LOC110509613 (LOC106562989)


Basic Information

Item Value
gene id LOC110509613
gene name LOC106562989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11215478 ~ 11218956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590611.2
aGTATTTTTCCGAGTTCACGCGGCACGAGTGTCCGAGTTGGAAGACCGTTCAAAtcgatttttcccagtcggagctcgttcatttcagagttcccagtacTGAACGCGGAATATGTTTTGTCTGTTCATTCGCGGGGCTCGGTGAAGACGTTAGGCGTAACGAAATGCTTCGTACGTTGCATGATGTGAACGGAGCAcgtcacacagacagagagacagacgcaaCCAATCGGGTTGAAACAAAGGCGGGGCTCATTCTGGGGTATATATCATTGTGAATCGACGTGTATTTTCGAAACAGTTGGGCAGTTGACCGTTTGAAATTATATAGTCAAGACCGACGTTTCTCAGCAAGCCATAATAACTGCAGGTCATACTTTATAGAATCGAAATGCGTGAGTGCATCTCTATCCACGTTGGTCAGGCCGGTGTTCAGATCGGGAATGCCTGCTGGGAACTGTACTGCTTGGAACATGGGATCCAGCCCGATGGGCAGATGCCCAGTGACAAAACCATCGGCGGAGGGAATGACTCATGCAACACCTTCTTCAGCGAGACCGGAGCGGGAAAACATGTCCCCCGTGCTGTGTTTGTGGATCTCGAACCAACTGTTGTTGATGAGGTTCGCACCGGGACATACCGTCAGTTGTTCCATCCCGAGCAGCTCATCACCGGTAAAGAGGATGCCGCCAACAACTTCGCCCGAGGCCACTACACAATTGGCAAGGAGATCGTCGACCTGGTGCTGGACCGAGTTCGCAAACTGTCGGACCAGTGCACTGGGCTTCAGGGCTTCCTGATCTTCCACAGCTTTGGTGGTGGAACCGGCTCCGGCTTTGCTTCTCTGCTCATGGAGAGACTGTCAGTGGACTATGGCAAAAAATCCAAACTGGAATTTGCCATTTACCCTTCACCTCAGGTGTCCACAGCAGTGGTGGAGCCCTACAACTCTATCCTGACCACCCACACCACCCTGGAACACTCAGACTGTGCCTTCATGGTCGACAATGAGGCCATTTATGACATTTGCAGTCGGAACCTGGACATTGAGCGCCCCACTTATACTAACCTCAACAGGCTCATTGGCCAGATCGTCTCCTCCATCACAGCTTCTCTGCGTTTCGATGGAGCCCTCAACGTGGACCTGACTGAGTTCCAGACCAACCTGGTGCCATACCCCCGTATCCACTTCCCCCTGGTCACCTACGCACCCATCATCTCTGCTGAGAAGGCCTACCACGAGATGCTTTCTGTGGCAGAGATCACCAACGCTTGCTTCGAGCCAGCcaaccagatggtgaagtgtgaccCTCGCCATGGCAAGTACATGGCCTGCTGCATGCTGTATCGTGGGGATGTGGTGCCTAAGGATGTCAATGCTGCCATCGCCACCATCAAGACCAAACGCACTATCCAGTTTGTTGACTGGTGCCCCACCGGCTTCAAGGTAGGCATCAACTACCAGCCACCCACGGTGGTGCCAGGTGGAGATCTTGCCAAGGTCCAGAGAGCCGTTTGCATGTTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGGCTCGACCACAAGTTTGATCTGATGTACGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGAGAGGGTATGGAGGAGGGGGAGTTCTCTGAGGCCAGAGAAGATCTGGCTGCCCTGGAGAAGGACTACGAGGAAGTGGGAGTGGATTCGGTGGAGGGAGAggctgaggaaggagaggagtaCTAAACCCTGACCTACTTACCAATGTTTTACTGTCGAGTTTAATAAAAGTTCTTTGGTCTATT

Function

NR:

description
tubulin alpha chain, testis-specific-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590611.2 True 1803 mRNA 0.53 6 11215478 11218956

Neighbor

gene id symbol gene type direction distance location
LOC118945308 NA coding downstream 21979 11190570 ~ 11193499 (-)
LOC110509316 LOC106563014 coding downstream 56476 11139422 ~ 11159002 (-)
ddx56 ddx56 coding downstream 161649 11046317 ~ 11053829 (-)
LOC110509609 LOC106562981 coding downstream 197417 11004090 ~ 11018061 (-)
ttll11 LOC106562979 coding downstream 246163 10923070 ~ 10969315 (-)
LOC100136736 LOC100136736 coding upstream 14042 11232998 ~ 11236337 (-)
LOC100135966 rps27a coding upstream 23038 11241994 ~ 11244060 (-)
LOC110509318 LOC106562994 coding upstream 31313 11250269 ~ 11300824 (-)
LOC110509360 myo18b coding upstream 96687 11315643 ~ 11347641 (-)
LOC110509319 LOC106562995 coding upstream 110993 11329949 ~ 11333529 (-)
G2151799 NA non-coding downstream 81782 11132594 ~ 11133696 (-)
G2151802 NA non-coding downstream 82984 11132140 ~ 11132494 (-)
G2151839 NA non-coding downstream 87675 11127602 ~ 11127803 (-)
G2151835 NA non-coding downstream 91500 11123726 ~ 11123978 (-)
G2151827 NA non-coding downstream 101095 11114034 ~ 11114383 (-)
G2151845 NA non-coding upstream 20817 11239773 ~ 11240108 (-)
G2151846 NA non-coding upstream 21256 11240212 ~ 11240547 (-)
G2151894 NA non-coding upstream 26280 11245236 ~ 11252463 (-)
LOC110512753 LOC106568375 non-coding upstream 134278 11351194 ~ 11448019 (-)
G2151771 NA other downstream 221599 10993166 ~ 10993879 (-)
G2151189 NA other downstream 416160 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1777941 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 3047447 8130783 ~ 8168089 (-)
LOC110509625 LOC106568355 other upstream 237662 11456618 ~ 11525214 (-)
G2152107 NA other upstream 503116 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 722506 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1430220 12649176 ~ 12649495 (-)

Expression


Co-expression Network