LOC110509538 (LOC106562893)


Basic Information

Item Value
gene id LOC110509538
gene name LOC106562893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 5068599 ~ 5124878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590456.2
AATTCTGCGCAGATCTCTAAACAAGTCGTTGACAATCTAGACAGATACTTAGATCAGTCGTTATGTTTGTAGCTAATTTATATTTGTACTGCAAGGGGAAGTATTGGAACTCGTGGTTATGCAATATACTGGAATTGGGAAAGAGAAGACAGACCTAGACGTGCAATGTTATAGTTTAAGCTGAGTGATGTGAAATCTACATGTCTTTAcgcagctaacgttaactagctagaaAACATGAACCCAACAAGTAAAGATATGAAAGGCATCATGGACAAGTCATCATACCGTTTGCTGCAGCTTCTGTCCTTGGCATGGCTGGCCTGTAGGCCCACCTGTAGTTCTATCACCACCTATGGAACAATAATCCCACAATCTCCATCGGTGGAAATTGGGAAGGAATTCACCGCCACATGTGTACTCTACACAGCTGCTAAAGCCACAGCGGAGGACATCTACTGGAAGTTGAAAAACGTCACAGTGCCCAAAGAGCAGTACACCAAGATAAATGACTCGGCTGTTAGCGtgaccatcaccatcaccaatgAAACGGCCAACTGGTTACTTTGTGAGAAGAAAGGGTCTCCCTTAAACCGAAATCAAGTAATCCATGGGATTCTGTTGACCAAAGGGTATCCCCCTGAGAAGCCTGTGAACCTGTCCTGCATGGCTGTCCAGTCTGGCCAAAAGATTTCCTCCAACGTCACGTGCACATGGCAGCCTGGGACAAGAGATGAGATTCTGAAAACCACTTATACCTTGTTTGGCAGTCTAATTGTCTCAAATAAGAGCAGCAAAGCTCACAGAAGCAGTGGATACATCGACTTCGGCACCTTTCCAAGCTTCATGCAACTTGCTATGTGGGTAGAAGTTGAAAACAAGTTGGGGAAGGTTCGATCTGACATTCTGGATATTTATGCTGCTGATTTGGTGAAAACGAATCCCCCATCAGATGTCAATATTCTTTCCGAGAATAACTTTTCCAGGACACTCTTAGTGAGTTGGAAGCACCCTATCCATGTAACCTATGTAACGCTGAAATACAACATCAGGTTCTGTACTGTGGGCTCTGGAGACTGGACTGAGGTACCCCCAAATGACACTGAAAGCTACAAGGAGTCTTTCCGTCTTCAGTACCTCAAGCCGGACACGGAGTATGTAGTGCAGGTGCGATGCATTCATCATATGGGCTATGGCTATTGGAGTGACTGGAGCGCTAACTCTACCGCCAGGACCCCAGAGGACAAGCCTACAAGTAAGCCAGACCTATGGAGAGTCATCATTCCCAGCCAAGTCAAAAGTGAGCGGAGAGTGCAAGTGATGTGTAAGGATCCAGTGGAGTCCAATGGAAGGATACAGGGCTACAGCATCAAGATCCAAGATGGAAACTGGGAGACGGTGGCGGTCAATGACTCTGACCTGGATTCTAGGTCGCAAGAGAGGAAAATTATCCCCCTTTACCAGATTCCCTGGTCTGACAAGAGAAGAGGCCTCATTGAATTGAAGGCCTGGAATTCTGTTGGCGAGTCTCCCCAAGCGTCTTTGGTCATCCCaaaattgacacaagAGCCCCCTTCGGTGGAATGGCTCAGCTGGTTTACTCAGCAGGGGAGGCTGTGGGTGAAATGGCAGCCCCCCAATGTGACGGCCACAGGGGAGCCCTACAGGTCTGAGGTGACGGAGTACATACTGGAGTGGGTGTCTGTCAGTGATGGCGCTATGGACTGGCAGAGAGAACGTAGGCATACTAGGACGGCAGCCATTAAAGGTAACCTTCAGAAGTTCAATCGCTACAATATATCTGTGTATCCCATGTACTCTGGTTGGACTGGGAAGCCATTGACCATAGCAGCCTTTCTGGAACAAGGAGCTCCGCTGGAGGGTCCCTCTGTGAAAGTGAGGCGGACGGGGAAAAACGACGCTGAGCTAGAGTGGATGGAGATTCCACTGGACAAACAGCGAGGGTTCATCACCAACTACACCATCTTCTTCATCACAGGGGGCAAGGAACACTCAATAGTTGTCTCTACCGACACCTACTCTTACACTGTGAAGCGCATGGCCAGCAACAGCAAGTATGTGGTGCGGGTCATGGCATCTACAGTACAAGGCTCTACAAACAGCTCGGACCTGTCATTCAATACTCTGATGTATGCTCCCGGGCAGATAGAAGCCATTGTGGTGGCTGTGTGCATCAGCTTCCTGTTTTCCGTAGTGCTGACCATGCTCTTCTGCATTTACAAAATGGACTCGATAAAGAAGAAGATCTGGCCACCGGTACCTGACCCCTCCAACAGCACTATCGCTAAATGGTCTCCTGATTTCACATCCAAAGCTGACATTCCTAAGGAGAGCGCGCTGGGTGACGTGAGTATTGTAGAGGTGGACGTGTTTGACAGGAAGTCTCTGTGTGAGGAGGACAAGGCAGGCCTGCCGCTCAAAAAGGACAAATACCTGTCGGAGGAGCATAGCAGCGGCATCGGCGGCTCCTCTTGCCTGTCATCGCCTCACCAGAGCGTCTCAGACAGCGACGAGGGCGGCGACGAGGGCCAGACTACAGCCAGCACCGTCCAGTACTCGTCGGTGGTGGCATCCTGCGGCTACAAGGGCCAGACCCCCTGCCCTCTCCCCCAGTCCGGCTCGTCCCAGACGCCCAGCTTCACCCGCTCCGAGTCCACCCAACCCCTGCTGGACAGCGAGGAGCACCCGGAGGGCCCCGAGTCACAGCGCTACCTGCGGAACCCCTACTTCGGGCGCTTGCCTGGGGGGAACAATGGCGACAGCGGAGACCTGGAGGACTTGAACCAGATGGAGATGAAGAAGCAGGGGTTGGCTTTGCGCCGGTTCTGCCCCCTGGAGGAGGACTTTCAGCAGACCACACCCACAGAGGAGGGTCAGTCACCTGACGGACAGCCAGGCCCTGACCCTAGCTACATGCCTCAGCTCAGCGGCTACAGGCCTCAGTGTTAGGAGGACGTATGGTGACTTAGTTCGAGGTTGTCACACTTCATGTACAGTGATTCTTCCTCTGCGCctttgttcatttcacttttgttccAAACTTTGTCAGCCTATTATTTTTGCACTTACCCAAATGGCAATCATGAACTTCATGTGGGCATCTTGACGTGACTTGTTAAATCACTTTTAAGTGGATGATATAGTTTGCCTGTATGTCAAGGTTTTATTGTTTTAAGATCCTAAAAAGGAAATAGATGCCTACATGCAGACCCGTTTATTTTCAGTTAATTACTGACCTAGGTAGTTGGCGTCACCCATTGACCTCTTAAGAAAAGTCCATAGCCCCTATTCTCTATAAGCCGGCCAAGTTGAACTTTGAATGGACAAAGTGTGATGACGCATCATTCCAAGAAAGAAGACTTGAAGGAAGCGAAAAGGTGATGCTAGCCAATACAACAGGACCCTCTTGAAatgcagtaccttcagaaagtattcataccccttgacttgttccacattttgttacatcctAAATTCTAAAAGGATTCAATATAAACattctcaccaatctacacacaatacccataatgacaaggtgaaaacatgttttttgaaattgtagcaaatttattgaaaatgaaaaagcgatatgatttacataagtattcacacccctgactcaatacatgttagaatcatctttgacagctgtgagtctttctgggtaagtctccaagagcTACGTGCAGCTGGATTGTACAAGTTAGTTGTTGTCATTGctcgacagccattttcaagtcttgcaacTAGTCTTGTAACTAGGCtacacaggaacattcaatgtcatcttggtaagcaactccagtgtatttaTGGacttttgttttaggttattgtcctgctgaaagctgTATTTgtgtcccagtgtctgttggaaagcagactgaaccaggttttcctctattcctctgtgctctattccatttatttatttattttcccccaaaaaactgtagtccttgctgatgacaagcatacccataacatgatgcagccaccaccatgcttgaaaatatgaagtgtggTACTCCGTGATGTGTTGGatatgccccaaacataacgctttgtattcaggacataaattACATTTCTTTGACACATATTTTggtagttttactttagtgctttattgcaaacaggatgcatgttttgaataTTTGTATCCTGTACAGGCTTagttcttttcactctgtcatttaggttagttttgtggagtaactacaatgttgttgattcatcctcagtcttctcctatcacagccattaaactctggtAGAAAGGACGCCTTTAACTTTGTACTGACTGGGTGTATAGatccaccatccaaagtgtaatgaataactttgctaaaaaggatattcaatgtctgcttctttttttttacccatctaccaataggtgcccttctttgtgaggcactggaaaacctccttgctcaactgagggaccttacaagtaattgtatgtgtggggtacagagacgaggtcgtcattcaaaaatcatgttaaatactTATTGCACACAGTGCGTGCATGCATCTTGTGACTTGTTCAGCAaggttttactcctgaactttaggtttgccataaaaggggttgaataattggctcaacatttcagcttttcattttttattcatttgtaaaaatgtcaaaaaaacatTGTTCCTCTTTGaaattatgggctattgtgtgtaggccagtgaaatACGATCTCAATTTAATACACTTTAAATTCAGACtgaaacacaaaatgtggaaaaagtcgaggggtgtgaatactttggaGGCATTGTATGCTACACTAGTAGATGTATGGTTAATGACATATCTTTCCAGATAGAAAAAACAGTTTGACAAATGTACATTTTGCCTTTTCACAATGCCTTATTGACTTTGTGTCATGAATGGAATGAAGAAATGCTATGCAATTTCCCTGCCCATCAAAACTTCTTGTTCGAGGTCAAATATAGAGATATTACTGTTGCATTACAAGTTTTTGTATAATTTGTTTCTGGGAAATGTTTTTCATATTCATTTTTGTGTTGTCATGAATTTTCCGAAGACTGAAAAGTGCAGTATATTTTGTTAATTTGTTTGAGATTCTTTTGTTTGGAACATACGTACAGATCTCAACAGGACAATCTCCAATATTTGTTCCTACAGAGAATATGCTCAGAAAGGGAAGTTGCATGTACAGACCTTTTAAATATTGCTACATTGagggttataaaaaatattctTCCACCATCACTCAGTTAACACTACTTTTCCATATATACGGGAAACAAACATAGCCTAGTACTTCACTGCATGCCACCAGAATACATGTGCCCTTTTTGGAGCATGGTTTGTGAATGTGTGACATTATCCAATATGAAATAAACCAAATGTGTTATCCATGTGAACTAATAATTGACTTCTAAGTCAGCATATCTTTATAGAGCTTTATTTTCAGTGAGACTTTCAACattaatagaacagaatatattaGTCCATCGTACGGGGAGGAAGTAGGAGTTCACAATACAATATTGTTTTGGTGTGCTCGGAAAATAAAAtgtcctctccccctcta

