LOC100653467 (prkaa1)


Basic Information

Item Value
gene id LOC100653467
gene name prkaa1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 9444050 ~ 9457519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590586.2
TTCACGCTGTTTCGCATTTTCTTGCTCGCTCCAGCTAGTCTGCTCCGCCTGCCCGCAGCAGCAGATAGGCTAGGCCACTGCGGGAAAGATGGCGACGACGGATAAACAGAAACATGAAGGAAGAGTGAAAATCGGACATTATATTCTTGGAGACACACTTGGAGTGGGGACGTTCGGGAAAGTTAAAGtgGGTCAGCATGAGCTGACCAAACACCAGGTGGCTGTGAAGATCCTGAACAGACAGAAGATCCGCAGTCTGGATGTGGTGGGGAAGATACGTAGAGAGATCCAAAACCTCAAGCTCTTCAGGCATCCTCACATAATTAAGCTGTACCAGGTGATCAGCACCCCAACAGACATCTTCATGGTGATGGAGTACGTGTCCGGAGGAGAGCTCTTTGACTACATCTGCAAAAACGGAAAGctggaggagaaggagagccgTCGTCTGTTCCAGCAGATCATCTCAGCAGTAGACTACTGCCACAGACACATGGTGGTGCACAGGGACCTGAAACCTGAGAACGTCCTGCTGGACGCACAGATGAACGCCAAGATCGCCGACTTTGGTTTGTCAAACATGATGTCGGACGGAGAGTTTCTGAGGACAAGCTGTGGTTCTCCGAACTATGCTGCCCCTGAAGTCATCTCTGGAAGGTTATATGCAGGTCCTGAGGTGGACATCTGGAGCAGCGGGGTGATCCTATATGCCCTGCTGTGTGGGACACTGCCCTTCGACGACGACCACGTGCCAACACTCTTCAAGAAAATCTGTGACGGGATCTTCTTCACGCCCCAGTACCTGAACCCCTCTGTCGCCGCCCTGCTCAAACACATGCTGCAGGTGGATCCCATGAAGAGGGCCACCATCAAAGAGATCCGAGAGGATGAATGGTTCAAAGATGAGCTCCCCAAGTACCTGTTTCCAGAAGACCCATGCTACAGCAACAACATGATCGATGACGAGGCCCTGAAGGAGGTGTGTGAGAAGTTTGAGTGCACTGAGGAGGAGATCCTGACTTGCCTGTACAGCCGCAACCACCACGACCCCCTGGCTGTGGCCTACCATCTCATCATCGACAACCGACGCATTATGTCCGAGGCCAAGGACTTCTACCTGGCCTCCAGTCCCCCAGACTCATTTCTGGACGACCAGCATCTGACCGCCGCGGCCGGCCTTAAGCCCCACCCGGAGCGTATGCAGCCCTTCCTGGCGGGGGAGACCTCTCCCCGGCCGAGACACACGCTGGACGAGCTGAACCCCCTGAAGTCGAAGCACCAGGGGGTGAGGCGGGCCAAGTGGCACCTGGGGATCAGGAGCCAGAGCAGGCCAAATGATATTATGTCTGAGGTGTGCCGTGCCATGAAGCAGCTCGACTACGAGTGGAAGGTGGTGAACCCGTACTACCTGCGTGTGAAGAGGAAGAACCCAGTTACGGGCATGCAGACCAAGATGAGCCTTCAGCTCTACCAGGTGGACGGCAGGACCTACCTCTTGGACTTCCGTAGCATAGACAATGACATGTTGGAGGCTAAATCTGGGACTGCCACTCCTCACCAGTCTGGTTCAGTGGGGAACTACCGCACGGCCCTTAAGAATGAAGCTGCAGCTGCTGCAGAGGGGGGGTCCCAAACTGAGGGGGCTAAGGAGAACGCTACCCCTGCcacatctctccctcccactaAGGCCTCAGAGAGCTCCCTGGCCTCCTCGCTCACCTCCTCCGTTGACTCAACAGGAGGCGACCTCGCACCCATGACTGCGGTTCCGCGGCCCGGCAGCCACACCATAGAGTTCTTTGAGATGTGCGCCAATCTCATCAAACTACTTGCACGATAGCTTGCAATCAAATAAAACAACGTTAGCCTTTTTTCCTCTGAGTGTCTTTATAAGCAATAAGCATGCAACCGATTTCATGGCTCGATTCATCCCTACCGCAGGCGGGTGAGACTGCTAGGGTTGTTCCAAGGCACTGATGATGCAGGTTCAGTTCGCAACCCTCCTGACTGACTTGGGAGTTGTCAGAGCACGGGTGGGCTTTAGGAAAAGGTGAACGACAATGACCAAGCAACTTCATTATAATCATGACAGAATACTATTTTAGAGGTGGTTTTACATTTTCATGATCATTATTATTGGCCTACGACTATTTCCCCCCCTATTTGATCACGTTCCAAAcagcgtatatgtgtgtgtgctaaGTCTGAGTGATGCACAGAATTTGCTGTACTGTGCTCAGTGGGCGTTGCTGTGCTTTTTTTCTATAGAGAAAACAAACGCACGTTTCTGCGTGCGGAAAGGAGAGCTGTAAGGTTTTGGGGGGTGCACTTAGGGTGGCTGAGGGGAACGAGGCACTTTTGCACAGTTCCGTCTTTCTCTATAGTAGATGTCTGAGATGCTTGTGCAAATTCGGGACACTGCACTACAGGCCTTTCAGGGGTAGCTGCACTGACCATAACATGGGTTGTCATGCCAACAATGTCCGTTTGACTCACTGAGGAAGTGCAATTACCCTCTCGATCGCGTCAGGCGAAAAAGGGAGTTACTACTTcatcagaattatttttttttttgtgaaattgAATTAAGACTAGATTTCAATGTTTGTCTGTTTGGATTGGTCTGTCCCCTACATAATATAAAGAATTTAAAAATATATGCATTTTGATTTCAGTGCTTTAAATGGGAATTGTAGATTTATATTGAGAAATTATTACTGACTGAAaggttcgttttttttttttttttttttcgttaCGATGCCATTTTATTCCTTTACAGCTTTTTAAAATTatcaattttattttttaatcattTCTATGCACATGATTGTTTACCCTCACACTCTCAAAATGAGACCCACTGTCCTATAATGAATTCAAAAGTTGATTTTGTTAGATTTGTAAAATTATCTTGAGGTTATGGGCTACATGTGTTCATAAATCTGAATGCATGTTGACTGAGTGATGTGCATTTTAGCAGGATTGAACTAATTTTGTACACATGTCCATTGAAAGATCGGGGGCATTTGTAAGTGGTGATTTGCAGCAAGTACATGCAGTGCACGGACAATGTGTATTGATAAAGGAAACAAATCAATATTTTTTTCTGGTTTCAAAATTCTATTTCACTTTTCTTGGCCCACATCCCCCACAAGAAGCTACATTTGAATTTAAGTTTACGTATTTTCCCAAACCTTAAATTTGTCATGTGCATctggggagtttttttttttctgtcaTTCTGTTAGCTGCCTTATCAATACTGTTGATCAGTTGTATATCAGTGAGTATAAAAGAGACATCTACTTCTATCCTCTATTGCGTGGGGCTGGTTTTGGTCTGAAGAAATCTTGCATATGGATTATGTGACTGCAAGGTCTCCTTTTTAGACCAAATGCTCATTGAAATATTTATAGGACTACAAACAAACTCTTTAGTTTTCAAGGATGCGTAAGTTCTGATTCCAAGTAGTGCATAAGGTGAATTGTGGGGTTGTTTTGAAAAAGTGTGTGAGGCCATGATCGGCTTATGTGAGTTGCACATTGGGTGAGTAGTTTTTCTCCTTTTAAGTGGGAGTGTTAATTTCTGACTATTTGCAGGATCAATATCAATCATTGTATCTGTCTTCACTGCTTTAAACCTTGTTTTATTTGTTGTGTAAAGGGACCCTACTACTAGAATGACCAATGTAAATGTCAAATGGACAGTGTTTAAATCATTTGTATAAATAACTGCCTAATAAAACAGATCAATTGCACAAGT

