LOC110509317 (LOC106562986)


Basic Information

Item Value
gene id LOC110509317
gene name LOC106562986
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11168585 ~ 11204291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967899.1
TACAACTATCTGGCCCTGCCACAGCACAGTTGGATGCAGCAGAGCCCAGAGTGACATTGAGACCTGCGTCTCCTTTACTGCAATACTCTTCTCAGCTCAACTCCAGCCCTCTGCTCAGgaTGGCACATGATTGGCAGGGAGGTAGAAGTAGGAGTCACCACCGATATGAGGAAGATGTTAAGGagccCCAGCCAGTGTATATTGGTGTTCCGGTAACACACGGTTACAGCAAAAGGAGACGTCGTAAACACCGCTCCCAGCGCGAACAAGAGAAACACCACACACACCGCGGCCAACACgcacaccatgaacacacacgTCACGAACACATACACCATGACAATCACCATGACTACCAGGAACActacaaagaggaggaggagcaggaacaACATGACATATTTGACCCTGACTCCACAGTGTCCCCGGCGGCGGAGAGGCTGCGCTACATCCTGGGTGAAGATGACGACATGCCGACGCCCACTCTGTTTACGGAGATGGACACGCTGCAACACGATGGAGACGAGATGGAGTGGAAAGAGTCTgctaggTGGGTGAAGTttgaggagaaggtggaggagggaggagagaggtggagtaaGCCCCATGTGTCCACCCTGACCCTCCACAGTCTGTTTGAGCTGAGGACCTGCATCCAGACTGGCAGTGTACTGCTGGATCTGGAGGGATACTCCCTGCCACAGATAGtggaTGACATCGTGGACCGCCAGGTGGCAGAcggtctgattggtccagaactGAGGGAGAAGGTCAGCTTTGTGTTGCTACGGAAACATCGCCACCAGCATAAGAAACCCATCCACCTCTCGCTAGccgacatgggaaaatcaaacaaTTCCCCcaccagccGTAGTCCCCAGTCTTTTCATAATGTCAGTCGTAGTAACGTCAGTCGCTTTCCTAGTTCAGCCTCTGGCCTCCATCACTCCACAGAGGACTTACGAGCCAAGTCAGGCAGCCTTGGCCGCCTGCATCCCGCGCAAAGCCGAAGCATGAACGACATTTCAGACAAGCCAAGCACAGACCAGatgAAAAACAAGTTCATGAAGAAGATACCTCGTGATGCAGAGGCATCCAACGTTCTGATTGGAGAAGTGGACTTCCTGGATAAACCATTTGTAGCTTTCGTACGTCTGGCCCAGGCTACCACACTGGGAGGCCTGACCGAGGTCCCCGTAcctaccagGTTTCTGTTTGTCTTGCTGGGTCCTCATGGCAAAGGCAAGTCCTACAACGAGATTGGCCGAGCTATCGCCACGCTCATGGTGGATGACTTGTTCAGTGACGTTGCGTATAAAGCCCGGGACAGGGATGACCTGATCGCGGGGATTGATGAGTTTCTGGATGAGGTCATCGTTCTGCCCCCAGGGGAGTGGGACCCCAAAATACGCATTGAGCCCCCCAAGAAGGTCCCCTCTGCTGACATGAGGAAGTCTGTGCTGAACCTGAACGAGCTAGGCCAGGTGAACGGGACCGGGACAGCTGGGGggccagggggaggagaggacgaggagaTGCCCATCCCCCACGAATTGGGAGAGGAACTGCAATTCACTGGCAGgttCTGTGGAGGCCTGTGGCTGGACATTAAGAGGAAGGTTCCGTGGATCCTTAGTGATTTCTCCCAGGGCTTTCACATCCAGTCCATCTCTGCTGTTCTGTTCATCTACCTGGGCTGCATCACCAACGCCATCACCTTCGGAGGCCTGCTGGGAGACGCCACTGACAactaccagGGTGTGATGGAGAGTTTCCTCGGTACAGCGTTAGCAGGTACAGTGTTCTGTCTGTTAGGAGGTCAGCCTCTCATCATTCTCAGTTCCACTGGACCCATCCTCATCTTCGAGAAACTGCTCTACGAGTTCTGCAaGTCTAACACTATAGACTACATGGAGCTGCGTCTGTGGATTGGTCTACACTCCTGTCTGCAGTGTCTGATCCTGGTCGCCACGGACGCCAGTTACATCATCAAATATATCACCCGCTTCACCGAGGAGGGCTTCTCCAGCCTCATCTCCTTCATCTTCATCTCGGACGCCATCAAGAAGATgGTGGGCTCCTTTAAGTACTACCCCATCAACCGTGTCTTCAAGCCCGACTACGTTACCACATACAGGTGTGAATGTATCGCACCTGACCAGGctgctGCGATGGCTTTTAACGTTTCAGTTCCACTCGCGGACGATAATATGACTGATTTGtataACATAACAGGTCTGGACTGGAGTCAGCTGAGTAAGAAGGAGTGTGTGAAGTATGGCGGCGCCCTGCTGGGGAACGCGTGTAAGTACGTCCCAGACCTGGCCCTCATATCTTTTATCCTGTTCTTCGGCACCTACTCCATGACCGTCTCCCTCAAGAAGTTCAAGACTAGCCGCTACTTCCCCACCAAGTGCCGTTCCCTGGTTGGTGATTTCTCCATCATCATCTCCATCCTGGTGTTCTGTGGGATAGACTACCTGTTAGGCCTGGACACGCCCAAACTGCACGTGCCCACTGAAGTCAagccgACGCGTCCAGACCGTGGCTGGGTGGTGATGCCGTTTGGTAAGAACCCGTGGTGGGTGTATGTGGCCAGCGCCGTCCCTGCTCTCCTGGTCACCATCCTCATCTTCATGGACCAACAGATCAGCGCCGTCATCGTCAACCGCAAAGAGAACAAACTCAAGAAAGGTTGTGGGTACCATCTGGACCTGTTCTGGGTGGGTATTCTGATGGCAGTGTGTTCCTTCCTGGGCCTGCCCTGGTACGTGGCTGCAACTGTCATCTCCATCGCCCACATCGACTCTCTGAAGATGGAGAGTGAGTCCAGCGCCCCAGGAGAGCAGCCCCAGTTCCTGGGAGTCAGggaGCAGAGGTTGACGGGTATTCTGGTGTTTGTCTTAACTGGAGTTTCCATCTTCCTAGCTCCTGTCCTTCAGTACATCCCCATGCCTGTTCTCTACGGTGTCTTCCTCTACATGGGAGTAGCCTCACTCGCAGGAATACagtTCTGGGAGCGTATCAAGCTGTATCTGATGCCAGCCAAGCACCAGCCAGACTTCTCCTTCCTGCGTCACGTTCCTCTGAGGAGAGTCCATCTCTTCACCCTGGTCCAGATTATCTGTCTGGCTGTCCTCTGGACCCTCAAGTCTACCGTAGCGGCCATCATCTTCCCTGTCATGATCCTGGGTCTGATGGTGGTGCGTAAGATGATGGACCTGATGTTCTCTCAACACGACCTGGCCTGGCTGGACGACATCCTGCCGGAGAAAgacaagaagaaggagaaggatggGAAGAAAAAGAAAGACCACAAAAGGACCAAAGCAGCAGAGCCGGAGAGCGACGAGGAGCCCAAgagtcccctccctcctccagtgAAGATACCCATGGACACCATAGATCTGCCTTCAGCACCTGACCCCTCTGTAACCCCACCCACCCAGCCCCCCGTCTGACTgagaAGAATGTTTACACTAGTGTAAATCCAGATGAAAGTCACCGGATGCATCTCCCCCGGCCCTAACGCACACATCGACTGGGGACTACACTGCCAGAATGTCCACACCTATgactactgacacacacacatgtaaaaacacacacgcacgcatacatcCACTTACTACTGCCAGCTAGACTACTGACAACTACTGTATAATCCCACGCACAGCTAA
>XM_036967900.1
