LOC110509318 (LOC106562994)


Basic Information

Item Value
gene id LOC110509318
gene name LOC106562994
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11250269 ~ 11300824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967953.1
cgggaggagagagaaagagagagagatcaggacaGAAAGAGCAGAAGAGGCAGAAGAGACGTGGCACATTGCGAGGTTCAGGCGAAGGGAGGCAAGACATGCGGACGGCAGAgaaatcaccaccaccacactgtgCGCTGACAGAGGTGTAGAAAAACAACATCTAGGAGATCGCTGTGCAGACCGGCTGTCGAACACCAACCTATTCTCCGCGTGCATTCCGTTAGCAGGTCTATCTGGACAGAACGGCTCTGTCTGGTTGTGTGAAGCCATGCCACCGGGCCATTACCGAATCGGTGCCCTATCAGCGctactctgtgtctgtgtgatttggACCGGGTTAGCAGCGGAAACACAAGGTGAAGTTGACTCCATACAAcgctctcactccccctctcaaGCCGTAGGGGACACAGACATAGACTCATCCCGAGGGAGAAGTTCCGTGGTTGGGTTAGTGCCCAGGGCGGGGATGGGTGCCACTGGTGATCTGCTCGAGTCATTCCTGGCCCAGAAGGATCGTCTCCTCTACCAGACAGGGGGGGTGGTCCTGCCCTCTGCTCAGCCCCAAGACCTGCTGCCTCTCCTGGGCAGAGGACTGAGCGTGAGGGGCCTGTCTGGTGGTCTCTCTATGGATCAGCAGGGTCTGTTGAAGAGGATAGGATCCCTAGTCTCACAGCCCCACGACAGTGGACCCCTCCTCCCGTCACAGCCCTCCCAATCTGACAAcaaccccatcccctcctcctcccagcccgggacacacacatccacacacacaccgctggGACAGCGAGATGAGGTCACCGCTATCATCATGGCGACCATGGCTGCAGACACACCTTCACCAGGTTTATCTGTGTCCGGCTGTATGGTGAATTTCTCCGACCCAGAGGGATACATAGACTCTTCTGACGACCCCCCTCTACCAGATGGAACATTCCTACACTGTACATACACCGTCACTGTGTACACAGGCTATGGAGTCGAGCTACAGgtGAAGAGTGTGAATCTGTCAGAGGGAGAGCAGCTGTCAATCAGAGGGGTGGATGAGGGTGGGGCCTTGCTAGTTCTGGCCAATCACACGCTTCTGGTGGAGGGTCAGGTGATCCGCAGTCCGACCAATACCATCTCAGTATACTACCGCTCCTTGCCTGAGGGGGGCATGGGCATGTTCCAGCTGCACTACCAGATATTCCGTCTGAGCTGTGCCCTGCCGAGGAGGCCTCATTTTGGGGAGGTGTCAGTGCTGGACCTGCTGCCAGGGGGCACTGCCCGCTTCCACTGCCATATGGGCTATCACCTGCAGGGGGCAGTGGCGCTCACCTGCCTCAATGCATCTCTGCCTGTCTGGAGCAGCAAGGAGCCCAGCTgtagagcACTATGTGGGGGATCAGTGAAGAACGCTACAGTAGGGAGGgtcctatctccctctccccgCCTGGGGCCCGACGCCACCCAGGACCGTTCCTGCTCCTGGTCCATGGAGGCCCCCACAGCACAGAGACTACACCTGCACCTGGAGAGACTGGCCCTTGGACCCACCgaaagACTTGTGTTATGGAGCGGTCTGGACGCTGGGTCTGTGGTGCTGTTTGACTCGGGCCGGGGTGGTCCAATACCGTTTGAAGGGGTGATCAGTGAGGGTCCAGCAGTCAGGGTACAGTTCATCACTGACCAACCTAACCACAATACAGGCTTCAACATCCGCTATGAGGcgtTTAAGCGTGGCCATTGTTATGAGCCCTACCTGCAGAATGGTAACTTCAGCACCACTGACCAGGCCTACGGTGTTGGCGCTGTGGTGCAGTTCAGCTGTGATACTGGTCACTCTCTGGAGCAGGGGCCGCCAGTCATAGAGTGTATCAATGCCAGAGACCCCTACTGGAACGACACGGAACCACTCtgcaaagcCCTGTGTGGGGGAGACCTAGCAGGTCCTGGGGGTGTGATCCTGTCTCCCAACTGGCCAGAGTGgtacggagagggagaggactgcaGCTGGAGGATACATGTAGGGGAGGACAAATGCGTGCTGCTCGACGTACAGctTCTGAACCTGAGTGACAGTGACATGTTGACCATCCTGGACGGTGATGAAGTCACCACCCATATCCTGGGCCAGTACGTGGGCGGAGCCGGGCCCTTCAAGATACAGTCCACGACCCCTGACCTCACCGTGACCTTCCACTCCGACCCTGCCGGCCTCGTCTTCGGCAAGGGAGAGGGCTTCATCATCAACTACATGGAGGTCTCCCGTAACGACTCGTGTCCGGACCTGCCGGAGATCCAGAATGGCTGGAAGACCACGTCCCATACTGCCCTGGTGCGGGGCGCTCGCATCACCTACCAGTGTGACCCAGGCTACGACCTGGTTGGACGAGAGACTCTTACCTGTCAGCTAGACCTCACCTGGAGCACACAGCCCCCCTTCTGCGAGAAGAtAATGTATTGTTCAGATCCGGGTCACGTGGAACACTCTACCAGGTCACTGTCCGACCCGAAACTCCTGGTGGGGACCACCATCCAGTACAGCTGCTACCCCGGCTTCATCCTGCAGGGCGGTGCCACACTCACCTGCTACGGACGAGAGCCTGGCACCCCTGTCTGGACGTCCAAACTACCCCACTGTGTCTCGGAGGAATCTGTTTCCTGTGAGAACCCTGGTCTCCCTGACAACGGATACCAGATCCTGTCCAAGCGCCTCTACCTGCCCAGCGAGTCGCTCACCTTCATCTGTTACCAAGGCTTCGAGCTCATCGGCGAGGTCGCCATTAAGTGTATCCTGGGGAACCCGTCGTTTTGGAGCGGACCACTGCCACTGTGCAGGGCCAACCATGACTGCTTTGGCAACCATGCTTTGGAagtTGTTGAGGCAGCAGCCGGGTCAGGTCTGGACGGTGGCAACATGGCATTGGCCATCTTCATCCTTGTACTTCTGCTCTCCGTGCTGCTGGGAGGAGCCTACGTCTACATCACACGGTGTCGCTACCACTCCAACCTGCGGCTGCCGCTCATCTACCCACACCCTTACAGTCAGATCACCGTGGAGAGCGAGTTTGACAACCCACTCTacgagacaggaggggacaACCGTGAATATGAGGTATCAATATGAGGACCATCTCCACTGTTGGAATCCCAAAATGAAGCATCCACCCCACCAACCCATCCCCctacccttcctcctcctccttagaCCGGCCCAGGTGGAAGTTATGTAAATACAGACTGACTATAGTCTTGCCCCTTTCCCCCATGATCCCATGACCCCCGTGACCCTGTCCTCCAATCAcaaagagaggaatgagagagagggaagatgagtCAGAGAGGcaatgggggagaggagaaaggggaggacagGAGATACTGTGAAAGGGGGCTGCAGGATTTTGGGGGGATAAAGAGACTGAAGCACTTGTGACAAGTTGTCCATTTACTCGTGTCTACCATTAGAGAACAAatacagagacagggagggaatatgtgaaggagagagagagtgggagagaggtgagggagagaagtGGAGTGAGAAAGAGGAGTGAAAGATAGAAGGAAGTGACCTCACAGGACGTGAGGTCATTATCTCTTCCTGGTTGTGCCCCATCTTCCTGCCTGCAGTCATTTCTAAGGCCTGGTTTTAGACCTGTTTTATAGTACTGGTTTTACCGTAGTAACTGACCTGTACAATCTCAACCAACCCATAACACCAGAAGAGGCCACCATAAGATgtatttattttgatgtatatGTGACGTTTTATGCGGATTAATGAATGTACATTTTCATTTTGAGAATACAAAAAGAAAAGACGTACCATGCTACTGACTTCCCTAAATAAATGGTCCAAAAAAAGTATGAAAGAATCTTTCTATCAAAATAAAACACACGCACTTGTC
>XM_036967954.1
cgggaggagagagaaagagagagagatcaggacaGAAAGAGCAGAAGAGGCAGAAGAGACGTGGCACATTGCGAGGTTCAGGCGAAGGGAGGCAAGACATGCGGACGGCAGAgaaatcaccaccaccacactgtgCGCTGACAGAGGTGTAGAAAAACAACATCTAGGAGATCGCTGTGCAGACCGGCTGTCGAACACCAACCTATTCTCCGCGTGCATTCCGTTAGCAGGTCTATCTGGACAGAACGGCTCTGTCTGGTTGTGTGAAGCCATGCCACCGGGCCATTACCGAATCGGTGCCCTATCAGCGctactctgtgtctgtgtgatttggACCGGGTTAGCAGCGGAAACACAAGGTGAAGTTGACTCCATACAAcgctctcactccccctctcaaGCCGTAGGGGACACAGACATAGACTCATCCCGAGGGAGAAGTTCCGTGGTTGGGTTAGTGCCCAGGGCGGGGATGGGTGCCACTGGTGATCTGCTCGAGTCATTCCTGGCCCAGAAGGATCGTCTCCTCTACCAGACAGGGGGGGTGGTCCTGCCCTCTGCTCAGCCCCAAGACCTGCTGCCTCTCCTGGGCAGAGGACTGAGCGTGAGGGGCCTGTCTGGTGGTCTCTCTATGGATCAGCAGGGTCTGTTGAAGAGGATAGGATCCCTAGTCTCACAGCCCCACGACAGTGGACCCCTCCTCCCGTCACAGCCCTCCCAATCTGACAAcaaccccatcccctcctcctcccagcccgggacacacacatccacacacacaccgctggGACAGCGAGATGAGGTCACCGCTATCATCATGGCGACCATGGCTGCAGACACACCTTCACCAGCTGTGTCCGGCTGTATGGTGAATTTCTCCGACCCAGAGGGATACATAGACTCTTCTGACGACCCCCCTCTACCAGATGGAACATTCCTACACTGTACATACACCGTCACTGTGTACACAGGCTATGGAGTCGAGCTACAGgtGAAGAGTGTGAATCTGTCAGAGGGAGAGCAGCTGTCAATCAGAGGGGTGGATGAGGGTGGGGCCTTGCTAGTTCTGGCCAATCACACGCTTCTGGTGGAGGGTCAGGTGATCCGCAGTCCGACCAATACCATCTCAGTATACTACCGCTCCTTGCCTGAGGGGGGCATGGGCATGTTCCAGCTGCACTACCAGATATTCCGTCTGAGCTGTGCCCTGCCGAGGAGGCCTCATTTTGGGGAGGTGTCAGTGCTGGACCTGCTGCCAGGGGGCACTGCCCGCTTCCACTGCCATATGGGCTATCACCTGCAGGGGGCAGTGGCGCTCACCTGCCTCAATGCATCTCTGCCTGTCTGGAGCAGCAAGGAGCCCAGCTgtagagcACTATGTGGGGGATCAGTGAAGAACGCTACAGTAGGGAGGgtcctatctccctctccccgCCTGGGGCCCGACGCCACCCAGGACCGTTCCTGCTCCTGGTCCATGGAGGCCCCCACAGCACAGAGACTACACCTGCACCTGGAGAGACTGGCCCTTGGACCCACCgaaagACTTGTGTTATGGAGCGGTCTGGACGCTGGGTCTGTGGTGCTGTTTGACTCGGGCCGGGGTGGTCCAATACCGTTTGAAGGGGTGATCAGTGAGGGTCCAGCAGTCAGGGTACAGTTCATCACTGACCAACCTAACCACAATACAGGCTTCAACATCCGCTATGAGGcgtTTAAGCGTGGCCATTGTTATGAGCCCTACCTGCAGAATGGTAACTTCAGCACCACTGACCAGGCCTACGGTGTTGGCGCTGTGGTGCAGTTCAGCTGTGATACTGGTCACTCTCTGGAGCAGGGGCCGCCAGTCATAGAGTGTATCAATGCCAGAGACCCCTACTGGAACGACACGGAACCACTCtgcaaagcCCTGTGTGGGGGAGACCTAGCAGGTCCTGGGGGTGTGATCCTGTCTCCCAACTGGCCAGAGTGgtacggagagggagaggactgcaGCTGGAGGATACATGTAGGGGAGGACAAATGCGTGCTGCTCGACGTACAGctTCTGAACCTGAGTGACAGTGACATGTTGACCATCCTGGACGGTGATGAAGTCACCACCCATATCCTGGGCCAGTACGTGGGCGGAGCCGGGCCCTTCAAGATACAGTCCACGACCCCTGACCTCACCGTGACCTTCCACTCCGACCCTGCCGGCCTCGTCTTCGGCAAGGGAGAGGGCTTCATCATCAACTACATGGAGGTCTCCCGTAACGACTCGTGTCCGGACCTGCCGGAGATCCAGAATGGCTGGAAGACCACGTCCCATACTGCCCTGGTGCGGGGCGCTCGCATCACCTACCAGTGTGACCCAGGCTACGACCTGGTTGGACGAGAGACTCTTACCTGTCAGCTAGACCTCACCTGGAGCACACAGCCCCCCTTCTGCGAGAAGAtAATGTATTGTTCAGATCCGGGTCACGTGGAACACTCTACCAGGTCACTGTCCGACCCGAAACTCCTGGTGGGGACCACCATCCAGTACAGCTGCTACCCCGGCTTCATCCTGCAGGGCGGTGCCACACTCACCTGCTACGGACGAGAGCCTGGCACCCCTGTCTGGACGTCCAAACTACCCCACTGTGTCTCGGAGGAATCTGTTTCCTGTGAGAACCCTGGTCTCCCTGACAACGGATACCAGATCCTGTCCAAGCGCCTCTACCTGCCCAGCGAGTCGCTCACCTTCATCTGTTACCAAGGCTTCGAGCTCATCGGCGAGGTCGCCATTAAGTGTATCCTGGGGAACCCGTCGTTTTGGAGCGGACCACTGCCACTGTGCAGGGCCAACCATGACTGCTTTGGCAACCATGCTTTGGAagtTGTTGAGGCAGCAGCCGGGTCAGGTCTGGACGGTGGCAACATGGCATTGGCCATCTTCATCCTTGTACTTCTGCTCTCCGTGCTGCTGGGAGGAGCCTACGTCTACATCACACGGTGTCGCTACCACTCCAACCTGCGGCTGCCGCTCATCTACCCACACCCTTACAGTCAGATCACCGTGGAGAGCGAGTTTGACAACCCACTCTacgagacaggaggggacaACCGTGAATATGAGGTATCAATATGAGGACCATCTCCACTGTTGGAATCCCAAAATGAAGCATCCACCCCACCAACCCATCCCCctacccttcctcctcctccttagaCCGGCCCAGGTGGAAGTTATGTAAATACAGACTGACTATAGTCTTGCCCCTTTCCCCCATGATCCCATGACCCCCGTGACCCTGTCCTCCAATCAcaaagagaggaatgagagagagggaagatgagtCAGAGAGGcaatgggggagaggagaaaggggaggacagGAGATACTGTGAAAGGGGGCTGCAGGATTTTGGGGGGATAAAGAGACTGAAGCACTTGTGACAAGTTGTCCATTTACTCGTGTCTACCATTAGAGAACAAatacagagacagggagggaatatgtgaaggagagagagagtgggagagaggtgagggagagaagtGGAGTGAGAAAGAGGAGTGAAAGATAGAAGGAAGTGACCTCACAGGACGTGAGGTCATTATCTCTTCCTGGTTGTGCCCCATCTTCCTGCCTGCAGTCATTTCTAAGGCCTGGTTTTAGACCTGTTTTATAGTACTGGTTTTACCGTAGTAACTGACCTGTACAATCTCAACCAACCCATAACACCAGAAGAGGCCACCATAAGATgtatttattttgatgtatatGTGACGTTTTATGCGGATTAATGAATGTACATTTTCATTTTGAGAATACAAAAAGAAAAGACGTACCATGCTACTGACTTCCCTAAATAAATGGTCCAAAAAAAGTATGAAAGAATCTTTCTATCAAAATAAAACACACGCACTTGTC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: seizure 6-like protein

