LOC110509590 (LOC106562960)


Basic Information

Item Value
gene id LOC110509590
gene name LOC106562960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 8224378 ~ 8232643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590572.2
AAATAAAAAGCTGACCGAGGTGGAGAGGAAGGGGTGCTAGAGACCGTGCACTGTTTGCTTGTGTCAGTTCTGTGTGTGAATACTGCTGAAATCTATAGAATTAGCTAATAGCTACTAGGAAAACCAGCGAAACTGGTGGACATTTAAAGCGTACGAGCGATTCAACCATAACCAGaTGTAAAAATGTGAGTATTGTCAGAGGCAGATGTGCTCCCATGCTCCCACCCACCCCAGCACCACACTAGAATGTACTTGATGAACGTGCCTCCAGTTGCGGCTATTCACACAGAATGGAAGTCATCATGCGGCGGTCCACCCGGAGGCTTTAGCGGTCTGCCCATCTGCTTCAATGACTCTGACAGCGACTTGTCCACCACTGGAACACCCATCCCAGAGAAGGTCCAGATGATCATAGAGAGCCTAAGGAGCACCCATTCCTCACTCGACATGGGCAATGAGACGGAGGGGAACCAGGTGCTGTCAGGACAACCAGGACAGGATGTCGGAGCCCGCGGCTCCCAGGGCCAGGGCTTCAAGGCCCGGAGGGGGCTTCCTGTGGTGGTGGGGCCCAAATTCAGAGGACTTCTTCCTGCCACTGACATTAATAACTTGCTGGCAGTGCCAGAAGTTTCCTCAAATGTTGATTCGGAGAGTCAGAGTTCTGACAGCGATGACTCTGTGGATAGAGGGATCGAGGAGGCCATACAGGAGTACCTGAAGGAAAAGGACGACCACAAACGCAAGGCCGAGCCAGAGCCATCCACTAATATTCTACAGCCACCCAAGATGCCGCGGAGGGAGCCTCCTCCAACCGTTCCAGAACCTCCCAAACCACAATCTGACAGCAATAAGGTTTTAACTGCCAGCAACCAGGTCCCAAAAAGTGTCAAAACAGAAACGCAGGACACCACACCCCCAGCCATGAAAAAACGTGTAAAAAGTAAGACACCCACCTGCAAAGAGAATCCCTTTAAGAAATTGGGCACAACAAGCAAAGCAGCGGTGGTCCAAAAACTGTCTTCTTTCGAACGGAAGAGAGGCCCCTCTATTTCGAACCCTCTTTCTGGCAAACTGAAGTGTCCCTTGGTGAAAGCAGTGGAGGAACACTTGTCTGACAGTGACAGCAGTAGTGATGACGGTATAGAGGAGGCTATTCAACGCTACCAgcaggagaagaaaagagagagacatgaaggAGGAGGCAGACAGTCCTCCAAGCCCCTTCTTCTCCTCAAAGAGGAGTCCGACTCCAGCAGCAGCGATGACGGAATTGAGGAGGCTATCCGCCACTACCAGCTGGAGAagcagaaagagaaaaagagtcTCCCcaaactctctctatctctaccccctaAACATAAGCAAGTCAGTAAAGCAGCCGCTTCCCTGTACTGTCCAGAGAGCATCAGCTCTCCAGCAGGGGCCATGAAAAAACACAAACTGTCTaaaaataaaaagaagaaacCTGAGACTAGGGATGTAAAATCCTATCTACCCTCCCAAACTCCAGGTTCCTCACTATCTCTTATCAAGACAAGATTAGCAGCTAGCTGTCCCCAGGGGAACGGCCTCCTCCTGTTGACTCATGTGGAGCCCCTgcgagagagggagcaggagcaGCACACCACCCCAGGCCCAGCCACCCTGAAGGTGaacaccatcactaccaccacagCTGAGCTGATGTGTGCTGAAGCCATTCTGGATATCTCTAAAGCTGTCATTAAAATTCCAGAGGCCTTTAACCCTAACGCAGCGGACCTTATCAATATCAACAGCAGTTCCACAGAGTCCACCACTTCCCTCCTCATCTCCACAAACTGTcctgatgatgataataataaaagTGATGATGAGAGCTCCGTTGACAGTGAGGAGGGGATCGAACAGGAAATCCGGAAGTTTCTCGAGCAGAAGGCCCAAATGCACAAACTGTTGCCTGGTTCAGCTGTTGGTACTACAAGTCAGGGTGGAACTAACACTACGACTGAACCAGAGAAAAACACCAAACTGAGTCTGGCCCAGAAGAAAACACTGAGGCTGTCTTTGACGCAGAGAAGAAAGAGCAAAGAGGAAGGCGGCAGCAGGAACGGTTCCAAGGAGGAACGAGAGACTGATCTCGGAATGAAAGAAGAGGCCGTCACAAAACCCTTGACTGAGCATGACAGAGGGTCAGGCTCATCCTTGTCGTCCCTGAAGAAAGCCCCAGTGAAATCAGTGAAGGgctcagagaggaggagggaacagAGTGGAGAGAAGAGTAGCTCACTGGACAGTGACGAAGACCTGGACACTGCAATAAAAGATTTGCTCAAGACCAAGAAGAAGTTGAAAAAGAAGACTAGAGATATGAAGTTGAAGTCAAGGAAGGGCCTCAAGGATGATGAGTATTTGTCTAGAAAAACAGCATCACCGCTAAAGAAGCTCAGAACGGAGTCTGAGCCCAAGACCAGCAGTCTTTTGAAAACGACCCTTAaagtcactactactactacagcccaAAGTGGCAACGACAACAGAGAGAAGTGCAAAGTGAGTAAGAATGTGTCAAAGCATCCACAGAGCAATAAGAAGAAAGAGCCCCTTAACCAGGCATATGAGACAGACCGGTCTGAAgggacaaaatgtgtagaatgctTGTCGGGAGTTAATGACTCAGGGGTGTTTCAGATAAAGGAAGATAGTAGTTCAGTGGACAGCGACGACAGCATTGAACAGGAGATCAGAAAGTTCCTGGCGGAAAAGGCTAAAGTTTCTACTACCGCAGGGACCACGGGAGATGGAAAGGAGATTGGGAACGGCAAGGGCAAAACTACAATCCCTCTCACAGAGAAAAGCATCAAAACGGAAAACCAGCTGGCTGATATTCCAAGAATGGATGTTACCCAATTCCCTGACCCGCCTCGTCAGAGCAGTTCTGAGCAGAGAGGAGTTCTGGACAGAGGAGTCTTTCCCAACACACCCCCAGGAAACCCCACCTCCGTCCTAGGAACAGCCAGGGGATCGTGCCTCCTTTCAGCCCTCACCCCCAGCTCCTATCCTACAGCCCTGGAGCCTGCTGATGGCGCTGGGGCTGCCAGAGCTGACAAGAGGAGTTTGGGTTCAGGAAGCGGTAATGCCCACCAGTATGCCAGCTCAGAGATGGCAAGGGGTCACAGCCACAGGTCATCTCCAAGCCCCAGCACCCACTTGCCCAGGACTGACTCAGAGCAGTGGCTTAAGAGCCAAGCGTTCCCCCCCACTGAGACAAAAGAGAAGATCCATAACCGGAACCCATTCCAGTACAGCTCACCTAGTTTTGGTGAGAAGACAGCCACCACGCATGCGTATCAGTGTGGAGTACCAGCCAGTATCTATCAACATAGAAGGAGAGCTGAGCCTGCACCTGCATTGGACACACCTGTCTCCACCTGTCCTGATGTTGTACGGATTGGGAGGATCATCAAATCACCACTGGTTCCTTTCCACTGCCCCTCATCCTCAGAGACAGCCGTCTTCAGCTCTCCATTCCCAAGCCTAACCAGGAGACCTGTGGAGACGGGGCCGTCTGGGAGGTACTTCCTCCAGGGTCATGGGTCAGGGCCGGGCAGCCGCTGGGGTCAACCTCCAACCCTGACCCCAGGGCCGTCGGAGAGCAGCGTGGTACACGTGGCCAAGAACCAGACCACGTTTGTCGAACTGTCTGAGAACGAGACCAATCATGTACAAGTCAGGAGCAGGGAGGTGACAGTGATTGAGGGAAAGAAGGAAAGGAGAAGTGACTTGCCAGCAGGAGAGAAGGAAAAAGAAAGGGAGGGCAGAAagccagaggagagaggaggagagcagatagaaagacaaggagaggaggagtgtgtagATGAGACAGATGTCAGCGAGTCAGACGAGAGGACGAGCCCAGAGAAGAAGCAGGGCTTTCCTACTTTGTAAGTTCAGGCTTTTTCCTTAACTTCACATAGTAGCATCACATAgcctttttttgtctttttttttaaccTATTGCGTGTGCCCTCCTTCCTAGTGGAAATCATGTGCATTCGTTCATTTGACGGTTCCAAGGGATAGTTTGTTTGTTGATACACAAAATGAGCATAGTGCAAAGCTTATTTTTATATGTTTGTACATTTTATACATCTATTTAAAATACTATAACACAATGTCATCAAGGATTTAAGACAaacctaccttttttttttttcatttgttCTGTGAGATTCCATTTTCTGTTACGTTCTTATCATTCAAGCTCTTAAAAGCAATATCAATCACCACCCTGAAACAACGAGCCCCGTGCATGAAGGCTCATACCACCAATGCACAGCACTCCACTGGATGTCTGATTTCTGATTGTCACCACCCCTAATATGCTGAGCTTCTCAGTCCGtttttcttcacctcacacagtaagtcaacgaagtcagttaaaaaaaaaatccattgtgAATGATATTGCCTCACAGTTGTGTGTGTCTGGTCATTTAATACAGGAACTGGTTATTTTTGTCTCCcttgacatttaaaaaaactttCAAACCCTATCAAATATATAGACCTAACCACTAAAATACTACACTAGTACTATAAAATGTTAGGTCAAATACAGAATTATAAAGACAACAGGGAGCAAGTGAGGTAGAAGTGTTTTGTAGCTCCATGGATGAATGGCTTACTTCATACTCTGCATTCAACTAGCCTAATAttcccgtgtgtgtgtctgtgttccctTTCCCTCTTTGTAATGTTTTAATAGACTAAAATCTTCCCTGTGCATTCTAACAGTCTTCCCCATTTTAATGACACAAACGCACGGAAACAAAAAGTATCATTCTCATAACAAGCCCTTACCATAAGCTACGTTTCTGTTCTGAAGGATCCTGTCAGCAGCGGTTAAATTGGCAAAAGCGATATTTGCTCTGTTTTGTGTCTGAAAATATACAAATGCTTTCTGAATTTGTGGCCTATCATGAAGAGATTGTAAAGAGGACAATCATAGGCACATTGCCCATATCAATGGTTCATCTCCCGCTCACAAGCTGTCAACAGCACACACAAACTCATCGGGCTCTTCGGATTTCTCCACTTGCCATTTGGTgtggtttttctttctttcttttctttctttgtttGCTTGTTTTATGTTCCAGTAGTTTTCTTGAATTTTCATATGTGAAAagaatgttatttatttttgtttatggGGAAAAAAGGAGGAAAAAATACTTACTGAACATGCTGTGCATCGCCAGTTTTCATAAATATTTTGCAAAAATTGAACTTTCACCGGTTTTCCCTGTCAGAAGGATACTTTGACTGTATCTTTAAAGTGCAACTGTATAATAAAGAGTGAATTTCAACAACA