CCTCTTAAGCCTCTGGTCCTTCGCTGCTCTGGAGATTTCAGTGGATTTCTGCTTCAGATTAAAGCAGACCAAAACAACTCCACAGGAAAACAATTCCGGAGCAGGACGGAACACACAGAACAGTGTTCAGCCCTTTGGACCGCTGGGTTTCTGACTGACGACACACCATCCCACACACGGCAGAACATGGCTCACTAAACAACGAAGGCCTATTGGATAGCGAAAGGTGTTGAGGCAGAGTTGGCGCAAAGAGAAGAGCATAAAGCTATAAGAAGAGGACGACAACGGAGCAAGGCGTTGAGAGGCGGAACGGGAGAGAGCAGGAAAGTtgtggagaggaaggaaagaaggagttTGTCCACTCTTCTCCTGGTTGTCCCATCAGTGGAGGTCTAGCCTTGACTCCGGTATCTCTAGTTTTCTCCAGAACAAGCCAATTGTCAAACGGGAATACGGTGTCAGGGACTCGTCTGGTACCGCGAGTCTCGTAGGTTGCTACCTCTCTGGGCTGGACGGACATTGACAGAAGCCTCCTGTTGTGTGTTGACCTATCAGCTGGTTggggatatctctctctctgagctgctGGGAGTACAGGTGTATACCGAAAGTCTCTGGTTGTGGTTCCAGTGGTTAGTCATGGAGGACTCTGGTTCCTCCATCACCTCCAGCATGGCCTCTCGCTGGACACTGCCTGGCTCACACAcagTGTCCCCGGCGGCGGAGAGGCTGCGCTACATCCTGGGTGAAGATGACGACATGCCGACGCCCACTCTGTTTACGGAGATGGACACGCTGCAACACGATGGAGACGAGATGGAGTGGAAAGAGTCTgctaggTGGGTGAAGTttgaggagaaggtggaggagggaggagagaggtggagtaaGCCCCATGTGTCCACCCTGACCCTCCACAGTCTGTTTGAGCTGAGGACCTGCATCCAGACTGGCAGTGTACTGCTGGATCTGGAGGGATACTCCCTGCCACAGATAGtggaTGACATCGTGGACCGCCAGGTGGCAGAcggtctgattggtccagaactGAGGGAGAAGGTCAGCTTTGTGTTGCTACGGAAACATCGCCACCAGCATAAGAAACCCATCCACCTCTCGCTAGccgacatgggaaaatcaaacaaTTCCCCcaccagccGTAGTCCCCAGTCTTTTCATAATGTCAGTCGTAGTAACGTCAGTCGCTTTCCTAGTTCAGCCTCTGGCCTCCATCACTCCACAGAGGACTTACGAGCCAAGTCAGGCAGCCTTGGCCGCCTGCATCCCGCGCAAAGCCGAAGCATGAACGACATTTCAGACAAGCCAAGCACAGACCAGatgAAAAACAAGTTCATGAAGAAGATACCTCGTGATGCAGAGGCATCCAACGTTCTGATTGGAGAAGTGGACTTCCTGGATAAACCATTTGTAGCTTTCGTACGTCTGGCCCAGGCTACCACACTGGGAGGCCTGACCGAGGTCCCCGTAcctaccagGTTTCTGTTTGTCTTGCTGGGTCCTCATGGCAAAGGCAAGTCCTACAACGAGATTGGCCGAGCTATCGCCACGCTCATGGTGGATGACTTGTTCAGTGACGTTGCGTATAAAGCCCGGGACAGGGATGACCTGATCGCGGGGATTGATGAGTTTCTGGATGAGGTCATCGTTCTGCCCCCAGGGGAGTGGGACCCCAAAATACGCATTGAGCCCCCCAAGAAGGTCCCCTCTGCTGACATGAGGAAGTCTGTGCTGAACCTGAACGAGCTAGGCCAGGTGAACGGGACCGGGACAGCTGGGGggccagggggaggagaggacgaggagaTGCCCATCCCCCACGAATTGGGAGAGGAACTGCAATTCACTGGCAGgttCTGTGGAGGCCTGTGGCTGGACATTAAGAGGAAGGTTCCGTGGATCCTTAGTGATTTCTCCCAGGGCTTTCACATCCAGTCCATCTCTGCTGTTCTGTTCATCTACCTGGGCTGCATCACCAACGCCATCACCTTCGGAGGCCTGCTGGGAGACGCCACTGACAactaccagGGTGTGATGGAGAGTTTCCTCGGTACAGCGTTAGCAGGTACAGTGTTCTGTCTGTTAGGAGGTCAGCCTCTCATCATTCTCAGTTCCACTGGACCCATCCTCATCTTCGAGAAACTGCTCTACGAGTTCTGCAaGTCTAACACTATAGACTACATGGAGCTGCGTCTGTGGATTGGTCTACACTCCTGTCTGCAGTGTCTGATCCTGGTCGCCACGGACGCCAGTTACATCATCAAATATATCACCCGCTTCACCGAGGAGGGCTTCTCCAGCCTCATCTCCTTCATCTTCATCTCGGACGCCATCAAGAAGATgGTGGGCTCCTTTAAGTACTACCCCATCAACCGTGTCTTCAAGCCCGACTACGTTACCACATACAGGTGTGAATGTATCGCACCTGACCAGGctgctGCGATGGCTTTTAACGTTTCAGTTCCACTCGCGGACGATAATATGACTGATTTGtataACATAACAGGTCTGGACTGGAGTCAGCTGAGTAAGAAGGAGTGTGTGAAGTATGGCGGCGCCCTGCTGGGGAACGCGTGTAAGTACGTCCCAGACCTGGCCCTCATATCTTTTATCCTGTTCTTCGGCACCTACTCCATGACCGTCTCCCTCAAGAAGTTCAAGACTAGCCGCTACTTCCCCACCAAGTGCCGTTCCCTGGTTGGTGATTTCTCCATCATCATCTCCATCCTGGTGTTCTGTGGGATAGACTACCTGTTAGGCCTGGACACGCCCAAACTGCACGTGCCCACTGAAGTCAagccgACGCGTCCAGACCGTGGCTGGGTGGTGATGCCGTTTGGTAAGAACCCGTGGTGGGTGTATGTGGCCAGCGCCGTCCCTGCTCTCCTGGTCACCATCCTCATCTTCATGGACCAACAGATCAGCGCCGTCATCGTCAACCGCAAAGAGAACAAACTCAAGAAAGGTTGTGGGTACCATCTGGACCTGTTCTGGGTGGGTATTCTGATGGCAGTGTGTTCCTTCCTGGGCCTGCCCTGGTACGTGGCTGCAACTGTCATCTCCATCGCCCACATCGACTCTCTGAAGATGGAGAGTGAGTCCAGCGCCCCAGGAGAGCAGCCCCAGTTCCTGGGAGTCAGggaGCAGAGGTTGACGGGTATTCTGGTGTTTGTCTTAACTGGAGTTTCCATCTTCCTAGCTCCTGTCCTTCAGTACATCCCCATGCCTGTTCTCTACGGTGTCTTCCTCTACATGGGAGTAGCCTCACTCGCAGGAATACagtTCTGGGAGCGTATCAAGCTGTATCTGATGCCAGCCAAGCACCAGCCAGACTTCTCCTTCCTGCGTCACGTTCCTCTGAGGAGAGTCCATCTCTTCACCCTGGTCCAGATTATCTGTCTGGCTGTCCTCTGGACCCTCAAGTCTACCGTAGCGGCCATCATCTTCCCTGTCATGATCCTGGGTCTGATGGTGGTGCGTAAGATGATGGACCTGATGTTCTCTCAACACGACCTGGCCTGGCTGGACGACATCCTGCCGGAGAAAgacaagaagaaggagaaggatggGAAGAAAAAGAAAGACCACAAAAGGACCAAAGCAGCAGAGCCGGAGAGCGACGAGGAGCCCAAgagtcccctccctcctccagtgAAGATACCCATGGACACCATAGATCTGCCTTCAGCACCTGACCCCTCTGTAACCCCACCCACCCAGCCCCCCGTCTGACTgagaAGAATGTTTACACTAGTGTAAATCCAGATGAAAGTCACCGGATGCATCTCCCCCGGCCCTAACGCACACATCGACTGGGGACTACACTGCCAGAATGTCCACACCTATgactactgacacacacacatgtaaaaacacacacgcacgcatacatcCACTTACTACTGCCAGCTAGACTACTGACAACTACTGTATAATCCCACGCACAGCTAA