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967953.1 False 3905 mRNA 0.55 17 11250269 11300824
XM_036967954.1 True 3899 mRNA 0.55 17 11250269 11300824

Neighbor

gene id symbol gene type direction distance location
LOC100135966 rps27a coding downstream 6264 11241994 ~ 11244060 (-)
LOC100136736 LOC100136736 coding downstream 13932 11232998 ~ 11236337 (-)
LOC110509613 LOC106562989 coding downstream 31313 11215478 ~ 11218956 (-)
LOC118945308 NA coding downstream 56770 11190570 ~ 11193499 (-)
LOC110509316 LOC106563014 coding downstream 91267 11139422 ~ 11159002 (-)
LOC110509360 myo18b coding upstream 14819 11315643 ~ 11347641 (-)
LOC110509319 LOC106562995 coding upstream 29125 11329949 ~ 11333529 (-)
LOC110512753 LOC106568375 coding upstream 50370 11351194 ~ 11448019 (-)
LOC110509320 cryba4 coding upstream 148150 11448974 ~ 11452011 (-)
LOC110509622 NA coding upstream 164020 11464844 ~ 11468057 (-)
G2151846 NA non-coding downstream 9722 11240212 ~ 11240547 (-)
G2151845 NA non-coding downstream 10161 11239773 ~ 11240108 (-)
G2151799 NA non-coding downstream 116573 11132594 ~ 11133696 (-)
G2151802 NA non-coding downstream 117775 11132140 ~ 11132494 (-)
G2151839 NA non-coding downstream 122466 11127602 ~ 11127803 (-)
G2151944 NA non-coding upstream 55936 11356760 ~ 11357715 (-)
G2151952 NA non-coding upstream 125063 11425887 ~ 11427513 (-)
G2151953 NA non-coding upstream 125351 11426175 ~ 11428409 (-)
G2151771 NA other downstream 256390 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 280968 10923070 ~ 10969315 (-)
G2151189 NA other downstream 450951 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1812732 9365212 ~ 9437537 (-)
LOC110509625 LOC106568355 other upstream 155794 11456618 ~ 11525214 (-)
G2152107 NA other upstream 421248 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 640638 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1348352 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1786629 13087453 ~ 13091356 (-)

Expression


Co-expression Network