LOC110509598 (pe2r4)


Basic Information

Item Value
gene id LOC110509598
gene name pe2r4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 9309984 ~ 9366518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590584.2
TCCAAAAGTGCGGAGCCTCTGCTTCAAACTTACAAGTGAAGGGAGCGACGACAGAGGAGGAGTTGAACATGTTGAACACTGCAGCGCGGTGTGCAGAACGCCTGAGACAAAAACACTTCTGATAGTAAAAAACCTAAAGTTAGCGACTAACAGAAGAGACGAAGGTTACACGGAGACACGGAGACATTCGTTAGAGTGGTTATTCAAGTGCGTAACGGTTAGATAAGATGATGGAACTTGGGTGGATTTGGACGTTATTGAGCAACTTGGAGAGCACGCACCAACGAAAGAGTAACTATATCGTCTACATGCCAACGGTTTGGGAGATAACACTGAAGAAGAACTAACTATTTCGTTCCACATAGACAGTTACAGAATAATGTCGGGTATGAATAACGGCACGATGACAAGTGGGCCCCGGGAGCCTACTATCCCGGTGATTATGTTTATATTCGGAGTGGTGGGGAACGTCATCGCCATCGTGGTGCTCCGAAAGTCTCGGAAGGAACAGAAGGAAACCACCTTTTACACCCTGGTGTGCGGGCTTGCAGTGACCGACCTTTTGGGCACGCTACTGGCCAGCCCCGTCACCATCGCCACCTATGTGCAAGGGAAGTGGCCGGGTGGAGAGTCTCTGTGTCAGTACTCCGGCTtcatccttctcttcttctttctagTCGGCCTCAGCATTATCTGTGCCATGTCAATAGAGAGATACTTGGCTATAAACCATGCGTATTTCTACAACCATTGCGTGGACCAAAGACTTGCGGCGTTGACGCTTGCGGGCATCTACATTTCTAACGTGCTGTTCTGCGCGCTGCCTGCCATGGGGCTGGGGAAAGTGAATAAACAGTTCCCAGGGACCTGGTGCTTCATCGACTGGCGGACTAATGACTCCACGCACGCCGCCTTCTCCTACATGTACGCCGGGGTGAGCTCCTTTCTTATCCTGGCCACGGTGATATGCAACGTGCTGGTATGTGGGGCGCTGATTATGATGCACAAGCGGTTCATCCGCAGAACATCGCTGGGTACGGACCAGGGAGGACGCATAGCGGACCTGAGGCGCAGACGGAGCTTCCAACGATTGGCCGGCGCAGAGATCCAGATGGTCATTCTGCTCATCGCTACCTCCGTGGTTGTTCTCATCTGCTCCATACCTTTGGTGcTGCGGATTTTTGTAAACCAGCTGTCCAGGATTGAATTTGACGCCCATTCAACTCCCATAGAGAAGAACCCAGATCTCCACGCCATCCGAATTGCCTCCGTCAACCCCATCCTCGACCCCTGGATCTACATCCTGCTGAGGAAGACCGTCCTACTGAAACTGGTGGAGAAGATCAAGTGTTTGTTCTGTCGCTTGGGCAGCCAGGGGCGGGGCTCAGGGGTCAGTGGTCAATTCTGCTGCGGAGGTGAAGGTCATCGGAATTCGTCCATCGTCTCCCTGGACTCCCCGTCACTGGTGTCCCGCGAGTTGAAGGACGTCATCAGCACCTCGCAGACGTTTCTTTACCTTCCAGAGGGGACTaaaggggggttgggggggtttagagggacagagggagagggaagaccTAGCCTCCCTGCTGTGGAGCACTCCCTGCTCCGGGACCAACAGACACCAGCGGGTAAGGGGATGCAAAACGATCCCAAAAAGGGCCCCAGGATATCAATGAGGTCAGAGGGGACAGTTGACCCTTCACGTCTGAACAGGGTGCAATTGGACCGAAAGGACAAGACTCTGCATGTGACATTTACAGACGAGACACTGAACTTACAGGAGAAATGCATCTGATGGACACAAACACAAACTCAGCCAGAGTGGCTGATAATACAGAAAAGTCACAGAGGGAAGGGAATTTAGGACTTCTAATAGCCTAAAAGGTTGAGACTTCTGACAGGTTGAACTGAAATACACGTTGATAAACTGAACTCACAGGTGAAGGATTTCTGGGAGCTGTGCAAACACACGGTTGGTTTTACTGACAGCTGACACGATAAGAGGATAAATAGTAATCGTTCTATAGTGATTGTGTTATTCTTCGAATTTTGAGTTCATTGGTGATGCTCCAAAATGGAATGTCAGCCGAGCAGAAACATGATGTCCTGTTTAGGGTTTGGACAAAATGGAAACACGGTGCCAAAGTGGATTGTAGGAGATTGGATCTATTGACATGGGTGGATCTATTGTATATGTCACAGTCTTATTACACGAATACCAATATAATATACCAGCACACACATCAGTAATGAACATAAAATGTCATATGAACTTTTATAAAGACTATGAGGAGATTTCATTGCACTTTTCAAGAACTCAAAACCATTGAAAGGCTGTCAGAATGCTATCAGTATAGAATGTTGCTTACCACTGACTACTACTACAAACGTTGTGATATACTGTAAATAGTTATTAGGCTACAATGTGAACTGTGTCCCATAACATGAATTAATTTTTTaatgaaaaaataaatgtttcttcTCTGTGA
>TU2457665
atatttttccgtcattgtcttttgatgaacgaaaacatgttctatcatagttgCTCAAAATGGATCAGAAactactactctgctttgctctttgcaattttgtttttttgttcttcctcctccttgtacccctatttttacagtactgtaccctgcatctcacaaacttgtcctttgtctctgtgatactgtaattcttgttctttgttgatatgaacctgcaaccagtcaaaatctattgagcagtcagtactgttaataaatggaaagcacaatgttcagggccatacaatgtgtccattgtacagtatacagcctacaatgcactgtactacagtatacaatactaaaagggacaaaaatcaaaggagtaaacatgtgatcaatgtgcttcttcttgtctttgggCTGGGTCAGGCCAGAGCACTTCGTCGACATCACAAGCAACATTGTCCCTCCTGAGGCAACGGGGTGTGCCGTATCCAGCCCTGACATGATTCCTCACCTATATCACCACAGGCTAAATCCATGGCTTGCAGCAGACTTACTCTGGTGTAGGGTTgtctatcatacactttccatATCCAAGAGGAGAAAAAGTCCTCAATTGGATTCAGGAAAGgcgaggatggagggagggaagaccTAGCCTCCCTGCTGTGGAGCACTCCCTGCTCCGGGACCAACAGACACCAGCGGGTAAGGGGATGCAAAACGATCCCAAAAAGGGCCCCAGGATATCAATGAGGTCAGAGGGGACAGTTGACCCTTCACGTCTGAACAGGGTGCAATTGGACCGAAAGGACAAGACTCTGCATGTGACATTTACAGACGAGACACTGAACTTACAGGAGAAATGCATCTGATGGACACAAACACAAACTCAGCCAGAGTGGCTGATAATACAGAAAAGTCACAGAGGGAAGGGAATTTAGGACTTCTAATAGCCTAAAAGGTTGAGACTTCTGACAGGTTGAACTGAAATACACGTTGATAAACTGAACTCACAGGTGAAGGATTTCTGGGAGCTGTGCAAACACACGGTTGGTTTTACTGACAGCTGACACGATAAGAGGATAAATAGTAATCGTTCTATAGTGATTGTGTTATTCTTCGAATTTTGAGTTCATTGGTGATGCTCCAAAATGGAATGTCAGCCGAGCAGAAACATGATGTCCTGTTTAGGGTTTGGACAAAATGGAAACACGGTGCCAAAGTGGATTGTAGGAGATTGGATCTATTGACATGGGTGGATCTATTGTATATGTCACAGTCTTATTACACGAATACCAATATAATATACCAGCACACACATCAGTAATGAACATAAAATGTCATATGAACTTTTATAAAGACTATGAGGAGATTTCATTGCACTTTTCAAGAACTCAAAACCATTGAAAGGCTGTCAGAATGCTATCAGTATAGAATGTTGCTTACCACTGACTACTACTACAAACGTTGTGATATACTGTAAATAGTTATTAGGCTACAATGTGAACTGT

