ddx56 (ddx56)


Basic Information

Item Value
gene id ddx56
gene name ddx56
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11046317 ~ 11053829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590604.2
CGTCCCGGCTCAAGTGATGGATGACGTATAAGTCAAGCGACGTACACACGTGTCGAAGCCTGGTGGAAGCACTAGAGACAAGAAATGGCTACCGACAGGCTGCAGTTCCATGAAATGGGCATAGATGATCGCATTTTAAAGgCGCTGGCGGACTTGGGCTGGGCTCAGCCCACTTTGATCCAGGAGAAAGCCATTCCACTGGCGCTGGAGGGCAAGGACATTCTAGCCCGGGCCAGGACTGGCTCAGGAAAAACAGCTGCTTACGCTGTGCCCGTCATCCAGCGTATTTTGACATCCAAACAAAATGTCCGTGAGCAGGCAGTGAGAGTGTTGATCCTGGTTCCTACCAAGGAGctggggcagcaggtacaggCCATGATCCGCCAGCTGACTGCCTACTGTGCCAGAGACGTGAGGGTGGCAGACATCTCCGGCAAGGCTGACCTGTCTGCCCAGAGGCCCATCCTGATGGAAAAGCCAGATGTGGTAGTGGGGACCCCCTCTAGGGTTCTGGCCCACCTCAGTGCCCAGAGCCTGGACCTGCAGGCCTCGCTGGAGACCCTGGTCATAGATGAGGCTGACCTGCTCTTCTCCTTCGGCTTCGAGGCCGACCTCAAGAGCCTGCTATGCCACCTGCCAAAGATCTACCAGTCCTTCCTAATGTCAGCTACTCTCAGCGAGGATGTCCAGGCCCTGAAGGAACTGCTGCTGCACAATCCTGTGATTTTAAAGCTGCAGGGCTCCCAGCTGCCAGACAGCTCCCAGCTGCAGCAGTACAGTGTTCAGTGTGAGGAAGAGGACAAGTTCCTGCTCATCTACACCCTGTTGAAACTGCACCTGGTTCAGGGCAAGACCCTGGTGTTTGTTGGGGCAGTGGAGAGGTGCTACAGACtcaaactgttcctggaacagTTCAGCATCCCCACCTGTGTACTCAACTCTGAGCTGCCTGTCCACtccagGTGTCACATCATAACCCAGTTTAACCAGGGGTTCTATGATTACATCATCGCCACGGACGAGCAGGTATTGGCTGATCCCACCACCACAGCGCAGGCTGCCGAGGGGaaagggaagaagaagaagaagaatgcaGGGAGAGCCAAGGACAAGGAGTACGGCGTCTCCAGAGGAATCGACTTCCAGAATGTCTCCAACGTCATCAACTTTGACTTCCCCACCACCGTGGAGTCCTATATCCACCGCGTTGGACGAACGGCACGAGCAGACAACCCAGGCACCGCGCTCACCTTCATCTCACACACAGAGCTCCCCCTGCTGGCAGAGGTGGAGGACGCACTCATTGGCGATAACACTGAGTGTGCTCTGAAGCCGTACGGGTTTAAAATGGAGGAGATTGAGGGCTTCAGATACCGTTGCCGGGATGCCATGAGGTCAGTAACTAAGCAGGCGGTGAGGGAGGCCAGACTGAAAGAGATCAAACAGGAGCTGCTCAACTCAGAGAAACTCAAGACGTACTTTGAGGACAACCCCCGAGACCTGCAGCTGCTGAGGCACGATAAAGACCTGCACCCTGCTGTCATCAAGCCACACCTGAAGAACGTACCAGAATACCTCATCCCTCCGACGCTGAGGGGAGTGGCCAACCCAATGTCtggcaggaagaggaggaggagagagaagcccAAACCTGACGGGGTCGTCAAGACGACCTTTAAGAAGGACTTCCGAGGCAAGAACCCCTTGAAGAGTTTCCACTACACCGGGGGGAGGAGCCGAGGGGGCAAGGCTGGCAAATCCTAGGCCTCCATGTTAACGTGCACCAATCAGACTTGCTGTGCACAGCTGGCCTATGACATCACCAGTTTCCAGATCAGTTCAGGTGGAGAGGAGACAAACTGAGGAAGCCATtgtagactactgagatgcagccggAGTGTCCAACATCAGGGTGGTATTCACTAGACcccaaacggaagaaaaccgaCTGAAACAGGGCGGGACTGCCTGAACttttccaataagaaacacttatTTGAGTTTTGCTACGTCTTGaaacggtgtgcactaatgaataccaCCCACGTTTGAGGAACCTCCCAGCAGCACCGTTACTCCTCTGTCAGTGAACCAACATCCTCGTTTCCATTGTCTGGTTAGAAAACCTTCTGTGAACTCAACAGAATGTCCCTTCCCTCAACACAACAGGTGTTTATCACAGTAATGTAACAATGACTGCATTACTCTGAACTTCCACTGAAGCAAATTACCTTCACTAGTGTTCAAAATCCTAATTTGAAGAACGAAAATTGCCATTTAGTTTCAGTAAGTAACTTTCTATTGTTGAATTGGGATCTCGATTGACTTCCGTAACTGAAATGCAACACCTGTTTTACGACACACGATGTACCTTGAAATGTCCATGTGATTTCAGATGGTTACATGTGGGTATTGTTTCTTTGTAACATAATAATTCAGAAAAGTGTAACATTTTATTAAATGGTTTGTGCTCTTTAA
