ttc33 (LOC106568686)


Basic Information

Item Value
gene id ttc33
gene name LOC106568686
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 9365212 ~ 9437537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590585.2
TGAATAACAATTGAGGTTAACGGTTAAACGTTAGCTATATGATAGCCAGTTACTATCTAGCTAACATTCAAACAttagcttgctagttagctatAGTAACTCACTTTCCACGCTAGCCAATTCAATGTGAACAAACCTGCCTTTTTGACATTCCAAACATAAGATTAGAAGTCTCAAGTGTCTGTCAGCAGTAGCGAGTTATTTGCAAGCAGAGAGGTTTCACAATTCTACAGTAACGTTACAGATAATTGACTCATTTCTGTAAAATATGGCTTCGTTCGGCTGGAAAAGGAAAGTGGGCGAGCGGGTGTCCAAGGCAGCGGTGCAGCAGTTTGAAGCCGCAGCGGAGAAGCCGGAGGAAGATGGAGTAGGCAAAGAGGACGAGGTGGACTGGCTTTATGCTATCAAGCGGCGCCGGGAGGTCCTGCTGGAGGACTGCGCTGCCAAAAGCAAGAGACTAAAGGAGGAAGGGGTGGTGCTGGCACAAGAGGGCAGGCACTGGGAGGCCGTTAAGAGGTGGGATGAAGCCATCCAGATGACTCCAGAAAACCCTCTACTGTACGAGATGAAGTCCCAgGTGCTGACCGTCCTGCAAGAGGTGTTCCCGGCGGTGCAGGCAGCAGAGATGGCTGTGAAGCTCCGCCCCCTGTGGTGGGAGGGCTGGCAGACACTGGGCCGCGCCCAGCTTAGTCTGggagaggtggacctgGCGGTGAGGTCTTTCCAGGTGGGGCTCCACCTGTGTCCGTCAGAGCGCCCCCTCTGGTTGGAGGACCTGGCGTGGGCACGGAGGCTGCAGCAGCAAAGACTGGCGGCACGGGACCGGACCCAGCGGGAGGAGGCGGCCCAGcgggaggtcctgagcgctccagAGCTCCAACAGGACTATGACTTTGAGTCCGATGAGGTGGTGGCGGCCTGCACTGCCATGGCCGACAGACAGCGACGCTATGAGGATCTGAAGAGGACGGCGGTGGTGGTAGACGCTGAGGGGAACGCAAGGGAGGTAACCGCggaggaggaggggtcagggGACACACCCTCATCACAGTATCAGTTGATCAAAGCACGAGGGCTATGAGATGTTTCTAAGAACTTAAAAGGGCTGAAATGTGTCTCGTGAAATgggtatttttgtttgtttttgttgagTTTTCCATCTTTAGTCTTATGCATGTCGTtattatgttttgttgtagtaTACAAGAGACTGTGGGTGATGACAGTAGATTTAATCAAGTCAATTATGCTTGTTTTTGTGTTTTATgtatacagtcaggtccaaaatgattggcacccttgataaagattagcaaaatacactggatttttttttttaaagactgcCCTGGCAGAAGCAACCGGGTTTTTGTCTAAAAtgtcctggggcctcatttatcaaccaTGTGTAAATTTCTCACAAAATTCTGGCGTATGTGGAGATACTAGAATTTGCATGCACATCAAATTAGTGGTATTTATCAATCTGTCCCTGGAACATATGCACATGTTTTCATTGATATAACAGAGCGATGCAATATTTGTGTGCTTGTGAGCAAGTGTTACAACCCCCGCCAGTAAAATGCCCTCCATTCACCTTTTATTGTAACAAAAACAAGCACATTTGCTCTGCGATTTGGAGATGTTGGAACTGGGCCATGCTAGTTTCTAAAAGAAAGTGCAATGGGAAATGTGATCACGTTTCCTAAGAGGTGCGGGAAGAATGTTTTAATCTTTTGCAGTGACTTtttcaaaccccccaaaaaacgcATGCCGCCTGTAGCGAGTGCCAAACACTCTGTAAGATGAATTGTCCTTTCGAACAATTTAAAGTAAATGCTACAGCCGACAGGCAAAGGACACATTGTTGTTCAATATTTTGTTTATCAATACGTGATTGTCTCCAGCCTTGGTATAGGCTCTGAGAATAGTAGGAATGTAACGATTTACCGATTTTAGGCATCAGTTCCCggttcaaatgtttaagataTAAGTGCATCTGTCTGAGGAACCCCAAATCTCTTATTTTGTGGCAACTGCTCTTCTCCTTCGGTGTCGAACTAAGCATGTAATTGTGTCGACAGTCATTGATCTACAAGTCATTGTGCATGCGGAACAACCTCGGGcaatatcagtagcctagtcaaactgCGCTAGGTAGCGTCTTTTCCTGATCTGGAACATCTGTGCGTCACCTTCAACATTCAACTGTTTGTAAAATGGTTTGTGCAATATTaggctttatttgttttttttctatGAAATGCGCTgttgaaattgtgttttaccgAAATAAAAGTAGCCTAAGCTACTGCTGGAAACAAC
>TU2458082
TAGAAAGCAGCACAGCATCGGTAACCGCGTTTTGAAAGTGGGCGAGCGGGTGTCCAAGGCAGCGGTGCAGCAGTTTGAAGCCGCAGCGGAGAAGCCGGAGGAAGATGGAGTAGGCAAAGAGGACGAGGTGGACTGGCTTTATGCTATCAAGCGGCGCCGGGAGGTCCTGCTGGAGGACTGCGCTGCCAAAAGCAAGAGACTAAAGGAGGAAGGGGTGGTGCTGGCACAAGAGGGCAGGCACTGGGAGGCCGTTAAGAGGTGGGATGAAGCCATCCAGATGACTCCAGAAAACCCTCTACTGTACGAGATGAAGTCCCAgGTGCTGACCGTCCTGCAAGAGGTGTTCCCGGCGGTGCAGGCAGCAGAGATGGCTGTGAAGCTCCGCCCCCTGTGGTGGGAGGGCTGGCAGACACTGGGCCGCGCCCAGCTTAGTCTGggagaggtggacctgTCCCCTCTGGAAGGTAAAGAAACGTCTGCGAGGTGCTGATGACGTCCTTCAACTCGCGGGACACCAGTGACGGGGAGTCCAGGGAGACGATGGACGAATTCCGATGACCTTCACCTCCGCAGCAGAATTGACCACTGACCCCTGAGCCCCGCCCCTGGCTGCCCAAGCGACAGAACAAACACTTGATCTTCTCCACCAGTTTCAGTAGGACGGTCTTCCTCAGCAGGATGTAGATCCAGGGGTCGAGGATGGGGTTGACGGAGGCAATTCGGATGGCGTGGAGATCTGGGTTCTTCTCTATGGGAGTTGAATGGGCGTCAAATTCAATCCTGGACAGCTGGTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590585.2 False 2325 mRNA 0.47 4 9383513 9437443
TU2458082 True 795 TUCP 0.58 5 9365212 9437537

