XLOC_004032 (CR555295.1)


Basic Information

Item Value
gene id XLOC_004032
gene name CR555295.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13798453 ~ 13800802 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007692
GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGGACACAGAGCCAGAAGATATTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGCAGATGATGTTGCCACTCTTCAGACCAACCtaaatgtaag
>TCONS_00008775
GACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTGTAAGTGCATTAAAATCACATTTGACATTAGCACATTAACAGTCTGCTGCAGTTACTgactatttgatttttttaacctCCTGTAGCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGCAAGTTTGCATTTgagattatttatttcaaaatgtataaccCTTGTTCACAATTCAtactattcatttttttatggtCTGTTTGTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAAGTAATTATTTAGCATTCAATCATATCACTGATTAAAGGGGGGCATATTAAACTTTATGGAGTTTACCATGGAGTTTCTCTTTTTGTGTGCAATATTGGAATTCATGCAGGTAATTAATCTTTGAAGTTACaaaacagtttgttcccttaAAGAAAAGTTTGTAGCACTGTTTTCACCTCTGTAAAGGATGCTACATTTTCATCACTTAGTCTTTAGTAGAACAACCATGACTGAGTCCGGCTGACCAGGGAGTGAAAACAGGTGCtgcaacaataattataaagcaaatttcatttttaataattaaaacatgttgGGAATTTCTGGTCAAAATGACTAACCTGTGAATAACCATAATTAATGCCCTTCAATTGTAAAGTGGTGCCACCTGTCATCTCTCAGGGTCTGAGCATCTGGTTTAATGTGACAATAGCTGATGacctatggcaagccgttttaacttttattctatagcccgtactagtatctattttcttGTTACTAGTACTTATCCATTTTCTTAGTTCTTTTCCATTAAGTACTAACTAGTACTTaattattagttactagtacttattttaatagtgactagtaactattctgttgttactcgtaatgaattaaaaattttccCATTCATTTCTATGGGATCTTTAATTGAGATATcaactattcagttttgactagtatgtaTTCCAGCTGTGACTAGTGCATATTTTTATCTACTAGTAGTTAATCATTAGGTACTAGTACCTATTACTGAGATGCTACTACCTaattaatagatactagtacttatgtattagatactagtccttattcattaggtactagtacttattaaatagcttactaatgtttattcatgtagagttgatgcttaacagataatcaattcactatttgctaatgcttaataaatgattcattattataaaagtgttagctgaaatgttttataaatagaaGGTATATAAATGACTGTGTTACTGACATTACTACCTTCAGTTTCCAAATTAAGTtgctttgcctttgctttttttaCCTTGCTTTTTGGAGATGTTTGTGATTTAGCAGTAAAAATAGTTTTTCATCctctttttatgtttctttttactGCAGGACACAGAGCCAGAAGATATTTGCACAATAGAGATGGAGATGGACATCCTTAGCACTGTTGC
>TCONS_00007693
GCACGAGGTGTCCTCTCACCAGCAGCAGCTGCCATCTCCTGATTCAGgtTTGGAATGCAGTGTAAGTTTTGCAAATTTGTAAACAGTAGCTGAGAAGTTACACTAGACTACATCGCTATCAAGGACCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTAAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTTTGGGAGTTTAGGTCTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATATCTTCTCTTTTTCGGATGAATACGCTATCAAGTTTTATGGATCATGTGGTGGGCGATATGGAGAGATAATAAGAACCGCCCTGGACCAACTGGACAATCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104802

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007692 False 148 lncRNA 0.49 2 13798453 13800802
TCONS_00008775 False 1622 lncRNA 0.34 1 13798492 13800113
TCONS_00007693 True 369 lncRNA 0.44 4 13799676 13800802

Neighbor

gene id symbol gene type direction distance location
XLOC_004031 sid1 coding downstream 180041 13616015 ~ 13618412 (-)
XLOC_004030 si:ch211-1a19.2 coding downstream 187321 13605623 ~ 13611132 (-)
XLOC_004029 BX530062.1 coding downstream 315666 13482671 ~ 13482787 (-)
XLOC_004028 mast3b coding downstream 456970 13280248 ~ 13341483 (-)
XLOC_004027 elovl1b coding downstream 645929 13094179 ~ 13152524 (-)
XLOC_004033 tmem259 coding upstream 270887 14071689 ~ 14102158 (-)
XLOC_004034 NA coding upstream 346861 14147663 ~ 14148426 (-)
XLOC_004035 NA coding upstream 508095 14308897 ~ 14311237 (-)
XLOC_004036 NA coding upstream 630120 14430922 ~ 14432200 (-)
XLOC_004037 adora1a coding upstream 866264 14667066 ~ 14669026 (-)
XLOC_004019 CR450764.8 misc downstream 1106762 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 1176686 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 1207157 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 1285191 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 1298191 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 2326580 16127382 ~ 16127678 (-)
XLOC_004024 CR450764.5 non-coding downstream 1042178 12756143 ~ 12756275 (-)
XLOC_003997 NA non-coding downstream 1307174 12429383 ~ 12491279 (-)
XLOC_004038 CR550307.1 non-coding upstream 892679 14693481 ~ 14695864 (-)
XLOC_004039 NA non-coding upstream 954103 14754905 ~ 14759088 (-)
XLOC_003998 NA non-coding downstream 1333044 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding downstream 1333967 12463700 ~ 12464486 (-)

Expression


Co-expression Network