LOC110509610 (LOC106562982)


Basic Information

Item Value
gene id LOC110509610
gene name LOC106562982
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11021070 ~ 11022671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590601.2
TCTTGACCTGTATAAATAGATGTGGCGGAAGGGCCACATGCATCAGATCACAGGGAAGCAAGGTGGATACGATACGTGCGTAGTGGTCGTCTACTCGAGTTCTCTGCCACGGTCTTCAGCGAACAACGTGCCTTTTCGTCCAATTTTACAGAACTAAAAATAGAAATGCAGCCAGACAAGTTGCTGCAGGTCAGCAGAACCTCTTTCTCTGTGGCAGACATCCTGGATCCGTCTAAATTCACTGGGAGACCAAACATTACTCATCCAAACCATGGTTCAATTCAGATTGACGCAGCGAGAGGGACCACAGGTGGGGCAGCCATTACTGAACGCCAATCCAGAGTAGAATTTCCAAGTGGTCCAGCAGCCAGTGAATGCTCCACCACAGTGGAATCAGCAATGTCGCCGGTAGCGAGCGAGGCCCGTCCTGCATCTGCATGCCATTGCCCGGAGAGGTCAAAGGGCAAGTTGCGGCGGGTCCGGACAGCGTTCACCCTGGACCAACTACGCATTCTAGAACATAGTTTCCATAGCAGCCGCTACCTGTCTGTCTTTGAGCGCTACGCTGTTGCTTCGACACTCTGTCTCACGGAGACCCAGGTGAAGATCTGGTTCCAGAACCGACGCACCAAGTGGAAGAAAGAGTGTGAGGGGAAAGGGGTGCCTGAAGAGCAGCTCCAGTGTGGGGTCGGATACCCCTCACCGCCTCCTGTCTATCCTACAACCCGGCCACTGTACAACACTATGCGTTGTCACCAGGGACCACAGATTCAACTATTCACGCCACCGTGCTTCCTCGTTCCACAATACCACCGTCGTCCGTATTAAATGAGAAAGGATGTAGCCTGTTTGTAAGAGCTAACGTTGGTGTTTTGTAAGGAGATTGAAGTTGGCGTTCACAGTTTAGATACTGTAGCCTGCCCTATCCTAAAtgtatttgtgcaatatactatAGTCCACTGTAAATGAATGTAAGTATTTATAAATGAGTTACTATTTATGTGCTGTTTGAAAGCCAGTGGGAAAACTATGCCAAGCGATCCTGTAATGTGCCAAAGGATTATTACTGTGACATGTTGACTGATAGGCTTATCTTTCTTACTGTTTGAAAGGTTTGAACTTATTTTGATACATTTCCATGAGCATGAGATATTTTTGTACTGTACCACGAGTGTTCTTCCAAATAAAATAAGTCAATCAA

Function

NR:

description
NK1 transcription factor-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590601.2 True 1201 mRNA 0.47 2 11021070 11022671

Neighbor

gene id symbol gene type direction distance location
LOC110509607 LOC106562980 coding upstream 17840 10974442 ~ 11003230 (+)
LOC110509315 LOC106562976 coding upstream 114905 10701054 ~ 10906165 (+)
si:dkeyp-72a4.1 LOC106562976 coding upstream 402922 10606155 ~ 10618148 (+)
zgc:63972 LOC106562974 coding upstream 524537 10473432 ~ 10496533 (+)
LOC110509604 LOC106562973 coding upstream 711302 10064167 ~ 10309768 (+)
LOC110509611 LOC106562983 coding downstream 3078 11025749 ~ 11044674 (+)
LOC100136324 sr-bi coding downstream 53794 11076465 ~ 11112463 (+)
LOC110509317 LOC106562986 coding downstream 145914 11168585 ~ 11204291 (+)
LOC110509615 LOC106562990 coding downstream 184325 11206996 ~ 11215361 (+)
LOC118945263 NA coding downstream 202405 11225076 ~ 11228621 (+)
G2151341 NA non-coding upstream 15636 11003261 ~ 11005434 (+)
G2151358 NA non-coding upstream 19299 11001305 ~ 11001771 (+)
G2151347 NA non-coding upstream 38710 10981839 ~ 10982360 (+)
G2151315 NA non-coding upstream 79330 10941520 ~ 10941740 (+)
G2151415 NA non-coding downstream 96678 11119349 ~ 11119550 (+)
G2151417 NA non-coding downstream 100272 11122943 ~ 11123211 (+)
G2151421 NA non-coding downstream 104592 11127263 ~ 11127564 (+)
G2151397 NA non-coding downstream 113239 11135910 ~ 11139663 (+)
G2151424 NA non-coding downstream 118083 11140754 ~ 11144758 (+)
G2150729 NA other upstream 558850 10461753 ~ 10462220 (+)
G2149183 NA other upstream 1646558 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 1988775 8957803 ~ 9032295 (+)
G2146821 NA other upstream 3020580 8000129 ~ 8000490 (+)
G2151555 NA other downstream 337714 11359557 ~ 11432252 (+)
G2152150 NA other downstream 741553 11764224 ~ 11766351 (+)
G2152639 NA other downstream 1278121 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1737209 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2645618 13668289 ~ 13669170 (+)

Expression


Co-expression Network