Neighbor

gene id symbol gene type direction distance location
LOC110509597 LOC106562968 coding downstream 141967 9177157 ~ 9241546 (-)
ptcd2 ptcd2 coding downstream 213154 9166240 ~ 9170359 (-)
LOC110509595 LOC106562965 coding downstream 232648 9141989 ~ 9150865 (-)
LOC110509593 LOC106562963 coding downstream 253198 9028146 ~ 9130315 (-)
LOC118945710 NA coding downstream 359591 9023795 ~ 9023922 (-)
LOC100653467 prkaa1 coding upstream 6607 9444050 ~ 9457519 (-)
aif1l LOC106562971 coding upstream 23895 9461338 ~ 9501419 (-)
lamc3 LOC106562972 coding upstream 72924 9510367 ~ 9760908 (-)
LOC110509356 NA coding upstream 613761 10051204 ~ 10057769 (-)
ttll11 LOC106562979 coding upstream 1485627 10923070 ~ 10969315 (-)
G2149072 NA non-coding downstream 101181 9237804 ~ 9282332 (-)
G2149050 NA non-coding downstream 126223 9206372 ~ 9257290 (-)
G2149079 LOC106578490 non-coding downstream 132326 9250885 ~ 9251187 (-)
G2149040 NA non-coding downstream 187539 9195756 ~ 9195974 (-)
G2149628 NA non-coding upstream 45298 9482741 ~ 9484781 (-)
G2149707 NA non-coding upstream 152757 9590200 ~ 9591009 (-)
G2149729 NA non-coding upstream 181211 9618654 ~ 9619175 (-)
G2150466 NA non-coding upstream 740730 10178173 ~ 10178671 (-)
G2150605 NA non-coding upstream 940317 10377760 ~ 10378011 (-)
LOC110509586 LOC106562956 other downstream 1215482 8130783 ~ 8168089 (-)
G2146036 NA other downstream 2733850 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 2789039 6579264 ~ 6594474 (-)
G2145542 NA other downstream 3130647 6137289 ~ 6252866 (-)
G2145618 LOC106591448 other downstream 3235019 6141066 ~ 6148494 (-)
G2151189 NA other upstream 1280578 10718021 ~ 10799318 (-)
G2151771 NA other upstream 1555723 10993166 ~ 10993879 (-)
LOC100135966 rps27a other upstream 1804551 11241994 ~ 11244060 (-)
LOC110509625 LOC106568355 other upstream 2019175 11456618 ~ 11525214 (-)

Expression


Co-expression Network