>XM_021590605.2
GCGTCCCGGCTCAAGTGATGGATGACGTATAAGTCAAGCGACGTACACACGTGTCGAAGCCTGGTGGAAGCACTAGAGACAAGAAATGGCTACCGACAGGCTGCAGTTCCATGAAATGGGCATAGATGATCGCATTTTAAAGgCGCTGGCGGACTTGGGCTGGGCTCAGCCCACTTTGATCCAGGAGAAAGCCATTCCACTGGCGCTGGAGGGCAAGGACATTCTAGCCCGGGCCAGGACTGGCTCAGGAAAAACAGCTGCTTACGCTGTGCCCGTCATCCAGCGTATTTTGACATCCAAACAAAATGTCCGTGAGCAGGCAGTGAGAGTGTTGATCCTGGTTCCTACCAAGGAGctggggcagcaggtacaggCCATGATCCGCCAGCTGACTGCCTACTGTGCCAGAGACGTGAGGGTGGCAGACATCTCCGGCAAGGCTGACCTGTCTGCCCAGAGGCCCATCCTGATGGAAAAGCCAGATGTGGTAGTGGGGACCCCCTCTAGGGTTCTGGCCCACCTCAGTGCCCAGAGCCTGGACCTGCAGGCCTCGCTGGAGACCCTGGTCATAGATGAGGCTGACCTGCTCTTCTCCTTCGGCTTCGAGGCCGACCTCAAGAGCCTGCTATGCCACCTGCCAAAGATCTACCAGTCCTTCCTAATGTCAGCTACTCTCAGCGAGGATGTCCAGGCCCTGAAGGAACTGCTGCTGCACAATCCTGTGATTTTAAAGCTGCAGGGCTCCCAGCTGCCAGACAGCTCCCAGCTGCAGCAGTACAGTGTTCAGTGTGAGGAAGAGGACAAGTTCCTGCTCATCTACACCCTGTTGAAACTGCACCTGGTTCAGGGCAAGACCCTGGTGTTTGTTGGGGCAGTGGAGAGGTGCTACAGACtcaaactgttcctggaacagTTCAGCATCCCCACCTGTGTACTCAACTCTGAGCTGCCTGTCCACtccagGTGTCACATCATAACCCAGTTTAACCAGGGGTTCTATGATTACATCATCGCCACGGACGAGCAGGTATTGGCTGATCCCACCACCACAGCGCAGGCTGCCGAGGGGaaagggaagaagaagaagaagaatgcaGGGAGAGCCAAGGACAAGGAGTACGGCGTCTCCAGAGGAATCGACTTCCAGAATGTCTCCAACGTCATCAACTTTGACTTCCCCACCACCGTGGAGTCCTATATCCACCGCGTTGGACGAACGGCACGAGCAGACAACCCAGGCACCGCGCTCACCTTCATCTCACACACAGAGCTCCCCCTGCTGGCAGAGGTGGAGGACGCACTCATTGGCGATAACACTGAGTGTGCTCTGAAGCCGTACGGGTTTAAAATGGAGGAGATTGAGGGCTTCAGATACCGTTGCCGGGATGCCATGAGGTCAGTAACTAAGCAGGCGGTGAGGGAGGCCAGACTGAAAGAGATCAAACAGGAGCTGCTCAACTCAGAGAAACTCAAGACGTACTTTGAGGACAACCCCCGAGACCTGCAGCTGCTGAGGCACGATAAAGACCTGCACCCTGCTGTCATCAAGCCACACCTGAAGAACGTACCAGAATACCTCATCCCTCCGACGCTGAGGGGAGTGGCCAACCCAATGTCtggcaggaagaggaggaggagagagaagcccAAACCTGACGGGGTCGTCAAGACGACCTTTAAGGACTTCCGAGGCAAGAACCCCTTGAAGAGTTTCCACTACACCGGGGGGAGGAGCCGAGGGGGCAAGGCTGGCAAATCCTAGGCCTCCATGTTAACGTGCACCAATCAGACTTGCTGTGCACAGCTGGCCTATGACATCACCAGTTTCCAGATCAGTTCAGGTGGAGAGGAGACAAACTGAGGAAGCCATtgtagactactgagatgcagccggAGTGTCCAACATCAGGGTGGTATTCACTAGACcccaaacggaagaaaaccgaCTGAAACAGGGCGGGACTGCCTGAACttttccaataagaaacacttatTTGAGTTTTGCTACGTCTTGaaacggtgtgcactaatgaataccaCCCACGTTTGAGGAACCTCCCAGCAGCACCGTTACTCCTCTGTCAGTGAACCAACATCCTCGTTTCCATTGTCTGGTTAGAAAACCTTCTGTGAACTCAACAGAATGTCCCTTCCCTCAACACAACAGGTGTTTATCACAGTAATGTAACAATGACTGCATTACTCTGAACTTCCACTGAAGCAAATTACCTTCACTAGTGTTCAAAATCCTAATTTGAAGAACGAAAATTGCCATTTAGTTTCAGTAAGTAACTTTCTATTGTTGAATTGGGATCTCGATTGACTTCCGTAACTGAAATGCAACACCTGTTTTACGACACACGATGTACCTTGAAATGTCCATGTGATTTCAGATGGTTACATGTGGGTATTGTTTCTTTGTAACATAATAATTCAGAAAAGTGTAACATTTTATTAAATGGTTTGTGCTCTTTAA

