LOC110509586 (LOC106562956)


Basic Information

Item Value
gene id LOC110509586
gene name LOC106562956
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8130783 ~ 8168089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590563.2
CTGTGGCGCTTTATACTGCCCATCTCTGCAGAGGAACTTAAATGCTTGTGCCACCGGAAACCATTGAATTTCATATCGGAACCACTACATGAGGCTGCCTGCACCATCGTCGACTGAAAAGTGTTGTCATATTTTGTCGTTCACGGTTGCGTTATTTTAACCCAGAGAACGAGTTGTGCACCACCGGTGTTGGCCTTGGAAGTTGAAATGTCAGCCGGTGCCACAGTGCCGCTCACGCTTTCTCACTAGCCACGGTAACGTCAGCTTTTGCTGCCAATATCCTCGCAGGAATCAGTATGGATGCGCTCTGGGTATTCCTAATGCTGCTGGTCCCACTTCTGCTATGGACTAGCAGCACCTTTGTTTTTTATTTCAAAAAGTGTTTCTACGTGGCTTATATGATGGTTTTGGGTGCGATTGCGATTCCGCTTAGTATTCTGAAATGCGGAGGCAGGGACGTTGAAAACATGAGGGTGGTCCGTGCTCTGGTTCGTCATGTTAAGTACTTCCTGGGTCTGCGGTTCGATGTGAGTGGCTTGGAACACCTGCAGACAGAGGGACCCTACGTCATCATCTCCAACCACCAGAGCTCCTTGGACGTTCTGGGTCTAATGGAGGTTCTCCCAGATCGTTGCACCATGATTGCCAAGAAGGAGCTGGTGTACGCGGGCACGGTGGGCATTGTGTCCTGGCTGGGCGGCATCGTCTTCATCAACCGCAACAAGACCAGCGATGCCAAGAGCGTCATGGCCGACGCTGCCAAGACCATGCTGGACGACCAGATCCGGCTGTGGGTGTTCCCTGAGGGCACACGGAACCAGAGGGGCGACCTGCTGCCCTTCAAGAAGGGAGCCTTCCACCTGGCAGTGCAGGCACAGGCTCCTATCATCCCCATTGTGTTCTCATCCTACAGTAACTTCTACCTACGTAAAGAAAAGCTGTTCAACTCGGGGACCATCAAGTTGAAGATCCTTCCGAAGATCGAGACGAAGGGCATGACGTCAGACGACGTGGCCGGCCTCTCCGACAAGTCCTACGGCCTCATGCGCTCAGTCTTCCTGAGCATCTCTGGCTTCGCCCCCTTAACCCAGAGCAACGGGCCCCCCTCACACCACTGAACATTTCCCATGTCCGAGACACCAAAACCTACCCTACctatttaaaatgtttatttctcCCCCGTCCTCCGCATCGTCCCAGCTCCCTACCTACGTACCCAATGTTTAggtcaaatatattggcacccttaaGGTGCAGAATGTTCCATTTTCTCTTTTCAAAACTGTTTGAATGGACCTGCAACTTACCACAGGTGTGAGATAAATTACACAACGAGATATTGCCTCTAATCAAGAGTCCAGGACATTTTTCTTTGaaatgtgcagttgtaaacaCCGTTTTCAATTTCAACTTGTTTTTGAAGAAATAGAGAGTtgtgcaagggtgccaatatatttgaccACATCTGTACCAGGATACAACGCACACACCAGGCCTCTGTCATGAACTCATCTGTTGTTTTGGCCTGGTATAGTTTGGTTCTGGTTGGCTCCTGCTCTGAGCCAGCCCCCATACAGTGCAGTCCTGACTCCTCACGACAGAAGACCTGTTGGCTCTGCAGGTTATGAGTAGAGTGACGGACCGACGGCAAGCGAAACGGAACATTATTAATGTGCGTTCATCATGCATGCTTGGGGATACCTTTTTTTCTACCTCCACCTTTTTAAAAGAGGCtttattgttattgtattttattttttaaatgtttacatttCAGTGGTGGTACTTTCGCTTTTTTTCCCTTCCTTCTGGCTCAACTTTTTTGTTTTTTCATATGTTGACGGTGGATATTTTTATTTTCCTCTGGTGCTGCcttaactttttttttcttaatGTGCTATAAAAGACACGCACAGCACACAACCACCCTGCTTTAACACACGCAAAC
>TU2456440
AACCATTGAATTTCATATCGGAACCACTACATGAGGCTGCCTGCACCATCGTCGACTGAAAAGTGTTGTCATATTTTGTCGTTCACGGTTGCGTTATTTTAACCCAGAGAACGAGTTGTGCACCACCGGTGTTGGCCTTGGAAGTTGAAATGTCAGCCGGTGCCACAGTGCCGCTCACGCTTTCTCACTAGCCACGGGTGGTCCGTGCTCTGGTTCGTCATGTTAAGTACTTCCTGGGTCTGCGGTTCGATGTGAGTGGCTTGGAACACCTGCAGACAGAGGGACCCTACGTCATCATCTCCAACCACCAGAGCTCCTTGGACGTTCTGGGTCTAATGGAGGTTCTCCCAGATCGTTGCACCATGATTGCCAAGAAGGAGCTGGTGTACGCGGGCACGGTGGGCATTGTGTCCTGGCTGGGCGGCATCGTCTTCATCAACCGCAACAAGACCAGCGATGCCAAGAGCGTCATGGCCGACGCTGCCAAGACCATGCTGGACGACCAGGTACCGAGGCGTTCCTCGAGGAAGCCGATTTGTTCGCTGAGTGAGTCGATGCGGTCCAGCTGCTGGAAGGAGTGAGACAGGAAGCTGGTCTTCTCAGACACGCCCTCGTCCAGCGACATGGGGAACAGACTGGTGAAGGGGGCTAGGACCAACTGGAGCTTctggagggaaggggggagagagattcaATTCTACTGTAATCCACGGAGCATTAGCAACATGTATTCTAATGAAAAACTCATAAAGGCTTTTAAAAGGACAAGGAGGGGTGAGCTGGGCTGGAGTCCAACCAGTCACCAAGTGTCCCCCTGCTCCCCACGACAGGTCCCCAGAGCTAGGGGTTCAGAGCTGGGGTAGGAACCCGCGTCTTGGAGCTAGGGTCAAACTGAGAACAGTTTTATCTCTCCCAGATGTGGCCTATTATTGAGACAAGAGGACGGGGGGGAGCGATGACCCCCAGCAGACGAGGTTGATGGAGCTGGAATGAGAGCGCTAGTCCCAGccaagaagagggagagagaaggaagaaaaaAGGCTCCAGaaatggggggaggaggagggggtcagACGAGAGCTGTTACGGTCTGAGCAGAGCATTTATTCCCATGTTTATCTCGGTGATCTTCATCAACATCAGACGTCAGCCTGGATATGAACAGTTAAAGGATATAATAGGGCCATTAACCACAACACTGATGTTGCTGCTGCGACTGCCTGCTGGCCTTGCACTCGGTTGGCCAAGGAGAACACTTCTGTACTGAGCCTGCACATATTCCCCCAACTAACTTCCCCTCACCCACGTCACTTTCACCAAGTACAGAGATCTGTCATATGTTTTTTTCCTGCTGTTTTTCTCACTTTGTGCTGATTAAGCAAAAGATCTCCTTAACCCCTATTCAtccatccacaaacacacacacacacaccctccaccatACATCCATCCTCAGCCACAGCCACACTCAGGGGGGTGAACAGCCTGTCTAAGTTTAGCTGAGAAGAGCCATATTGTGTGAATTTGGTCCTAACCACATTTTCCTGAAAGTGGTTAAGAGAAAGAGGTCATTGGTTTGGCAACGCTGCCACTTCTACTTTATGTACAGTACTACCAGTTTTTATGTCTTTACGTGTGTTTAACACATGAAATGAATCTGAATCTTGAATCATGAATCTTTCCTGTATATCTCCCCTCTATctagaccagtgtttcccaacttcggtcctcgagtacccccaacagcacacatttttattgttgtagccCCGGACAAAAACATCTGATTCATCTTGTCAAGGGCTttatgattagttgaatcaggtgtgcttgtcggGGCCACAACAAAAATATGTACTGTTGGTGGGGTCCTcaaggaccggagttgggaaacactggtctagACAGAGGAAAAGGGGGGACATGATTAGTCTTTTGAGAGGTTATGAGTGTACGGTATGTTAACATACATATTATTGTCCAGACACTTCTAGACAAGAGGTTATTTTAGCTCGTTGCTATGTTACGCCAAACAAAGCACatctatagctaggtttccatccaattggctacagattttcatgcaaatgttctgcataaagaaaatattcacattttcccaccagtggtgtgtttccaccaaactgattTGTTGCGGATAGAAATCAGTGCGTGACGATGTAGTGTACACAAAATGGTTTTTCCACTCTAccaatagttttgtcacaaaaaccgTAGTGTTAAATTGCAAATGTGCAACTCTGGTCTTGGTACATGTGCTCTAGTCAACAGCTCTCAGATACAGTGCTGGTAGGCTACTCTACATGATGAGATTCTAGATAATAGCgagaatattttttatttgtcaagcatcgatcatcatgtcaccagaataagagcctcaatatt
>TU2456438
tatgtaaaaaaaaataaaaagaataaAAAAAGGCAACTGTCTATTGTAGCTCTGAGATAAGCAAGGAATTATAACTTAAATAGATAAATACAGATGTCCATGCGAGACCCACCATGGGGGCTCTGACAGTGAAACCAGCTGCACTGATGTGAACCTAAGACACGGAAACCAGATACATCAAAGTCAAAATGGCTGTTTGACCTTAGACTCTCAGATTGTCCAGTAATGTGGTAATGGGAGAACGAGGCGCTATTCTATGTCTTTTGGTAGAACAGCAATGTAAAGACATGAAATCATGCTGTTGGGAGAGAAAAGAGACTCAGCACATGACAGGTTTGCCCATCATAGAGCTAGTCTTTGGCTAGCTCATTTattttaaacttttatttaactaggcaagtcagttaagaacaaattcgtatttacaatgacggcctaccccggccaaaccctcccctaacacagacgacgctgggccaattgtgcgccgccctataggactcctgatcacggccagttgtgatacagcccgggatcgaacccagatctgtagtgatgcagtgccttagactgctgcgccactcaatGAACCctgaaacatacacacaaactacagGGGAGCTTTGTTAGAGCCCCGTTCTTGTGCAGAGCCTCGTTCTGAATGTTAATGCACATCGCTTGTGGTAcggttttggaaacataaggatctttcatatcagtgagaaataattgtaaaaaaaacaaaaggtTAAATTACTACACACCTTTTATATGGTTAGGCTGAGTGTTCCCATGCACACACCCATATCTCCATGTTGCAGCGCTTGTTTGCGGAAGACAGATGGTGGACAGAGAcgaccacctgtgctaattagctatctagagTGTGTTCGAacacctgtgtgtatgtgtaactgGGGAGGAAGTGTAGTTTGAAGGCTGGAGGCACACAGACGTAAGGATCTGGGCAAACCTGTTTCAGtaagtatattttttatttgaaagaTTCATTcccgctgatatgaaagatacgtTTTCTATGTTTAAGAAACCGTATCGGAAGGTGATGATTATGGACTGTTCTGAATGTTAAAACAGCGTTGGAATTGTAGTTCACATGGTGCTACCGGTAACTAGTGTTTATAGCTGAGAACCCTTGAGATAAGGCAGAATGCCTTGTTAATGCCTTGGGTTCTCGAGAGCAAGTCTTTGGGCTGGTACATGAACATGAATGCACAAACCGTTGAGTAGGCCTATGTTCTGCTAACTTTCTTCCTCCTACCATATCCCTGGGCTGGGGCAATCATTCCAttcctattattattattgtgttgTGGATTCCGACTGTGGAGATGTCTGGTTGGTTTTCACCCAGTCATGTTCTGTGTCTAATTTTCCTGGCAGGAACCTGTAGGGAGGACAGAAAAGTGGAAAAATCAGTCCCACTGGGCACATgccaattcaatgtcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590563.2 False 1948 mRNA 0.48 6 8140782 8168089
TU2456440 False 2409 TUCP 0.48 5 8130783 8168031
TU2456438 True 1471 lncRNA 0.43 2 8133772 8135274

