LOC110509307 (LOC106562924)


Basic Information

Item Value
gene id LOC110509307
gene name LOC106562924
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 6640782 ~ 6664348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509307
ATGTCTCGGGGGACAGGCGGCATCAATGGTGCCAGCTCAGACTCCAAGGTGTTTGTCAAGCTGTACGGGAAGAAGGGCGACCCCACAGGATCCTCCTGGTGGTCTCTGACAACGGCCTGAGTAACTACTATGAGACAGGGCAAACTGATCTCTTCACCGTAGAGACCTATGACATCGGTCTGCTGATTGGCCACACTAAGGGTCTAGGTGCTGTTTGGTTCCTGGACAGTGTGCAGATCATTGTGCCAGTCCATGGATAGCAGTACAAGTTCCCAGCCACTGCTGGCTCTGTAAGGATGAGGCTGATGGGAAGATGGAGGTAGAGATCTACCCCAACGAGACTCTGAACATCGATAAACTGATAAACTATGAGATCACAGCGGTTACGGGGAGCATGCACAAAGGTGGCACCAACGTCAATGTGTTCTGTCAGATCTATGGAGAGGACGGCAAGACTGAGCTCATCTGCCTCAAGAGCCGCTCCTACCACTTTGAGCGCGGGACCACAGAGATATTTAAATCTCTCACCCCTCAGATCGAGGTACTGAATGTGTGCAAATTATTCAAGATCTGCATTGGGTACGACGGTTCTGGTATGGGCGACGGGTGGTTCCTTGAGACGGTGGACGTCAAAGTGAGGACGTATTCTCCATCCCGGGCCATCAATCTGGGCGTTCTGAAGAAGCTGAGGATTCGCCATGACAACAGCCAGCATCATGCCGCCCTGGTTCCTGGACTAGGTGGAGATAGTGGACAACAAAGACAACACCACtgtttCGGTgcacgcatggctctcgaccttcgcctatCCCGAGTCGGTACCGGAGTtggagcgatgggacaagaccgtAACTACCAATTTAGATATCACAAAAATGGGGAGATCACGAAAAAGACtgagagaccgacagacagacacacacacagtccttgtGATATGATGTGTTATGCCTGTGCAGCGGCCGCAGCAGGCTGGTTCCTTGACTGGGTAGAGGTTGAACGCCCCGTCCCTGGGCCAGATGCTACGGTTCCCCTGTGGTCGCTGGCTGTACAAGGGAGAGGAAGAACGACAACGGGACTATCGTCAGGGACTTGTTCCCTGCAGACCTCCAGACTGATTTCGACAAACCATTTGTGCCATACGAGAACAAAACCAGTGACCTGTTTGCTGCGGGTACAGATGCAGACGTGTTCACCGTGCTGTACGGTCGAGGCGGGGTGTGCACCCAGCAGAGGACTCTCTGTGTCAACAAGACATGTTCATCGTTGAGGTACAACCACACATTGGAGGACATGGGCGACGTCATAGAGAAGATCTATAGTGGTCATGACAGCTGAGGGAGAAACTGAGGCTGGTGTCATTACCTGGGGTCGGAGACTATCGTCTTCCCTTGTGAGTGTTGGCTGGCCAAGTCAGAGGATgacggagagacagtgagagaattAGTACCTTCTGACATCATAACGGAGAAACTACTACGAGACGGAACCCTGAAAGTCAGCGAGATTGAGGTGGAAGATGCACTGGaTGTGTCCACCTACAATGTGTCTGTGATGACGGCTGACGTTTACAAAGCGGGCACAGATGCCAACGTTTTCCTCACCATCTACAGAGACCTGGGCGGCACGGGTGAACACAAACTCTGCAAGGTTGAGACAAACAGCAACAAGTTTGAGAGGGGAGCGGTGGATACATTTTCCGAAGAGGCGGTGGACCTGTACCAGGTGTTTAGAATTAAGATTCgccatgacaacagcatggtgaGTGCTGATTGGTACCTGGACCACGTAGAGGTGGTTGATGAGGATCTgcagATCATCTATGAGGTGACGGTGGTGATGGGAGATGTTCTGAATGCAAGTGCAGACACCCAGATCTACCTGTCTGTGTTCTGGGCTAACATCACTACAGAGGGGATCTTGCTGCAGAATAatgaggacagGATTGAGCGGGGTCAGGAGGACATGTTCACCCTGGAGGTCGAGGACATTGCTCCCCTGAGGAAGATGAAGGCTCGTATCGACGGCTCTGgcgCAGTCACTGACGCCAACATGAGGATCATTGTGTTTAGGGAGAGCTGTGACACTGGGACCTTGGCTCTGAAATCCAACAAGTTTGATCACAAGCAGACCGACGTGATCCATTTCCCTGATGTGCTCCGCATCGGGGAGCTCTCCAAGGTCCGGGTGTGGCACAACAACTCAGGACCACAGATAATGTGTCGGAGTTCACCTGTGAGGACCAAAGGGCACAAGAGGACCATGATATGTGAGATGGCTGCcgtggtggaagaggaggagatggtggagagCACCACCTACATTATCCAGGTTAAGACCAGCGACATCGGAGgcgCAGTCACTGACGCCAACATGAGGATCATTGTGTTTAGGGAGAGCTGTGACACTGGGACCTTGGCTCTGAAATCCAACAAGTTTGATCACAAGCAGACCGACGTGATCCATTTCCCTGATGTGCTCCGCATCGGGGAGCTCTCCAAGGTCCGGGTGTGGCACAACAACTCAGGTCAGCCAATAAGTCATCAGGAATATGATGCCATGACCTGGAGGGGAGCCAATTGCAATCACAGTGAACAAGTCAAAATAAGAAACCTGCATACCTATTGgttctatcaaatcaaatgttatttgtcacatgtcttgtaaacaacaacaagtgtagacgaacagtgaaatgcttacttacgggcccttctcaA
>TU2454066
agtgtgtcaagaagcagtgtttCGGTgcacgcatggctctcgaccttcgcctatCCCGAGTCGGTACCGGAGTtggagcgatgggacaagaccgtAACTACCAATTTAGATATCACAAAAATGGGGAGATCACGAAAAAGACtgagagaccgacagacagacacacacacagtccttgtGATATGATGTGTTATGCCTGTGCAGCGGCCGCAGCAGGCTGGTTCCTTGACTGGGTAGAGGTTGAACGCCCCGTCCCTGGGCCAGATGCTACGGTTCCCCTGTGGTCGCT
>TU2454067
TACAAGGGAGAGGAAGAACGACAACGGGACTATCGTCAGGGACTTGTTCCCTGCAGACCTCCAGACTGATTTCGACAAACCATTTGTGCCATACGAGAACAAAACCAGTGACCTGTTTGCTGCGGGTACAGATGCAGACGTGTTCACCGTGCTGTACGGTCGAGGCGGGGTGTGCACCCAGCAGAGGACTCTCTGTGTCAACAAGACATGTTCATCGTT
>TU2454074
AGATCATCTATGAGGTGACGGTGGTGATGGGAGATGTTCTGAATGCAAGTGCAGACACCCAGATCTACCTGTCTGTGTTCTGGGCTAACATCACTACAGAGGGGATCTTGCTGCAGAATAatgaggacagGATTGAGCGGGGTCAGGAGGACATGTTCACCCTGGAGGTCGAGGACATTGCTCCCCTGAGGAAGATGAAGGCTCGTATCGACGGCTCTGgcgCAGTCACTGACGCCAACATGAGGATCATTGTGTTTAGGGAGAGCTGTGACACTGGGACCTTGGCTCTGAAATCCAACAAGTTTGATCACAAGCAGACCGACGTGATCCATTTCCCTGATGT
>TU2454073
AGGATTGAGCGGGGTCAGGAGGACATGTTCACCCTGGAGGTCGAGGACATTGCTCCCCTGAGGAAGATGAAGGCTCGTATCGACGGCTCTGgcgCAGTCACTGACGCCAACATGAGGATCATTGTGTTTAGGGAGAGCTGTGACACTGGGACCTTGGCTCTGAAATCCAACAAGTTTGATCACAAGCAGACCGACGTGATCCATTTCCCTGATGT
>TU2454084
GGCACAACAACTCAGGTCAGCCAATAAGTCATCAGGAATATGATGCCATGACCTGGAGGGGAGCCAATTGCAATCACAGTGAACAAGTCAAAATAAGAAACCTGCATACCTATTGgttctatcaaatcaaatgttatttgtcacatgtcttgtaaacaacaacaagtgtagacgaacagtgaaatgcttacttacgggcccttctcaACAAagcagaaagaaaaagagagaaataatagaaaaagaatcacacaaggaataaatacacaatgaataacaataatt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509307 False 2720 mRNA 0.36 18 6640782 6664271
TU2454066 False 289 lncRNA 0.54 1 6646033 6646321
TU2454067 False 219 lncRNA 0.53 2 6646327 6646783
TU2454074 False 343 TUCP 0.52 3 6652033 6658524
TU2454073 False 215 TUCP 0.53 2 6652544 6658524
TU2454084 True 285 lncRNA 0.36 1 6664064 6664348

