LOC110509615 (LOC106562990)


Basic Information

Item Value
gene id LOC110509615
gene name LOC106562990
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11206996 ~ 11215361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590612.2
AAATCGTCCCTATTTCCGGTTTGTGATCCAAACACTTCTCTGTTCTGAGCCGAAACAACTGTAGCTAGACGGATCGATAGACAACAACCATCATGGGTGAAATGGCAGAACTCACTGATAAATTTAGCTCATTCACAATGACTCAATTAAACGAGTTGCTTGAAGACGATGAAAAACTAAATGATATTGTCAAAGAAATGGACGAGATGCGTGAGGTGCAGCAGGTGAAGGAGCTGACCCTAGGCAGTAACATCAGCCTGGCTGAACAGAACCTCCAGCTGCAGCCTAGACTGGACCTGCAGAAGAACCAGCTCACCTCACGCTACCGCCACCTACAGGAGCTCTACGACAACTACCAGCTACGCAAGTCCACACTCGaccctgGTACAGAGAACAGTTCTCTGGACATTCTGCTGGCTCTGCTGCAAGCGGAGGGAGCCAAGATAGAGGAAGAGACTGAGAACATGGCAGACTCGTTCCTGGATGGAGAGCTGCCTCTCGACTGCTTTATCGACGACTACCAGCAGAGGCGCCATCTCGCTCACCTGCGCCGCGTCAAGATTGACAAACTCCGAGAGCTGGCGCTGAAGGGTCTCACTCGGCCCCCCCAGATTCCTTCCCAGCCCAGCCGACCCCAGGACCTCCCCTCTACCAATGGGGCCCCCTCCCCCCAATCCACACGAgctgcctcttctccctcccctcagcACAGCGGCCTACCCTATCCAGTCGCCCCCTATCCCCCAATGCCTTTCCCCAGCTGCCCTTACATGCCCCAGCCCTACCTTCAAACCTCCCAGCAACACCCGCCCCCCAGGACTGGCTTCATCATGCAGTGAGGCGGTGTCCGTCTCCATAGAAACGCCATGGATGACCTTCCCTACCTTTTGACCTGTGGCACACTGAAGGGTTGACCCAATGAGGGTTGGTGACCTAACCAATTACAGCCCCTCTGTCAGTAACACTGAGGGAAACGTCCTCTGACCAGCTTCTCAGAGGCTCTCCGCTCTCAGACGGACTCTGTCCAGTGACTACAGCCTGGACGGTACATTAGGGGTTGGTTCTCTTTTAGTTTTATTCCAAGACTAACTTTCTGATTTAATCTTCTGAACACATAGCTAAGCCTAACCATCTGTCTGGTAGATATGGTAACTTGCAGTATAGATGTTTTTGTAAGCTAAAGGTCCCTCTCTGAAGGGTGTGTGCGCACACAGAGGTTGGTAATCAACATAGTTAGCTCAAAAGTTCCTAGTCCATCAACAATGAACAGAACTATACAAATAGCATAGTTTCATTTGAATTCAAAATGTACTGCATGGCATCGTAAATATTTTAAAATCAACTAATCGATGAGTCTTTCAGTTTCTTTCCAGCTGGTTGGGAGGATGTGAGTTCACGTGCAAAAAGTTCATAGAAACAAGACTAGGAATGTACTGTGTTCTTAAGGAGAAACATTTGGGGTGGATATGAATCTTACACACTTGGCTAGTTTTGTATACTGGTATAAGGAGTTCTCCCAACTGGAATTGATAATTGTAACATTTTTAGAGCAATAACCATGCAGCTTAAGTTGATGTCAGTTTGTCCAGGGTAGGGAGTGTTTGTATGCCAAAGTAATTGTTTCCCTGATGGGCTGGGTGCTCGCCAGCCAGGCTACAGCACTCTTGGACTAGCATCAGTGATTGATCCTATTCAATTATTTTAATGACTAATTATATGCACACCTAGCTGTAATCTGTACAGTGGGTTCTCAGTTGCACTTACAGAACAACTCACCTCAAGTAGGGAAAGCATATAGGGGTTCAAATATTAACTATTTGaatattaaccccccccccccccccagtatggTACCGGTTTTATACTCCATTAGGAACTAACTAATGTAATGCTAGACTAGCAGACTGGTTGACATGCTCACTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590612.2 True 1925 mRNA 0.48 4 11206996 11215361

Neighbor

gene id symbol gene type direction distance location
LOC110509317 LOC106562986 coding upstream 2705 11168585 ~ 11204291 (+)
LOC100136324 sr-bi coding upstream 94533 11076465 ~ 11112463 (+)
LOC110509611 LOC106562983 coding upstream 162322 11025749 ~ 11044674 (+)
LOC110509610 LOC106562982 coding upstream 184325 11021070 ~ 11022671 (+)
LOC110509607 LOC106562980 coding upstream 203766 10974442 ~ 11003230 (+)
LOC118945263 NA coding downstream 9715 11225076 ~ 11228621 (+)
LOC110509616 LOC106563016 coding downstream 95096 11310457 ~ 11313974 (+)
trnaa-ugc-223 NA coding downstream 123938 11339299 ~ 11339370 (+)
LOC110509623 crybb1 coding downstream 231033 11446394 ~ 11458975 (+)
LOC110509620 LOC106563087 coding downstream 244564 11459925 ~ 11464582 (+)
G2151424 NA non-coding upstream 62238 11140754 ~ 11144758 (+)
G2151397 NA non-coding upstream 67333 11135910 ~ 11139663 (+)
G2151421 NA non-coding upstream 79432 11127263 ~ 11127564 (+)
G2151417 NA non-coding upstream 83785 11122943 ~ 11123211 (+)
G2151415 NA non-coding upstream 87446 11119349 ~ 11119550 (+)
G2151466 NA non-coding downstream 15651 11231012 ~ 11231219 (+)
G2151468 NA non-coding downstream 19115 11234476 ~ 11234704 (+)
G2151469 NA non-coding downstream 19641 11235002 ~ 11235207 (+)
G2151436 NA non-coding downstream 24412 11239773 ~ 11240666 (+)
G2151430 ubb non-coding downstream 26633 11241994 ~ 11243137 (+)
G2150729 NA other upstream 744776 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 897917 10064167 ~ 10309768 (+)
G2149183 NA other upstream 1832484 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2174701 8957803 ~ 9032295 (+)
G2146821 NA other upstream 3206506 8000129 ~ 8000490 (+)
G2151555 NA other downstream 145024 11359557 ~ 11432252 (+)
G2152150 NA other downstream 548863 11764224 ~ 11766351 (+)
G2152639 NA other downstream 1085431 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1544519 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2452928 13668289 ~ 13669170 (+)

Expression


Co-expression Network