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590584.2 False 2492 mRNA 0.48 2 9360958 9366518
TU2457665 True 1505 lncRNA 0.42 2 9309984 9366463
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118945275 LOC107691784 coding upstream 151129 9209358 ~ 9209829 (+)
LOC110509594 rexo4 coding upstream 219587 9137291 ~ 9141371 (+)
LOC118945282 NA coding upstream 331121 8957803 ~ 9032295 (+)
LOC110509587 fa69b coding upstream 1159598 8173842 ~ 8201360 (+)
LOC110509309 LOC106562955 coding upstream 1225645 8102932 ~ 8135313 (+)
LOC110509604 LOC106562973 coding downstream 697649 10064167 ~ 10309768 (+)
zgc:63972 LOC106562974 coding downstream 1106914 10473432 ~ 10496533 (+)
si:dkeyp-72a4.1 LOC106562976 coding downstream 1239637 10606155 ~ 10618148 (+)
LOC110509315 LOC106562976 coding downstream 1334536 10701054 ~ 10906165 (+)
LOC110509607 LOC106562980 coding downstream 1607924 10974442 ~ 11003230 (+)
G2148870 NA non-coding upstream 159391 9201113 ~ 9201567 (+)
G2148857 LOC106562968 non-coding upstream 180017 9180704 ~ 9180941 (+)
G2148827 NA non-coding upstream 180469 9177170 ~ 9180489 (+)
G2148856 NA non-coding upstream 184735 9176010 ~ 9176223 (+)
G2148853 NA non-coding upstream 188924 9171682 ~ 9172034 (+)
G2149242 NA non-coding downstream 87136 9453654 ~ 9457539 (+)
G2149334 LOC106562972 non-coding downstream 250895 9617413 ~ 9617782 (+)
G2149335 NA non-coding downstream 252119 9618637 ~ 9619279 (+)
G2149459 NA non-coding downstream 415747 9782265 ~ 9782604 (+)
G2150621 NA non-coding downstream 1020007 10386525 ~ 10386756 (+)
G2146821 NA other upstream 1360468 8000129 ~ 8000490 (+)
LOC110509307 LOC106562924 other upstream 2702434 6640782 ~ 6664348 (+)
G2145733 NA other upstream 2841818 6518690 ~ 6519140 (+)
LOC118945315 LOC106593246 other upstream 3087465 6267751 ~ 6274178 (+)
G2149183 NA other downstream 7482 9374000 ~ 9374512 (+)
G2150729 NA other downstream 1095235 10461753 ~ 10462220 (+)
G2151555 NA other downstream 1993867 11359557 ~ 11432252 (+)
G2152150 NA other downstream 2397706 11764224 ~ 11766351 (+)

Expression

LOC110509598(pe2r4) Expression in all Baseline Samples

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LOC110509598(pe2r4) Expression in each Bioproject

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LOC110509598(pe2r4) Expression in each Sample
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Co-expression Network