LOC100136736 (LOC100136736)


Basic Information

Item Value
gene id LOC100136736
gene name LOC100136736
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11232998 ~ 11236337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124691.1
tgtcaGTTAACCGTTGGAAGTTGTAGAGCCAAGGTAGCCTAGCTTAGCCAACTGTCGAACGCATTTTTGTTAAACATTAATTAGCTACAGGTCTTACTTATAATCAACATGCGTGAGTGCATCTCTATCCACGTTGGTCAGGCCGGTGTTCAGATCGGGAATGCCTGCTGGGAACTGTACTGCTTGGAACATGGGATCCAGCCCGATGGGCAGATGCCCAGTGACAAAACCATCGGCGGGGGGGATGACTCCTTCAACACTTTCTTCAGCGAGACCGGAGCGGGAAAACATGTCCCCCGTGCTGTGTTTGTGGATCTCGAACCAACTGTTGTTGATGAGGTTCGCACCGGGACATACCGTCAGTTGTTCCACCCGGAGCAGCTCATCACCGGTAAAGAGGATGCCGCCAACAACTATGCTCGTGGCCACTACACCATTGGCAAGGAGATCGTCGACCTGGTGCTGGACCGAGTTCGCAAGCTGtcggACCAGTGCACTGGGCTTCAGGGCTTCCTGATCTTCCACAGCTTTGGTGGTGGAACCGGCTCAGGTTTTGCCTCTCTGCTCATGGAGAGACTGTCTGTGGACTATGGCAAGAAGTCCAAACTGGAGTTTGCCATATACCCCGCCCCTCAGGTGTCCACAGCAGTGGTGGAGCCCTACAACTCTATCCTGACCACCCACACCACCCTGGAACACTCAGACTGTGCCTTCATGGTCGACAACGAGGCCATCTACGACATCTGCCGTCGGAACCTGGACATCGAGCGCCCCACTTATACTAACCTCAACAGGCTCATTGGCCAGATCGTCTCCTCCATCACAGCCTCGCTGCGTTTCGATGGAGCCCTCAATGTGGACCTCACTGAGTTCCAGACCAACCTGGTGCCATACCCCCGTATCCACTTCCCCCTGGTCACCTACGCACCTGTCATCTCTGCTGAGAAGGCCTACCACGAGATGCTTTCTGTGGCAGAGATCACCAACGCTTGCTTCGAGCCAGCcaaccagatggtgaagtgtgaccCTCGCCATGGCAAGTACATGGCCTGCTGCATGCTGTATCGTGGGGATGTGGTGCCTAAGGATGTCAATGCTGCCATCGCCACCATCAAGACCAAACGCACTATCCAGTTTGTTGACTGGTGCCCCACCGGCTTCAAGGTAGGCATCAACTACCAGCCACCCACGGTGGTGCCAGGTGGAGATCTTGCCAAGGTCCAGAGAGCCGTTTGCATGTTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGGCTCGACCACAAGTTTGATCTGATGTACGCCAAGCGTGCCTTTGTACACTGGTATGTGGGAGAGGGTATGGAGGAGGGGGAGTTCTCTGAGGCCAGAGAAGATCTGGCTGCCCTGGAGAAGGACTACGAGGAAGTGGGAGTGGATTCGGTGGAGGGAGAggctgaggaaggagaggagtaCTGAATCCTGACCTGATTGAAAAATGTTTTACTGTTGATTGGTAATTTTAATAAAAGTTCTGTTTTC

Function

NR:

description
tubulin alpha chain, testis-specific

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124691.1 True 1524 mRNA 0.54 6 11232998 11236337

Neighbor

gene id symbol gene type direction distance location
LOC110509613 LOC106562989 coding downstream 14042 11215478 ~ 11218956 (-)
LOC118945308 NA coding downstream 39499 11190570 ~ 11193499 (-)
LOC110509316 LOC106563014 coding downstream 73996 11139422 ~ 11159002 (-)
ddx56 ddx56 coding downstream 179169 11046317 ~ 11053829 (-)
LOC110509609 LOC106562981 coding downstream 214937 11004090 ~ 11018061 (-)
LOC100135966 rps27a coding upstream 5657 11241994 ~ 11244060 (-)
LOC110509318 LOC106562994 coding upstream 13932 11250269 ~ 11300824 (-)
LOC110509360 myo18b coding upstream 79306 11315643 ~ 11347641 (-)
LOC110509319 LOC106562995 coding upstream 93612 11329949 ~ 11333529 (-)
LOC110512753 LOC106568375 coding upstream 114857 11351194 ~ 11448019 (-)
G2151799 NA non-coding downstream 99302 11132594 ~ 11133696 (-)
G2151802 NA non-coding downstream 100504 11132140 ~ 11132494 (-)
G2151839 NA non-coding downstream 105195 11127602 ~ 11127803 (-)
G2151835 NA non-coding downstream 109020 11123726 ~ 11123978 (-)
G2151827 NA non-coding downstream 118615 11114034 ~ 11114383 (-)
G2151845 NA non-coding upstream 3436 11239773 ~ 11240108 (-)
G2151846 NA non-coding upstream 3875 11240212 ~ 11240547 (-)
G2151894 NA non-coding upstream 8899 11245236 ~ 11252463 (-)
G2151771 NA other downstream 239119 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 263697 10923070 ~ 10969315 (-)
G2151189 NA other downstream 433680 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1795461 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 3064967 8130783 ~ 8168089 (-)
LOC110509625 LOC106568355 other upstream 220281 11456618 ~ 11525214 (-)
G2152107 NA other upstream 485735 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 705125 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1412839 12649176 ~ 12649495 (-)

Expression


Co-expression Network