Function

NR:

description
protein phosphatase 1 regulatory subunit 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590572.2 True 5359 mRNA 0.47 2 8224378 8232643

Neighbor

gene id symbol gene type direction distance location
LOC110509589 LOC106568849 coding downstream 7533 8209282 ~ 8216845 (-)
LOC110509588 NA coding downstream 15727 8202543 ~ 8208651 (-)
LOC118945698 NA coding downstream 17904 8206343 ~ 8206474 (-)
LOC118945695 NA coding downstream 19276 8204971 ~ 8205102 (-)
LOC118945696 NA coding downstream 21330 8202919 ~ 8203048 (-)
LOC110509591 LOC106562961 coding upstream 385399 8618042 ~ 8682244 (-)
LOC110509310 LOC106562962 coding upstream 528460 8761103 ~ 8889487 (-)
LOC118945710 NA coding upstream 791152 9023795 ~ 9023922 (-)
LOC110509593 LOC106562963 coding upstream 795503 9028146 ~ 9130315 (-)
LOC110509595 LOC106562965 coding upstream 909346 9141989 ~ 9150865 (-)
G2148048 NA non-coding downstream 17814 8202769 ~ 8206564 (-)
G2148071 NA non-coding downstream 52476 8171685 ~ 8171902 (-)
LOC110509586 LOC106562956 non-coding downstream 89104 8130783 ~ 8168089 (-)
G2148055 NA non-coding downstream 98726 8125066 ~ 8125652 (-)
G2148247 NA non-coding upstream 200903 8433546 ~ 8464718 (-)
G2148253 NA non-coding upstream 210389 8443032 ~ 8529631 (-)
G2148352 NA non-coding upstream 351914 8584557 ~ 8584921 (-)
G2148371 NA non-coding upstream 379364 8612007 ~ 8612250 (-)
G2148626 NA non-coding upstream 633507 8866150 ~ 8867572 (-)
G2146036 NA other downstream 1574715 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 1629904 6579264 ~ 6594474 (-)
G2145542 NA other downstream 1971512 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 2075884 6141066 ~ 6148494 (-)
ttc33 LOC106568686 other upstream 1132569 9365212 ~ 9437537 (-)
G2151189 NA other upstream 2485378 10718021 ~ 10799318 (-)
ttll11 LOC106562979 other upstream 2718606 10923070 ~ 10969315 (-)
G2151771 NA other upstream 2760523 10993166 ~ 10993879 (-)
LOC100135966 rps27a other upstream 3009351 11241994 ~ 11244060 (-)

Expression


Co-expression Network