LOC110509607 (LOC106562980)


Basic Information

Item Value
gene id LOC110509607
gene name LOC106562980
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 10974442 ~ 11003230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590598.2
GGCACTTACCCCACCCTTTGTACCCTACCTGTGATGCCGCTGCCGGTGCACCTGGGCGCACCTGTATTCGTTTGGTCGGTTACTCTAGGCCTAAGCTCTGACAGATCGAACGCTTTAGCCTAGCCTACTTTATCCCACTTTTGATAAACAAGTTTATGTTAGGGTAGGGTAGGCTAGGCTACTGCGTTTTTAGATCGGTATTTGGTTAAGAAACACTTTCCCATTTTATGGAATCTATCTCCGCATGAGAACGAGAACCAGGCTATGCGCGTCATCAGTAGAATGGATGGTAGTTAAATCTGTCATTGCAGACGGATGGTTTGAATAAGGTAAAGGAGAGAAAAACGAAAGTTGTTCCAGTCCGCATCACTCTGCAACAATGGAAATAGATAGTATGGCGGCAAACAGCGCACTCATCAGTGCCAGGGAAGGTGGAGGAGGAAAAGGCAGGAGTTGGAAATGGAGAAGGATGCTGCGCTTCCCTCACATAAGCCAGTGTATGGAGCTGGGTAACACCATcgcGAGAGACTACTCCAGTCTGTGTGTGAAGCAGCCTATTGGAAGAAAACTATTCTGTCTCTTCTGTCAGAGCAAACCTGAGCTACGGCACTGCAACTCCCTACTGGACAAAATGGGGGAGTATGAGGTGCAATCAGATGAAGATAGGAAGAGTTTTGGCATGCAAATCATTAACAGGTTCCTCAGTAGACAGTCGTCTGAGTGTGTACAGGTTGTGGAGAGCTATGGTAAGAGGTGCAGAGAGAGTCTGGAGGTGAGGCACGGTAGAGACATCTTCATTGACTGCACAGATGACCTCCATGAGTTCCTGAGTGGTGCCCCCTTCCTTCAGTACCTGCAGAGCATGTACTTTGAGCGTTTTCTGCAGTGGAAGATGGTAGAGAGACAACCCGTTACCAAACACACCTTCAGACAGTACAGGATGCTGGGCAAGGGAGGCTTCGGGGAGgTGTGGGCATGCCAGGTGCGAGCCTCTGGGAAGATGTATGCATGTAAGAAGCTGGAGAAGACTCAcatgaagaagaggagaggagaagccaTGGCCCTCAACGAGAAACAGATACTGGAAAAGCTCAACAGCAGATTTGTGGTGAGTCTGGCGTATGCGTATGAGACCAAACAATCTCTTTGTCTGGTGCTAAGCATAATGAACGGAGGAGACCTGCGGTTCCACATCTATAACATTGGTCCTCCAGGCCTGGAGCCGGCCAGGGTTCGGTTCTATGCTGctgaggtctgctgtggtctccaccacctccaccagagGAACAttgtctacagGGATCTAAAACCGGAGAACATACTTCTGGATGACAATGGGCACATCCGTATCTCAGACCTGGGCCTGGCGGTGAAGCTATCCGGGGGGAATCTGGTACGAGGCAGGGTGGGGACCCTGGGTTACATGGCTCCAGAGGTGATTGGCCATGAGTACTACGGGATAAGCCCTGATTGGTGGGGCCTGGGCTGCCTTGTGTACGAGATGACGGCCGGACGATCCCCATTCAAGAGACAAGGGGAGCAATTGACAgcaaaagagatggagagaaggatacAGGAGACGGAGGAGGTGTACAGGAAGACATTTAGCAGCGAGACAGAAGACTTCTGCCGCTCTCTGTTGACCAAAGACCCGAGACAGAGGTTAGGGTGTCGAAGGTGTGGGGTGGAAGGGGTCAAGTCCCATCCCTTCTTCAGCACcatcaacttcaggaggctggaCGCCGGAGTCATTGAGCCACCCTTCAAACCAAATcCCAGGGCGGTGTACTGCAAGGATGTGCAGGACATTGATGAGTTctccacagtaaaaggagtcaTTTTGGAGAGGACAGACGACGACTTCTACACCAAGTTTAACACAGGCTGCGTGGCCATACCCTGGCAGACAGAGATGATAGAGATGGGTTGTTTCAAGGAGCTGAATGTGTTTGGCCCTCAGGGTTCTAGACCCCCTGACCTGGACTGGGGCCAGAATCCTGCCCCAGAGAAACCTAAACGTAGACTGCTGGACCGCATCTTCCACAAGACACACACCTGTTGATAGATGGGCTTCCTCAAACCCACTGCAACATTAGTTGTAAATGAGAGCATTCCCTCAATCAGCTTGTAGAATAAAATTATTTGTTGGTGATCACTCAGCACACTGATCAATACACAGATCAACCAGTTagtacttttttttcttttttttaaatgtatgttacctttatttaactaggcaagtcagttaagaacaaattcatattttcaatgactgcctaggaacagtgggttaacttgttcaggggcagaatgacagatttgtaccttgtcagctctgggatttgaacttgcaacctttcggttactagtccaaagctctaaccactaggttagaGCCTGCCGCCTTCTGCAAATCAACAACCCAAACACAGCCAAAGAAGAACAAGAATCTGTGGCCAGAtgttctcactttctctccagcACTTAAAGAGCGCACACTTTAAAGATGAAGTGACAAGACGGGGCTTTATTTAAGAGATGTCTTTAAAATGTCTCTGTCATACACTCGGGCCATACCATCTATCATTCACCAGCACAGGCCAAAGGGACCATCCCCAAACTATCATACTGAGGAGAGGCGGTCTTATTTCTGTAAAACACTCATTTAGAATGATCAAAGGGAAACCTCAGCAAAGAGTGTTTTGATTTTGTACCTACCTGTGTTTTGTATGTAACCTCAGAATAAAGAGCCT
>TU2459996
ACTGCATCggtgcttttctctctctcgctctcactaaTCTTTCTCTTTCACCCCCCACCGCTCTCTCAGCTGTTGACCAAAGACCCGAGACAGAGGTTAGGGTGTCGAAGGTGTGGGGTGGAAGGGGTCAAGTCCCATCCCTTCTTCAGCACcatcaacttcaggaggctggaCGCCGGAGTCATTGAGCCACCCTTCAAACCAAATGTACATACCCTATCTGTACCCACTAACCTCTACTTGTTAACCC

