATTTGTCATGAAATGATTACCTCTTTGATGCATTTGAACTAATAAAGTACTTTTAATTGTAAATGACACCAAA

Function

NR:

description
serine/threonine-protein phosphatase 2A catalytic subunit beta isoform

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590453.2 True 2033 mRNA 0.49 7 4822193 4852134
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509533 LOC106562887 coding downstream 131852 4685524 ~ 4690341 (-)
LOC110509302 psmb7 coding downstream 198757 4620399 ~ 4636327 (-)
LOC110509531 LOC106570883 coding downstream 391514 4208866 ~ 4430679 (-)
LOC118945302 NA coding downstream 592999 4225423 ~ 4229194 (-)
LOC110509299 ptpa coding downstream 663302 4148460 ~ 4158891 (-)
LOC110509535 purg coding upstream 14576 4866710 ~ 4871169 (-)
LOC110509538 LOC106562893 coding upstream 216465 5068599 ~ 5124878 (-)
LOC110509542 fbxw2 coding upstream 662757 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 789318 5641452 ~ 5641777 (-)
LOC118945316 NA coding upstream 789717 5641851 ~ 5643016 (-)
G2144300 NA non-coding downstream 1517 4820461 ~ 4820676 (-)
G2144295 NA non-coding downstream 26918 4794692 ~ 4795275 (-)
G2144225 NA non-coding downstream 89321 4732590 ~ 4732872 (-)
G2144224 NA non-coding downstream 90427 4731545 ~ 4731766 (-)
G2144212 NA non-coding downstream 97719 4724148 ~ 4724474 (-)
G2144448 NA non-coding upstream 557 4852691 ~ 4853015 (-)
G2144510 LOC106562892 non-coding upstream 101307 4953441 ~ 4954009 (-)
G2144544 NA non-coding upstream 153857 5005991 ~ 5006226 (-)
G2144548 NA non-coding upstream 158603 5010737 ~ 5010988 (-)
G2144550 NA non-coding upstream 159911 5012045 ~ 5012492 (-)
G2143134 NA other downstream 1186953 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1498097 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3172462 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3208984 1598021 ~ 1613209 (-)
G2144911 NA other upstream 362949 5215083 ~ 5226311 (-)
G2145316 opi-1 other upstream 789342 5641476 ~ 5672690 (-)
G2145335 NA other upstream 897552 5749686 ~ 5755666 (-)
G2145511 NA other upstream 954931 5807065 ~ 5807624 (-)
G2145604 NA other upstream 1248637 6100771 ~ 6108752 (-)

Expression

LOC110509534(LOC105021738) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
End of interactive chart.

LOC110509534(LOC105021738) Expression in each Bioproject

Bar chart with 21 bars.
LOC110509534(LOC105021738) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network