LOC118945526


Basic Information

Item Value
gene id LOC118945526
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6143189 ~ 6187507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118945526
attattttttgtaaaaaaaaaaaaaaatctgttcttatcagtttaatatctgatacgtcccccatcgggggactacatattaaatggatttttcgaacagggagtcggaaatggggcttgctccgtccgctccacgcatcgacccggtattgcagtacctccgggaacggtgcaacactt
>TU2453520
tcgggggactacatattaaatggatttttcgaacagggagtcggaaatggggcttgctccgtccgctccacgcatcgacccggtattgcagtacctccgggaacggtgcaacacttttctcccgttgtcaagggaaaatgcacattcacaaagctatgtaaacagctggctagctagctagctagctggctggctagcagaagaagagaaggaaagaaacattcaaactgaaagaaaggcgaagcgctcttcaatggggtcccccgtttcccgccattttacttaaaaaaaaaaaaaaaaaaaaaaaaaaatttggggccaggattgtgtgtgtgtgtgtgtgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctcagagatgggccaggatagtgacttaaagacgcattagcgactttttccaaaaaacacctgcctgtttgttgc

Function

NR:

description
LOC569167 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118945526 False 180 mRNA 0.47 1 6143189 6143368
TU2453520 True 473 lncRNA 0.47 2 6143253 6187507

Neighbor

gene id symbol gene type direction distance location
LOC118945665 NA coding upstream 5380 6137693 ~ 6137809 (+)
LOC118945646 NA coding upstream 11480 6131593 ~ 6131709 (+)
LOC118945525 NA coding upstream 11984 6131026 ~ 6131205 (+)
LOC118945645 NA coding upstream 17832 6125241 ~ 6125357 (+)
LOC118945537 NA coding upstream 18284 6124721 ~ 6124905 (+)
LOC118945647 NA coding downstream 390 6143758 ~ 6143874 (+)
LOC118945521 NA coding downstream 6145 6142925 ~ 6156408 (+)
LOC118945666 NA coding downstream 6774 6150142 ~ 6150258 (+)
LOC118945535 NA coding downstream 12479 6155847 ~ 6162064 (+)
LOC118945572 NA coding downstream 13082 6156450 ~ 6156566 (+)
G2145454 NA non-coding upstream 38105 6096989 ~ 6105084 (+)
G2145442 NA non-coding upstream 106418 6024094 ~ 6036771 (+)
G2145438 NA non-coding upstream 109813 6020891 ~ 6033376 (+)
G2145444 NA non-coding upstream 110632 6026460 ~ 6032557 (+)
G2145437 NA non-coding upstream 125966 6012823 ~ 6017223 (+)
G2145479 NA non-coding downstream 66606 6209974 ~ 6216576 (+)
G2145358 NA non-coding downstream 102507 6245875 ~ 6279016 (+)
LOC118945546 NA non-coding downstream 134806 6278174 ~ 6297190 (+)
G2145650 NA non-coding downstream 160688 6304056 ~ 6304258 (+)
G2145424 NA other upstream 220883 5914627 ~ 5922306 (+)
G2145270 NA other upstream 459969 5668304 ~ 5683220 (+)
LOC110509544 LOC106562892 other upstream 533044 5605462 ~ 5611062 (+)
G2144802 NA other upstream 767692 5359986 ~ 5375497 (+)
G2144756 NA other upstream 858586 5283861 ~ 5284603 (+)
G2145469 NA other downstream 39143 6182511 ~ 6219942 (+)
G2145472 LOC106591448 other downstream 44279 6187647 ~ 6194757 (+)
G2145368 NA other downstream 45204 6188572 ~ 6232498 (+)
LOC118945315 LOC106593246 other downstream 126856 6267751 ~ 6274178 (+)
G2145733 NA other downstream 375322 6518690 ~ 6519140 (+)
LOC118945540 NA coding downstream 2246 6189753 ~ 6189943 (+)
LOC118945649 NA coding downstream 2806 6190313 ~ 6190429 (+)
LOC118945565 NA coding downstream 5157 6192664 ~ 6192848 (+)
LOC118945650 NA coding downstream 5895 6193402 ~ 6193518 (+)
LOC118945550 NA coding downstream 11653 6199160 ~ 6199332 (+)
G2145685 NA non-coding downstream 150364 6337871 ~ 6339506 (+)
LOC110509307 LOC106562924 other downstream 464526 6640782 ~ 6664348 (+)

Expression


Co-expression Network