LOC118945279


Basic Information

Item Value
gene id LOC118945279
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6605317 ~ 6607608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040394.1
GGGTTATCACGCCTACTGACTTTAGGTCCTCAGCCCACTGAAGCCAAAGACCTACTGGGAAAGGGTCACGGGGTGGCAGGGGGTGGGAAGGGATGAGACAACATGCAAGAGCAATCTGCAGTGCAACCACCACTGCAAATATAGGAGAGTTTGATCCTTTCAGACCAATGAAAAAGAAAGAGTTGGAAAGAGTCTTGGGTTTCTGTAAAAGTACTTAAAACGCCTTCAGACCGGCCTACCTTTGAGagcgtttttttttcttcttaataTCGGCTAGGCAGGGTGTGACTATTACGGAGATCTGTGAATCTGGCTGAAAATTCTGACGGAAACATCTGTCAACATGCAGACAGGAAATAATCCAGGCAGGGTGTGACTATTACGGAGATCTGTGAATCTGGCTGAAAATTCTGACGGAAACATCTGTCAACATGCAGACAGGGGTGTTGTACAGTCAGTCAATCACATTGGAAATGTACCTTTTCTTCCCATTCCTGGCAGGCTTCAGAGATCCATCATCCAAGAAATTTACAGGACCGGTCCAATTTCCTGTCTCGTCTCCTTTGAGTCGGCTAAACTGTTGCGCACTAGTAAGAAAATTAGGCAGTTTATTTGGGATTTATTGTGCTTTAATTACCTGAGAactaacagtcagtcagtcagtcaaacacacacacacacacacacacacacacttttatacacaatgcacaaacacacacagagacacaccacagCATACAGAGGGATCAGCATTTGGCTTTAGTAAACCAAATCAAACTAAGCCAAACATAGTTAGAATGAACCTAGATAATAACACAATGGTTGATAACAAATCTAGAGCATAAAACGGACAATGAAACTCAGTTACACATTTGTCATAAATAAAACACccgtaaaaaaaatctaaattagtTGGGGATAAAAAAGAAGAGGGGGCAAATAAATAATGGACAAATGTGCCTTGCatgtcaaatattcaatcttacCAAAGAATGATGATAGGCTACATTGAGAGCGAGAACAATTAAACAAGCAAAAACAGCAGCTAAAAATCTGAAGGGGACAAATAAGTTCAAGCTCAGACACAGCTGAATGACGAAGTGTATATGGGTCTGGCAATCTGGTGTGGTTGGCACAGATACCTCAAATCTGAGAATGGCATGCAAAGCAGACACACACTTctatctctgctgcagagcagTGGGACAGAAAACACTTGGTTTGAAAACAGTGTGTAAATATGCTACGTCTGTTTATGAGATGAAATAAAGATGCTTCACTTAATCCATTCATTGTGGTCAAACAGGTCAAATCTCAGTTGTTGTCTCACTAAAACCCCTAATCATTCACCATTTTAGGGGGTTTTGCCCAATATGCAGCACATCTTAGTTCGGTAGATTAGCCTATAGGGTATTATTGCACATTACGCTCATGCACAATCTAAAAACCACAACACATTCTTTAAATCAGAACCAAATGATTATGGTTAACGGGTTACATAGAGAACAGACAAACTGAGAGGATACTTAACGGTTTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040394.1 True 1541 mRNA 0.41 3 6605317 6607608

Neighbor

gene id symbol gene type direction distance location
LOC110509559 NA coding downstream 10875 6579264 ~ 6594474 (-)
LOC118945709 NA coding downstream 11422 6593817 ~ 6593895 (-)
LOC118945553 NA coding downstream 708233 5896903 ~ 5897084 (-)
LOC118945579 NA coding downstream 708795 5896406 ~ 5929252 (-)
LOC110511721 NA coding downstream 777405 5827044 ~ 5827912 (-)
LOC110509561 LOC106562926 coding upstream 62568 6670176 ~ 6688054 (-)
LOC110509562 LOC106562929 coding upstream 81934 6689542 ~ 6712436 (-)
LOC110509564 LOC106562930 coding upstream 149002 6756610 ~ 6763472 (-)
LOC110509566 LOC106562932 coding upstream 159469 6767077 ~ 6771817 (-)
LOC110509308 LOC106563009 coding upstream 304833 6912441 ~ 6943779 (-)
G2145970 NA non-coding downstream 27210 6577296 ~ 6578107 (-)
G2145995 NA non-coding downstream 60066 6543343 ~ 6545251 (-)
G2145978 NA non-coding downstream 63953 6528972 ~ 6541364 (-)
G2145981 NA non-coding downstream 73503 6526715 ~ 6531814 (-)
G2146023 NA non-coding upstream 18357 6625965 ~ 6626598 (-)
G2146033 NA non-coding upstream 34772 6642380 ~ 6642806 (-)
G2146037 NA non-coding upstream 42303 6649911 ~ 6650333 (-)
G2146047 NA non-coding upstream 54235 6661843 ~ 6662157 (-)
G2146049 NA non-coding upstream 57111 6664719 ~ 6665023 (-)
G2145542 NA other downstream 352451 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 456823 6141066 ~ 6148494 (-)
G2145604 NA other downstream 496565 6100771 ~ 6108752 (-)
G2145511 NA other downstream 797693 5807065 ~ 5807624 (-)
G2146036 NA other upstream 41570 6649178 ~ 6649663 (-)
LOC110509586 LOC106562956 other upstream 1523175 8130783 ~ 8168089 (-)
ttc33 LOC106568686 other upstream 2757604 9365212 ~ 9437537 (-)
G2151189 NA other upstream 4110413 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 4343641 10923070 ~ 10969315 (-)

Expression


Co-expression Network