Function

NR:

description
PREDICTED: electrogenic sodium bicarbonate cotransporter 4-like isoform X8

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967899.1 False 3680 mRNA 0.54 27 11168585 11204291
XM_036967900.1 True 3969 mRNA 0.54 25 11174392 11204291

Neighbor

gene id symbol gene type direction distance location
LOC100136324 sr-bi coding upstream 56122 11076465 ~ 11112463 (+)
LOC110509611 LOC106562983 coding upstream 123911 11025749 ~ 11044674 (+)
LOC110509610 LOC106562982 coding upstream 145914 11021070 ~ 11022671 (+)
LOC110509607 LOC106562980 coding upstream 165355 10974442 ~ 11003230 (+)
LOC110509315 LOC106562976 coding upstream 262420 10701054 ~ 10906165 (+)
LOC110509615 LOC106562990 coding downstream 2705 11206996 ~ 11215361 (+)
LOC118945263 NA coding downstream 20785 11225076 ~ 11228621 (+)
LOC110509616 LOC106563016 coding downstream 106166 11310457 ~ 11313974 (+)
trnaa-ugc-223 NA coding downstream 135008 11339299 ~ 11339370 (+)
LOC110509623 crybb1 coding downstream 242103 11446394 ~ 11458975 (+)
G2151424 NA non-coding upstream 23827 11140754 ~ 11144758 (+)
G2151397 NA non-coding upstream 28922 11135910 ~ 11139663 (+)
G2151421 NA non-coding upstream 41021 11127263 ~ 11127564 (+)
G2151417 NA non-coding upstream 45374 11122943 ~ 11123211 (+)
G2151415 NA non-coding upstream 49035 11119349 ~ 11119550 (+)
G2151466 NA non-coding downstream 26721 11231012 ~ 11231219 (+)
G2151468 NA non-coding downstream 30185 11234476 ~ 11234704 (+)
G2151469 NA non-coding downstream 30711 11235002 ~ 11235207 (+)
G2151436 NA non-coding downstream 35482 11239773 ~ 11240666 (+)
G2151430 ubb non-coding downstream 37703 11241994 ~ 11243137 (+)
G2150729 NA other upstream 706365 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 859506 10064167 ~ 10309768 (+)
G2149183 NA other upstream 1794073 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2136290 8957803 ~ 9032295 (+)
G2146821 NA other upstream 3168095 8000129 ~ 8000490 (+)
G2151555 NA other downstream 156094 11359557 ~ 11432252 (+)
G2152150 NA other downstream 559933 11764224 ~ 11766351 (+)
G2152639 NA other downstream 1096501 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1555589 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2463998 13668289 ~ 13669170 (+)

Expression


Co-expression Network