Function

symbol description
ddx56 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

NR:

description
probable ATP-dependent RNA helicase DDX56 isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590604.2 False 2478 mRNA 0.52 14 11046317 11053828
XM_021590605.2 True 2476 mRNA 0.52 14 11046317 11053829

Neighbor

gene id symbol gene type direction distance location
LOC110509609 LOC106562981 coding downstream 28256 11004090 ~ 11018061 (-)
ttll11 LOC106562979 coding downstream 77002 10923070 ~ 10969315 (-)
LOC110509356 NA coding downstream 988548 10051204 ~ 10057769 (-)
lamc3 LOC106562972 coding downstream 1285409 9510367 ~ 9760908 (-)
aif1l LOC106562971 coding downstream 1544898 9461338 ~ 9501419 (-)
LOC110509316 LOC106563014 coding upstream 85593 11139422 ~ 11159002 (-)
LOC118945308 NA coding upstream 136741 11190570 ~ 11193499 (-)
LOC110509613 LOC106562989 coding upstream 161649 11215478 ~ 11218956 (-)
LOC100136736 LOC100136736 coding upstream 179169 11232998 ~ 11236337 (-)
LOC100135966 rps27a coding upstream 188165 11241994 ~ 11244060 (-)
G2151776 LOC106562980 non-coding downstream 44290 11001048 ~ 11002027 (-)
G2151773 NA non-coding downstream 51250 10994862 ~ 10995067 (-)
G2151766 NA non-coding downstream 58803 10987282 ~ 10987514 (-)
G2151742 NA non-coding downstream 108435 10937571 ~ 10937882 (-)
G2151741 NA non-coding downstream 110626 10935461 ~ 10935691 (-)
G2151821 NA non-coding upstream 54933 11108762 ~ 11112463 (-)
G2151827 NA non-coding upstream 60205 11114034 ~ 11114383 (-)
G2151835 NA non-coding upstream 69897 11123726 ~ 11123978 (-)
G2151839 NA non-coding upstream 73773 11127602 ~ 11127803 (-)
G2151802 NA non-coding upstream 78311 11132140 ~ 11132494 (-)
G2151771 NA other downstream 52438 10993166 ~ 10993879 (-)
G2151189 NA other downstream 246999 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1608780 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 2878286 8130783 ~ 8168089 (-)
LOC110509625 LOC106568355 other upstream 402789 11456618 ~ 11525214 (-)
G2152107 NA other upstream 668243 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 887633 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1595347 12649176 ~ 12649495 (-)

Expression


Co-expression Network