Neighbor

gene id symbol gene type direction distance location
LOC110509560 LOC106562923 coding upstream 18277 6599060 ~ 6622505 (+)
LOC118945571 NA coding upstream 327729 6312938 ~ 6313053 (+)
LOC118945669 NA coding upstream 330435 6310231 ~ 6310347 (+)
LOC118945566 NA coding upstream 330716 6309887 ~ 6310066 (+)
LOC118945577 NA coding upstream 336181 6304485 ~ 6304601 (+)
LOC118936374 NA coding downstream 3406 6667677 ~ 6673995 (+)
LOC110509565 LOC105006106 coding downstream 62082 6726353 ~ 6756968 (+)
LOC110509567 LOC106562933 coding downstream 133832 6798103 ~ 6816600 (+)
LOC110509572 LOC106562939 coding downstream 449517 7113788 ~ 7188400 (+)
LOC110509573 fcho2 coding downstream 527369 7191640 ~ 7288353 (+)
G2145782 NA non-coding upstream 14197 6626375 ~ 6626585 (+)
G2145735 NA non-coding upstream 59479 6545366 ~ 6581303 (+)
G2145737 NA non-coding upstream 67576 6563240 ~ 6573206 (+)
G2145739 NA non-coding upstream 77603 6558476 ~ 6563179 (+)
G2145738 NA non-coding upstream 80602 6556467 ~ 6560180 (+)
G2145809 NA non-coding downstream 86 6664357 ~ 6664560 (+)
G2145810 NA non-coding downstream 390 6664661 ~ 6664970 (+)
G2145877 NA non-coding downstream 110046 6774317 ~ 6774563 (+)
G2145917 NA non-coding downstream 184056 6848327 ~ 6848627 (+)
G2145733 NA other upstream 121642 6518690 ~ 6519140 (+)
LOC118945315 LOC106593246 other upstream 367289 6267751 ~ 6274178 (+)
G2145368 NA other upstream 408284 6188572 ~ 6232498 (+)
G2145469 NA other upstream 420840 6182511 ~ 6219942 (+)
G2146821 NA other downstream 1335858 8000129 ~ 8000490 (+)
LOC118945282 NA other downstream 2293532 8957803 ~ 9032295 (+)
G2149183 NA other downstream 2709729 9374000 ~ 9374512 (+)
LOC110509604 LOC106562973 other downstream 3638417 10064167 ~ 10309768 (+)
G2150729 NA other downstream 3797482 10461753 ~ 10462220 (+)
G2145805 NA non-coding downstream 2942 6661466 ~ 6661683 (+)
G2145472 LOC106591448 other upstream 457276 6187647 ~ 6194757 (+)

Expression


Co-expression Network