LOC110509316 (LOC106563014)


Basic Information

Item Value
gene id LOC110509316
gene name LOC106563014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11139422 ~ 11159002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968104.1
AGCACATAGTCTGAGTCCATCCCAGCCCGCGCGCGGAGAGAAAACACTGACACAAGGTTTAGGCCTACCGTTGACGTCAAACTTAACACGAATAACAGAGAGCCAAGACCATTTCACCGGTAACTCTGATTCCGAGAATTTCGTGTGGATTTGGGAGAGAGAAGTGCGTACACTTGACCAGTGACCCAGGCAATAGAAGAAAGTAACTGCATGACTGCTACGATCAACATTCCAATCACTTTCTTTTGTCTTTTTTTTCGGTCACAGTCAAAATATTTTGGGTGTTATAACCCTCGGCAATTTTTTTTTCAGAGCCGTAAAGAATACTTTTGTTGTTGTGAAacaatcaaaaatatatttttttatcacacTAAATTAGGCAACTGGAAATATCTAAACATATTATTAAATATAATATTTATTATTTTAGCATATAATATCTGGATTCTTACTCTTTCAACATCAAAGCTCTGAGATCCGAAAATGGACTTGCTGTTGAACATGACGGATTACTACCCTTCCGTTAACGCCACTAACGGCTCCGATTTGAACGACACAGAAGACTATAACCAGTTCGTGCAGCCGGTGTGGCAGATCGCTCTTTGGGCAGTCGCCTACTGCAGCATGGTGTGCGTCTCCATGATCGGTAACCTGGTGGTCATCTGGATCATCCTCGCGCACAAACGCATGAGGACCGTGACCAACTACTTCCTGgTGAACCTAGCCTTTGCAGAGGCGTCCATGTCTGCCTTCAACACAGTGATAAACTTTGCCTACAGTGTCCATAACGAGTGGTACTTTGGTCTGGGCTACTGTCGCTTCCATAACTTCTTCCCCATCGCAGCTGTCTTCGCCAGCATATACTCCATGACCGCCATAGCACTGGACAGATACATGGCTATCATCCACCCCTTGAGGCAGAGGTTGTCTTCGACAGAGACCCGTGTAGTGATCGGAGTGATCTGGGTGTTAGCTCTACTGTTGGCCTTCCCCCAGTACTTCTACTCAGCTACAGAACAGCTGCCTGGTAGGACTGTCTGCTACATCCAATGGCCCGACTACACCAACAACACAACCATGGACTTCAAGAAGATGTACTATTTGTCTGTTGTGTTGCTTTACTATTTCCTGCCGCTGTGCATTATGGGATGTGCCTACCTGGTGGTGGGCTTGTCCCTGTGGGCGGGGACAATCCCTGGAGACTCCACCCACCGCTACCGAGAACAGCTCATCGCCAAACGCAAGGTAGTGAAGATGATGATCGTGGTGGTGTGTACGTTTGCGGTGTGCTGGCTGCCGTACCACATCTACTTCCTGCTCCAGCAGTTCCACCCTGACCCCATGCAGCTGTTCGAGTGGCGCTACATCCAGCAGGTCTACCTGGCTGTCATGTGGTTGGCCATGAGCTCCACCATGTACAACCCTATCATCTACTGCTGTCTCAATGACAGGTTCAGAGCAGGCTTTCAGCAGGTGTTCTGTTGGTGTCCGTGTGTTCCTGCAGGCTCCTACGAGGGACTGGAACTCAAGTCCACCAGCTACCTACaaactcagGTGAGTGTGTACCGAGCCAGCCGGACGGAGACCAGTGTGTCGACGGTTCTGCAACCTACTGAGGAGGAGTGCTGTGGGGCCGAGCTGCCAGCTAGCGCCCCTATCAGCCAGACAACTCTGGAGCTCACCTCCATGGACTCACAATCAGCCCCAAAcacccccgacagccctgttttTTTGCGGCCGACGCAACATGGATTAGTAGCTCAATAAACGCCTAACTGGGCTGGTGTCTGAAACATT

Function

NR:

description
substance-P receptor-like

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04222 TACR1; tachykinin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968104.1 True 1797 mRNA 0.49 7 11139422 11159002

Neighbor

gene id symbol gene type direction distance location
ddx56 ddx56 coding downstream 85593 11046317 ~ 11053829 (-)
LOC110509609 LOC106562981 coding downstream 121361 11004090 ~ 11018061 (-)
ttll11 LOC106562979 coding downstream 170107 10923070 ~ 10969315 (-)
LOC110509356 NA coding downstream 1081653 10051204 ~ 10057769 (-)
lamc3 LOC106562972 coding downstream 1378514 9510367 ~ 9760908 (-)
LOC118945308 NA coding upstream 31568 11190570 ~ 11193499 (-)
LOC110509613 LOC106562989 coding upstream 56476 11215478 ~ 11218956 (-)
LOC100136736 LOC100136736 coding upstream 73996 11232998 ~ 11236337 (-)
LOC100135966 rps27a coding upstream 82992 11241994 ~ 11244060 (-)
LOC110509318 LOC106562994 coding upstream 91267 11250269 ~ 11300824 (-)
G2151799 NA non-coding downstream 5726 11132594 ~ 11133696 (-)
G2151802 NA non-coding downstream 6928 11132140 ~ 11132494 (-)
G2151839 NA non-coding downstream 11619 11127602 ~ 11127803 (-)
G2151835 NA non-coding downstream 15444 11123726 ~ 11123978 (-)
G2151827 NA non-coding downstream 25039 11114034 ~ 11114383 (-)
G2151845 NA non-coding upstream 80771 11239773 ~ 11240108 (-)
G2151846 NA non-coding upstream 81210 11240212 ~ 11240547 (-)
G2151894 NA non-coding upstream 86234 11245236 ~ 11252463 (-)
LOC110509360 myo18b non-coding upstream 158597 11315643 ~ 11347641 (-)
LOC110512753 LOC106568375 non-coding upstream 194232 11351194 ~ 11448019 (-)
G2151771 NA other downstream 145543 10993166 ~ 10993879 (-)
G2151189 NA other downstream 340104 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1701885 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 2971391 8130783 ~ 8168089 (-)
LOC110509625 LOC106568355 other upstream 297616 11456618 ~ 11525214 (-)
G2152107 NA other upstream 563070 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 782460 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1490174 12649176 ~ 12649495 (-)

Expression


Co-expression Network