LOC110509594 (rexo4)


Basic Information

Item Value
gene id LOC110509594
gene name rexo4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 9137291 ~ 9141371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590578.2
gttacccatcgctccacaaaagccgcggcccttgcagagcaaggcgcacactgctaactaaactagccgtttcacatccgttacaccatgtacagagaggctagagaggctcACAGATATAGGATCAGTCATGATGTATCGTATGCAGAGGCCGTCAAACAGTTTTGTAGAACTACAGTGCGGACTGATGGAgcttacatggatgtacctggaGTAAGTGGACCTAATGTCAGGGCTGGTGCTTCTGATGGTCCTGGCATGGTTTTGAGGCCTGTTCAGAAATCTTGTGCTCATGAATGTGCTGTGTCAAATGACACTTTGATAATTGAATGAAATTGTCTTCATAGATTGTATTGGTAAGGTTATCAATACGACTCGGGATGTGGAAAGCAGAAATGCCAGGTAGAAGGTTATTGCGGAGACCGCAAAAGAGATATTGGGGGTAACAGATTGAAATGGTTGTTGACATGCAGAACAATCCTAAGGGTGgagtgtttcagcatgatatagATCAAGTTTAATGTGTTTGGGGAGGGTGTGGTAGAAGTCAGGgatttatttgttgtttttttttaaatcatggtAGTGCTGAATTAAGCAGATCGTGATTGATCGTACATTCCAGCACAGCATGCGGCATGCGATTGTTTGCGGACCGCCATTATAGCATAGAAGAAACGAAGAAAGAAAATGTTTCTAGGAACCAAGACCAACCCTCGTTTCCTGTCGGACATTCACATTTGTGACACATTGCAGAAGTACACATTTCAGCACGACGTACGGAAAAACGTGTAGATATCTGTTTGTAAAGCATAACGAGTATGGCGAGTTTGTAAGTATTCATTAAGGTATTTGTAGAGGTGAACTATTGCGGTTCAAACCGTCAAATCATTGCTTTAGCAAATGTAATTAGCCAGCTAATTCACTAACTAATGCTTGATCTCCTGATCACATGTTAGCAaaactagctagcaagctaacgtcATCCAAGAAGCCAATTTACTGAGCAACAGGACGTTTGAAGTATAGTCGGCTGTCACATATTAAGTCAAACGCTAGTCGCTTAGCAATGTTTACTTTTTAGAATGAGACGTGAAGACCTAAAGTTATAATGAAAGTTCAGGCTGCCATTACACTGCAACGTGTCTTtagcagctaacgttagcttgcctAACTCAAAAAAATAATTCGAAGAGGAGAATTGACAGACATATTTTCGAAATCAAAGCTCATAGTCCTCGAGATATGTCTAAAGTCAAGCCAGAGAAAACGGACTCTGCTGCTTCTTCTAAAACGCCAGAACCCAGCCAGGACCAAAAGAAAAAGAAACCTGTAAAGAAAAAGTTTTTTGAACACACCAAGAAACAACCAGTGGCTAAAGATCACGGTAAAACCAATGCATTGCTTCCCCCGAAAGATGCCGAACAGTTTTCAGCCAACTGGAAAACGTTACTAGAGGTGTTCAAATCCAATCCCCTGCCAGTAAAAAATAAACCAGTTCAGCAGAACTCAAAGAAGGAAGTCCCTAAGAAACCCACTAAATACATTTCAAAGAAGGACGAGGTGGTGGAGGATAAGAAGCCTGCTAAAGACTTATCAAAGACAGTGAATGATGCAAAGCCCATGCAGGTGTACAGCAGGAAAGTAGGGAAGGACAGTGCCGTTCCCAATAAATCCCAGGTGAATGGGAAAGGTCCAGGAACATCGGGGACAGAACAGCCTAACGCCAAGAAGAAGAAACCGAACAACGCCCAGGTGGAGGGTAACACacagatgaagaagaagaaaatagagGAAGTGGAGGAAAAGAAACCCACTGAATCGGACATGTGGTTTGATGGCGTGGACCCTGACGACATTGAGGCCACAGTGGGGACAGAGGCAGCGGATATCATGAGGAAGATGCAAGGCATTCGGAAGACAGATGCCCAGACCACAGAGAAGGCGCTGGTCAAGGACAGGGGGTTCGAGGGCCTTACTAAGGCGGTAGCTATGGACTGTGAGATGGTGGGTGTGGGGCCAGATGGAGAGGACAGCATTGTAGCCCGGGTCTCCCTTGTCAACCAGTTTGGGAAGTGCATCTACGACAAACACGTCAAGCCCACCGAGAAGGTGACAGACTACAGGACAGCTGTTAGCGGCATCCGGCCGGAGAACATCAAAAACGGTGAGAATGTAAAGACTGTACAGACAGAGGTGGCTGAGATCCTCCAGGGGAGAACGCTAGTGGGACACGCCATTCACAATGACCTTAAGATTTTGCTCTTGGATCACCCAAAAAAGAGAATCAGAGACACACAGAAGTATAAACCTTTCAAGAAAATTGTGAAGAGTGGTCGGCCCTCTCTGAAACTCCTGTGTAGAGAAATACTTAACGTCAAAGTACAGCAGGGAGAACATTCATCCGTCCAAGACGCCCAGGCGACTATGAGATTGTACACGATGGCGAAGAAGAATTGGGAAGCAGAGATCAAGGCTAGTCATAACAACCCAGACTTAACCAAGAAGACCAAAGAACCAAGGAAGCCCAAATTAGCAAAAGTCAAATGAACCTGACTGGTTCTGAAGTCTTAACTGCATCATTCTGTTATGGGACTGTGGACTAACCAGGTGGCTTGACTGAATTAATAACAAGTGTGTCTTTGGGAAGTGGATCGTTTGGTGACCCATAAGGATTGCACAAAGAAGTTTGTTCAAATGGATATTGACTTTATTCAAATCCCACACAGCCCAAATCACTCAAATATCCTAGTGCTCCTTCAGCTATGCATCGATCTTTCATTCATTGTCTGGTACATCCTCTTAAGTGTTCAGATCGGGGTTTTAAAATGTAATCTCTTTATCTTCTAACGTCCACAGGTTAGGTTTAGAGAAGCTGTTGCATTTGTGGGCTTTAACATTAAACGTTTGATATCTTTAATCACA