Function

symbol description
prkaa1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within negative regulation of hh target transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including axis; digestive system; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in Huntington's disease; breast cancer; and colon cancer. Orthologous to human PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1).

NR:

description
5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1

GO: NA

KEGG:

id description
K07198 PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590586.2 True 3765 mRNA 0.47 9 9444050 9457519

Neighbor

gene id symbol gene type direction distance location
ttc33 LOC106568686 coding downstream 6607 9365212 ~ 9437537 (-)
LOC110509597 LOC106562968 coding downstream 202504 9177157 ~ 9241546 (-)
ptcd2 ptcd2 coding downstream 273691 9166240 ~ 9170359 (-)
LOC110509595 LOC106562965 coding downstream 293185 9141989 ~ 9150865 (-)
LOC110509593 LOC106562963 coding downstream 313735 9028146 ~ 9130315 (-)
aif1l LOC106562971 coding upstream 3819 9461338 ~ 9501419 (-)
lamc3 LOC106562972 coding upstream 52848 9510367 ~ 9760908 (-)
LOC110509356 NA coding upstream 593685 10051204 ~ 10057769 (-)
ttll11 LOC106562979 coding upstream 1465551 10923070 ~ 10969315 (-)
LOC110509609 LOC106562981 coding upstream 1546571 11004090 ~ 11018061 (-)
G2149564 NA non-coding downstream 45483 9346387 ~ 9398567 (-)
G2149072 NA non-coding downstream 161718 9237804 ~ 9282332 (-)
G2149050 NA non-coding downstream 186760 9206372 ~ 9257290 (-)
G2149079 LOC106578490 non-coding downstream 192863 9250885 ~ 9251187 (-)
G2149040 NA non-coding downstream 248076 9195756 ~ 9195974 (-)
G2149628 NA non-coding upstream 25222 9482741 ~ 9484781 (-)
G2149707 NA non-coding upstream 132681 9590200 ~ 9591009 (-)
G2149729 NA non-coding upstream 161135 9618654 ~ 9619175 (-)
G2150466 NA non-coding upstream 720654 10178173 ~ 10178671 (-)
G2150605 NA non-coding upstream 920241 10377760 ~ 10378011 (-)
LOC110509586 LOC106562956 other downstream 1276019 8130783 ~ 8168089 (-)
G2146036 NA other downstream 2794387 6649178 ~ 6649663 (-)
LOC110509559 NA other downstream 2849576 6579264 ~ 6594474 (-)
G2145542 NA other downstream 3191184 6137289 ~ 6252866 (-)
G2151189 NA other upstream 1260502 10718021 ~ 10799318 (-)
G2151771 NA other upstream 1535647 10993166 ~ 10993879 (-)
LOC100135966 rps27a other upstream 1784475 11241994 ~ 11244060 (-)
LOC110509625 LOC106568355 other upstream 1999099 11456618 ~ 11525214 (-)

Expression


Co-expression Network