Gene
RNA
| Item | Value |
|---|---|
| gene id | opi-1 |
| gene name | opi-1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 5656586 ~ 5658119 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| nidogen-2-like |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0008233 | peptidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124445.1 | True | 304 | mRNA | 0.54 | 4 | 5656586 | 5658119 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118945316 | NA | coding | downstream | 13570 | 5641851 ~ 5643016 (-) |
| LOC118945317 | NA | coding | downstream | 14809 | 5641452 ~ 5641777 (-) |
| LOC110509542 | fbxw2 | coding | downstream | 133001 | 5514891 ~ 5523585 (-) |
| LOC110509538 | LOC106562893 | coding | downstream | 531708 | 5068599 ~ 5124878 (-) |
| LOC110509535 | purg | coding | downstream | 785417 | 4866710 ~ 4871169 (-) |
| LOC110509355 | LOC106581842 | coding | upstream | 5110 | 5663229 ~ 5663766 (-) |
| LOC118936257 | opi-1 | coding | upstream | 12569 | 5670688 ~ 5672530 (-) |
| LOC118945331 | LOC106581842 | coding | upstream | 17426 | 5675545 ~ 5677433 (-) |
| LOC118945330 | opi-1 | coding | upstream | 25828 | 5683947 ~ 5685159 (-) |
| trnas-gga | NA | coding | upstream | 36049 | 5694168 ~ 5694249 (-) |
| G2145302 | NA | non-coding | downstream | 39905 | 5616457 ~ 5616681 (-) |
| G2145236 | NA | non-coding | downstream | 54290 | 5602056 ~ 5602296 (-) |
| G2145206 | NA | non-coding | downstream | 85959 | 5569831 ~ 5570627 (-) |
| G2145205 | NA | non-coding | downstream | 87042 | 5568477 ~ 5569544 (-) |
| G2145163 | NA | non-coding | downstream | 97639 | 5558744 ~ 5558947 (-) |
| G2145326 | NA | non-coding | upstream | 36801 | 5694920 ~ 5703431 (-) |
| G2145328 | NA | non-coding | upstream | 38359 | 5696478 ~ 5788606 (-) |
| G2145336 | NA | non-coding | upstream | 50622 | 5708741 ~ 5748540 (-) |
| G2145342 | NA | non-coding | upstream | 86178 | 5744297 ~ 5751728 (-) |
| G2145344 | NA | non-coding | upstream | 93181 | 5751300 ~ 5753868 (-) |
| G2144911 | NA | other | downstream | 430275 | 5215083 ~ 5226311 (-) |
| LOC110509531 | LOC106570883 | other | downstream | 1226050 | 4208866 ~ 4430679 (-) |
| G2143134 | NA | other | downstream | 2021346 | 3628165 ~ 3635240 (-) |
| LOC110509525 | LOC106562824 | other | downstream | 2332490 | 3317596 ~ 3324117 (-) |
| G2141289 | LOC100380853 | other | downstream | 4006855 | 1649299 ~ 1649731 (-) |
| G2145335 | NA | other | upstream | 91567 | 5749686 ~ 5755666 (-) |
| G2145511 | NA | other | upstream | 148946 | 5807065 ~ 5807624 (-) |
| G2145604 | NA | other | upstream | 442652 | 6100771 ~ 6108752 (-) |
| G2145618 | LOC106591448 | other | upstream | 482947 | 6141066 ~ 6148494 (-) |
| G2145542 | NA | other | upstream | 491457 | 6137289 ~ 6252866 (-) |