Function

NR:

description
G protein-coupled receptor kinase 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590598.2 False 2756 mRNA 0.48 15 10974442 11003230
TU2459996 True 250 lncRNA 0.52 1 11001776 11002025

Neighbor

gene id symbol gene type direction distance location
LOC110509315 LOC106562976 coding upstream 68277 10701054 ~ 10906165 (+)
si:dkeyp-72a4.1 LOC106562976 coding upstream 356294 10606155 ~ 10618148 (+)
zgc:63972 LOC106562974 coding upstream 477909 10473432 ~ 10496533 (+)
LOC110509604 LOC106562973 coding upstream 664674 10064167 ~ 10309768 (+)
LOC110509598 pe2r4 coding upstream 1607924 9309984 ~ 9366518 (+)
LOC110509610 LOC106562982 coding downstream 17840 11021070 ~ 11022671 (+)
LOC110509611 LOC106562983 coding downstream 22519 11025749 ~ 11044674 (+)
LOC100136324 sr-bi coding downstream 73235 11076465 ~ 11112463 (+)
LOC110509317 LOC106562986 coding downstream 165355 11168585 ~ 11204291 (+)
LOC110509615 LOC106562990 coding downstream 203766 11206996 ~ 11215361 (+)
G2151315 NA non-coding upstream 32702 10941520 ~ 10941740 (+)
G2151307 NA non-coding upstream 44754 10929485 ~ 10929688 (+)
G2151305 LOC106562979 non-coding upstream 46843 10927371 ~ 10927599 (+)
G2151080 NA non-coding upstream 60243 10913865 ~ 10914199 (+)
G2150952 NA non-coding upstream 215654 10742087 ~ 10758788 (+)
G2151341 NA non-coding downstream 31 11003261 ~ 11005434 (+)
G2151415 NA non-coding downstream 116119 11119349 ~ 11119550 (+)
G2151417 NA non-coding downstream 119713 11122943 ~ 11123211 (+)
G2151421 NA non-coding downstream 124033 11127263 ~ 11127564 (+)
G2151397 NA non-coding downstream 132680 11135910 ~ 11139663 (+)
G2150729 NA other upstream 512222 10461753 ~ 10462220 (+)
G2149183 NA other upstream 1599930 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 1942147 8957803 ~ 9032295 (+)
G2146821 NA other upstream 2973952 8000129 ~ 8000490 (+)
G2151555 NA other downstream 357155 11359557 ~ 11432252 (+)
G2152150 NA other downstream 760994 11764224 ~ 11766351 (+)
G2152639 NA other downstream 1297562 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1756650 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2665059 13668289 ~ 13669170 (+)
G2151358 NA non-coding upstream 5 11001305 ~ 11001771 (+)
G2151347 NA non-coding upstream 19416 10981839 ~ 10982360 (+)

Expression


Co-expression Network