LOC100135966 (rps27a)


Basic Information

Item Value
gene id LOC100135966
gene name rps27a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11241994 ~ 11244060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124306.1
CAGAAGCAGAAGCTAGAATATTCAAGAACGCCGGTGGCTCATTTATTCTTGTCAAGATGCAGATCTTTGTGAAGACACTTACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGTGGTATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGTATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGTATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACGCTCTCTGACTACAACATCCAGAAGGAGTCCACTCTTCACCTGGTCCTGCGTCTCCGTGGTGGCAACTAAGCAGCTTCTCCTCTGCTCTTAACGATGTCTCATCTTAACCCCCATCTTAATCTCAATCCCACCCATTGACCGCTTCTTCCCTCTAACCCCACCCTCTGACTTTCCCCTCTCCCCTAACCTCACATCCCAGCTCTTCATTCCTTTAAATTTCAATAAAGTTCAAGCATTCCTGA
>TU2460556
TAAGGTATAAATACCACAGCCCTTTGTTTGCGAGAACAGAGTCGTTTCCTGAAGACAGAAGCAGAAGCTAGAATATTCAAGAACGCCGGTGGCTCATTTATTCTTGTCAAGATGCAGATCTTTGTGAAGACACTTACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACGCTCTCTGACTACAACATCCAGAAGGAGTCCACTCTTCACCTGGTCCTGCGTCTCCGTGGTGGCAACTAAGCAGCTTCTCCTCTGCTCTTAACGATGTCTCATCTTAACCCCCATCTTAATCTCAATCCCACCCATTGACCGCTTCTTCCCTCTAACCCCACCCTCTGACTTTCCCCTCTCCCCTAACCTCACATCCCAGCTCTTCATTCCTTTAAATTTCAATAAAGTTCAAGCATTCCTGA

Function

symbol description
rps27a Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124306.1 False 1147 mRNA 0.54 2 11241994 11244005
TU2460556 True 518 TUCP 0.50 3 11241994 11244060

Neighbor

gene id symbol gene type direction distance location
LOC100136736 LOC100136736 coding downstream 5657 11232998 ~ 11236337 (-)
LOC110509613 LOC106562989 coding downstream 23038 11215478 ~ 11218956 (-)
LOC118945308 NA coding downstream 48495 11190570 ~ 11193499 (-)
LOC110509316 LOC106563014 coding downstream 82992 11139422 ~ 11159002 (-)
ddx56 ddx56 coding downstream 188165 11046317 ~ 11053829 (-)
LOC110509318 LOC106562994 coding upstream 6264 11250269 ~ 11300824 (-)
LOC110509360 myo18b coding upstream 71638 11315643 ~ 11347641 (-)
LOC110509319 LOC106562995 coding upstream 85944 11329949 ~ 11333529 (-)
LOC110512753 LOC106568375 coding upstream 107189 11351194 ~ 11448019 (-)
LOC110509320 cryba4 coding upstream 204969 11448974 ~ 11452011 (-)
G2151846 NA non-coding downstream 1447 11240212 ~ 11240547 (-)
G2151845 NA non-coding downstream 1886 11239773 ~ 11240108 (-)
G2151799 NA non-coding downstream 108298 11132594 ~ 11133696 (-)
G2151802 NA non-coding downstream 109500 11132140 ~ 11132494 (-)
G2151839 NA non-coding downstream 114191 11127602 ~ 11127803 (-)
G2151894 NA non-coding upstream 1231 11245236 ~ 11252463 (-)
G2151944 NA non-coding upstream 112755 11356760 ~ 11357715 (-)
G2151952 NA non-coding upstream 181882 11425887 ~ 11427513 (-)
G2151771 NA other downstream 248115 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 272693 10923070 ~ 10969315 (-)
G2151189 NA other downstream 442676 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1804457 9365212 ~ 9437537 (-)
LOC110509586 LOC106562956 other downstream 3073963 8130783 ~ 8168089 (-)
LOC110509625 LOC106568355 other upstream 212613 11456618 ~ 11525214 (-)
G2152107 NA other upstream 478067 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 697457 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1405171 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1843448 13087453 ~ 13091356 (-)

Expression


Co-expression Network