Neighbor

gene id symbol gene type direction distance location
LOC110509584 LOC106562949 coding downstream 166395 7963641 ~ 7974387 (-)
LOC110509585 LOC106562949 coding downstream 181682 7945686 ~ 7959100 (-)
gfm2 gfm2 coding downstream 212837 7915385 ~ 7927945 (-)
LOC110509579 enc1 coding downstream 238968 7889769 ~ 7901814 (-)
LOC110509578 LOC106569021 coding downstream 612574 7515012 ~ 7528208 (-)
LOC110509588 NA coding upstream 34454 8202543 ~ 8208651 (-)
LOC118945696 NA coding upstream 34830 8202919 ~ 8203048 (-)
LOC118945695 NA coding upstream 36882 8204971 ~ 8205102 (-)
LOC118945698 NA coding upstream 38254 8206343 ~ 8206474 (-)
LOC110509589 LOC106568849 coding upstream 41193 8209282 ~ 8216845 (-)
LOC110509586 LOC106562956 non-coding downstream 5508 8130783 ~ 8168089 (-)
G2148055 NA non-coding downstream 15130 8125066 ~ 8125652 (-)
G2147568 NA non-coding downstream 99746 8040655 ~ 8041036 (-)
G2147567 NA non-coding downstream 100402 8040170 ~ 8040380 (-)
G2147524 NA non-coding downstream 203211 7937372 ~ 7937571 (-)
G2148071 NA non-coding upstream 3596 8171685 ~ 8171902 (-)
G2148048 NA non-coding upstream 34680 8202769 ~ 8206564 (-)
G2148247 NA non-coding upstream 265457 8433546 ~ 8464718 (-)
G2148253 NA non-coding upstream 274943 8443032 ~ 8529631 (-)
G2146036 NA other downstream 1491119 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 1546308 6579264 ~ 6594474 (-)
G2145542 NA other downstream 1887916 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 1992288 6141066 ~ 6148494 (-)
G2145604 NA other downstream 2032030 6100771 ~ 6108752 (-)
ttc33 LOC106568686 other upstream 1197123 9365212 ~ 9437537 (-)
G2151189 NA other upstream 2549932 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 2783160 10923070 ~ 10969315 (-)
G2151771 NA other upstream 2825077 10993166 ~ 10993879 (-)
LOC100135966 rps27a other upstream 3073905 11241994 ~ 11244060 (-)
G2147523 NA non-coding downstream 198489 7935078 ~ 7935283 (-)

Expression


Co-expression Network