Function

NR:

description
interleukin-6 receptor subunit beta-like

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
K05060 IL6ST, GP130, CD130; interleukin 6 signal transducer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590456.2 True 5600 mRNA 0.44 16 5068599 5124878
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509535 purg coding downstream 197430 4866710 ~ 4871169 (-)
LOC110509534 LOC105021738 coding downstream 216465 4822193 ~ 4852134 (-)
LOC110509533 LOC106562887 coding downstream 378258 4685524 ~ 4690341 (-)
LOC110509302 psmb7 coding downstream 445163 4620399 ~ 4636327 (-)
LOC110509531 LOC106570883 coding downstream 637920 4208866 ~ 4430679 (-)
LOC110509542 fbxw2 coding upstream 390013 5514891 ~ 5523585 (-)
LOC118945317 NA coding upstream 516574 5641452 ~ 5641777 (-)
LOC118945316 NA coding upstream 516973 5641851 ~ 5643016 (-)
opi-1 opi-1 coding upstream 531708 5656586 ~ 5658119 (-)
LOC110509355 LOC106581842 coding upstream 538351 5663229 ~ 5663766 (-)
G2144503 NA non-coding downstream 24326 5044131 ~ 5044273 (-)
G2144567 NA non-coding downstream 32859 5035535 ~ 5035740 (-)
G2144562 NA non-coding downstream 38835 5029552 ~ 5029764 (-)
G2144561 NA non-coding downstream 39102 5029101 ~ 5029497 (-)
G2144560 NA non-coding downstream 39551 5028561 ~ 5029048 (-)
G2144689 NA non-coding upstream 27382 5152260 ~ 5152477 (-)
G2144911 NA non-coding upstream 91439 5215083 ~ 5226311 (-)
G2144912 NA non-coding upstream 91602 5216480 ~ 5219637 (-)
G2144913 NA non-coding upstream 92300 5217178 ~ 5225429 (-)
G2144915 NA non-coding upstream 96996 5221874 ~ 5224262 (-)
G2143134 NA other downstream 1433359 3628165 ~ 3635240 (-)
LOC110509525 LOC106562824 other downstream 1744503 3317596 ~ 3324117 (-)
G2141289 LOC100380853 other downstream 3418868 1649299 ~ 1649731 (-)
G2141258 NA other downstream 3455390 1598021 ~ 1613209 (-)
G2145316 opi-1 other upstream 516598 5641476 ~ 5672690 (-)
G2145335 NA other upstream 624808 5749686 ~ 5755666 (-)
G2145511 NA other upstream 682187 5807065 ~ 5807624 (-)
G2145604 NA other upstream 975893 6100771 ~ 6108752 (-)

Expression

LOC110509538(LOC106562893) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110509538(LOC106562893) Expression in each Bioproject

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LOC110509538(LOC106562893) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network