LOC110509588


Basic Information

Item Value
gene id LOC110509588
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8202543 ~ 8208651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040378.1
TACACCAGGTGGCATTTGGAACTCTGtccagtctttagaaagttgtgtAATTGGTCTGTGATGAGAAATCATGCACCACGCTGAACTTGTGATGGATAACCTCTACCACATTATCTGAGACCTGCACAGACATGGTTACAAATAAATACTGGTTCATAAGGCTGGGTTGTGAATGCTTGGTTCTGGTTTCCCTGACATGGATTAAGCCTACTTCTGGGCTAAAGCTATTTTTATGGCAAATCCATATAGGCCCCTACTAACAGTTTAATGGGCTTGTTTCTCAGAAGACCAGTTTTACCAATGGTCCTTCTTGGTGGTTCTTTCCCTTTGTGATGTAACGGTCTACAATGCCACTTACAATGAGCGGGCAGACAAACGAACCAATGATGGCACGGCTGCCCTATTCAGTGGGCATATAGAACCAGCCTGATATGCCCAGGTATCATATCCTGTCCTCTCGGTGAGGGGGATATGACCTATTAATCGAGCACATTTGATCTTGGTGTGACTGATGCTTTAGAACAGGTGTATTGAACACTTGCTATAGGACAGGGTTTCCCCAAAATGTCCGgttgaccccaaggggtgcacattttgggtTTTGTctaagcactacacagctgattttaaataatcaactaatcatcaagctttaatAATTTCAATCAGTTGTTGGTGCAAAAACCAAAACGATACCCTTCaaggtctggagcctgctggtgTTCTGCTCTACCTGATAATTGCACCCGCCTGGGGTCCCAGTGATTTAGAGGAAACCAActcagtggaactggctttgagATAAAGGTTGGTCTGGGGGTGCAGCACTGCTTGCTGACTTACTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGACTCGGGTGCCATTTGATTTTGTGTATGCAGCTGCCACTATTATAGCCATTAGATGCTGTTAAACTGAGCTCGCTGTGATTAAGTTTCTGGTTATCACACGGAAACCCTTCACTCGGTGACTTAGGTGAAATTGGCTCAACAAATAAATAAACGATGTACCTGCCCTGTTTGATTTGAATAAATGTATTGCTTTCAAGATAATTCAAATAAGCTCAAGCTGATCTGTG
>XR_005040375.1
TGACCTATTGGTGTCACTGTCCAAGCAGATGGCACATGAACGTAGCAGTAAGGCCTGCCTCTTCTCCCTGAAAGAATATGCTACACCAGAATAAAGGTTGGTCTGGGGGTGCAGCACTGCTTGCTGACTTACTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGACTCGGGTGCCATTTGATTTTGTGTATGCAGCTGCCACTATTATAGCCATTAGATGCTGTTAAACTGAGCTCGCTGTGATTAAGTTTCTGGTTATCACACGGAAACCCTTCACTCGGTGACTTAGGTGAAATTGGCTCAACAAATAAATAAACGATGTACCTGCCCTGTTTGATTTGAATAAATGTATTGCTTTCAAGATAATTCAAATAAGCTCAAGCTGATCTGTG
>XR_005040377.1
TGACCTATTGGTGTCACTGTCCAAGCAGATGGCACATGAACGTAGCAATAAAGGTTGGTCTGGGGGTGCAGCACTGCTTGCTGACTTACTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGACTCGGGTGCCATTTGATTTTGTGTATGCAGCTGCCACTATTATAGCCATTAGATGCTGTTAAACTGAGCTCGCTGTGATTAAGTTTCTGGTTATCACACGGAAACCCTTCACTCGGTGACTTAGGTGAAATTGGCTCAACAAATAAATAAACGATGTACCTGCCCTGTTTGATTTGAATAAATGTATTGCTTTCAAGATAATTCAAATAAGCTCAAGCTGATCTGTG
>XR_005040376.1
agcagggtttcccaaagtcGGTCCAGGGGCTCCCCTCCCCTgtgtgcacgttttgttttttgcccaagCACTGCAAAGCGGATTCAAACAATCAAAGATTGATGCGTTGGTaaattgaatcagctgtgtagtgctagggaaaaACACCAAACATTCACCTGGGGGCCCAGGACCGACTATGGGAAACGTTGGGCTAGAGTGCACATGACAAGGCCAGAGTAGGCATATTTGCTATTTAATTAATGCAACAGTTTTAGTGAAAAAactatcggtagagttgaaaatgcgatggaaacataTTGAACTATAAGCTTTTTTTTAGCTCACTGATTTTGATCCGCAAAAAGTACATTTGGTTGAAACCCCACTGGTGTGGAAAGGCGCATATTTACTTTTTGCTTATTCTGCAGTTTTCACTTAAATCTGCCGCCAATTGGACGGAAACCTAGCTAGTCGACCTGTATGCGATTGAATGAAACCACTCGAATGCATATTTTGCTTGCCTTAAATTGTCCTTCAAAGATTCCGTAGGTGATCCTTATAAATAGACACCACCCCGTTTTTCGTTCTCTTGTTCTCACTCAGAAGTCTGAGCATGATAAAGGTTGGTCTGGGGGTGCAGCACTGCTTGCTGACTTACTGGTTAGTGGGTCATGTGACGCCACAAGCCACGGATGTGAAGCTGCCAATGCGAAACTGGTATACCGCTGGTTGGTGTCCTAGCGGCTGTGACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCAGTGTGCACATAACAGCGATAAAggatggtctgggggtgcagcAGTGCTGACCTACTGGTTATAGTGGGGGGCGCCACAAGCCACGATGTGAAGCTGCCAATGAGAAATTGGTATATTGGTGTCCTAGCAGATGTAACCTGGAAGTAGCAGAATGATTGCCGCCTTTCCTCCCTGAAAGAATGCTGTGCACAGAACGAGTCTGGCAGTGTGGGGTTGACATGGAGCCACAGGTCATTATGGGACAGGTGCTGAAGAATGACTGAAGATGAAAGGTGGCAGTACCTTAGAAGAAAGCAGATTGTTCAGTTGCTGGTCCAAGACTCGGGTGCCATTTGATTTTGTGTATGCAGCTGCCACTATTATAGCCATTAGATGCTGTTAAACTGAGCTCGCTGTGATTAAGTTTCTGGTTATCACACGGAAACCCTTCACTCGGTGACTTAGGTGAAATTGGCTCAACAAATAAATAAACGATGTACCTGCCCTGTTTGATTTGAATAAATGTATTGCTTTCAAGATAATTCAAATAAGCTCAAGCTGATCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040378.1 False 1535 mRNA 0.46 7 8202543 8207538
XR_005040375.1 False 824 mRNA 0.48 7 8202543 8207634
XR_005040377.1 False 781 mRNA 0.48 7 8202543 8207634
XR_005040376.1 True 1332 mRNA 0.45 7 8202543 8208651