Function

symbol description
rexo4 Predicted to enable exonuclease activity. Predicted to be involved in DNA catabolic process, endonucleolytic and DNA catabolic process, exonucleolytic. Predicted to act upstream of or within rRNA processing. Predicted to be active in nucleus. Orthologous to human REXO4 (REX4 homolog, 3'-5' exonuclease).

NR:

description
RNA exonuclease 4-like

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18327 REXO4, REX4; RNA exonuclease 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590578.2 True 2925 mRNA 0.44 8 9137291 9141371

Neighbor

gene id symbol gene type direction distance location
LOC118945282 NA coding upstream 107454 8957803 ~ 9032295 (+)
LOC110509587 fa69b coding upstream 935931 8173842 ~ 8201360 (+)
LOC110509309 LOC106562955 coding upstream 1001978 8102932 ~ 8135313 (+)
LOC118945305 NA coding upstream 1103369 8028448 ~ 8033922 (+)
LOC118945360 NA coding upstream 1116710 8018456 ~ 8020581 (+)
LOC118945275 LOC107691784 coding downstream 67987 9209358 ~ 9209829 (+)
LOC110509598 pe2r4 coding downstream 219587 9309984 ~ 9366518 (+)
LOC110509604 LOC106562973 coding downstream 922796 10064167 ~ 10309768 (+)
zgc:63972 LOC106562974 coding downstream 1332061 10473432 ~ 10496533 (+)
si:dkeyp-72a4.1 LOC106562976 coding downstream 1464784 10606155 ~ 10618148 (+)
G2148551 NA non-coding upstream 262802 8874049 ~ 8874489 (+)
G2148525 LOC106562962 non-coding upstream 300172 8835107 ~ 8837119 (+)
G2148509 LOC106562962 non-coding upstream 322909 8812585 ~ 8814382 (+)
G2147934 NA non-coding upstream 500613 8634772 ~ 8636678 (+)
G2147939 NA non-coding upstream 520064 8616631 ~ 8617227 (+)
G2148834 NA non-coding downstream 9819 9151190 ~ 9151587 (+)
G2148841 NA non-coding downstream 16676 9158047 ~ 9158274 (+)
G2148844 NA non-coding downstream 20339 9161710 ~ 9162003 (+)
G2148845 NA non-coding downstream 20900 9162271 ~ 9163006 (+)
G2148851 NA non-coding downstream 29103 9170474 ~ 9170787 (+)
G2146821 NA other upstream 1136801 8000129 ~ 8000490 (+)
LOC110509307 LOC106562924 other upstream 2478767 6640782 ~ 6664348 (+)
G2145733 NA other upstream 2618151 6518690 ~ 6519140 (+)
LOC118945315 LOC106593246 other upstream 2863798 6267751 ~ 6274178 (+)
G2149183 NA other downstream 232629 9374000 ~ 9374512 (+)
G2150729 NA other downstream 1320382 10461753 ~ 10462220 (+)
G2151555 NA other downstream 2219014 11359557 ~ 11432252 (+)
G2152150 NA other downstream 2622853 11764224 ~ 11766351 (+)

Expression


Co-expression Network