Neighbor

gene id symbol gene type direction distance location
LOC110509586 LOC106562956 coding downstream 34454 8130783 ~ 8168089 (-)
LOC110509584 LOC106562949 coding downstream 228156 7963641 ~ 7974387 (-)
LOC110509585 LOC106562949 coding downstream 243443 7945686 ~ 7959100 (-)
gfm2 gfm2 coding downstream 274598 7915385 ~ 7927945 (-)
LOC110509579 enc1 coding downstream 300729 7889769 ~ 7901814 (-)
LOC110509589 LOC106568849 coding upstream 631 8209282 ~ 8216845 (-)
LOC110509590 LOC106562960 coding upstream 15727 8224378 ~ 8232643 (-)
LOC110509591 LOC106562961 coding upstream 409391 8618042 ~ 8682244 (-)
LOC110509310 LOC106562962 coding upstream 552452 8761103 ~ 8889487 (-)
LOC118945710 NA coding upstream 815144 9023795 ~ 9023922 (-)
G2148071 NA non-coding downstream 30641 8171685 ~ 8171902 (-)
G2148055 NA non-coding downstream 76891 8125066 ~ 8125652 (-)
G2147568 NA non-coding downstream 161507 8040655 ~ 8041036 (-)
G2147567 NA non-coding downstream 162163 8040170 ~ 8040380 (-)
G2148247 NA non-coding upstream 224895 8433546 ~ 8464718 (-)
G2148253 NA non-coding upstream 234381 8443032 ~ 8529631 (-)
G2148352 NA non-coding upstream 375906 8584557 ~ 8584921 (-)
G2148371 NA non-coding upstream 403356 8612007 ~ 8612250 (-)
G2146036 NA other downstream 1552880 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 1608069 6579264 ~ 6594474 (-)
G2145542 NA other downstream 1949677 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 2054049 6141066 ~ 6148494 (-)
ttc33 LOC106568686 other upstream 1156561 9365212 ~ 9437537 (-)
G2151189 NA other upstream 2509370 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 2742598 10923070 ~ 10969315 (-)
G2151771 NA other upstream 2784515 10993166 ~ 10993879 (-)
LOC100135966 rps27a other upstream 3033343 11241994 ~ 11244060 (-)

Expression


Co-expression Network