LOC110509360 (myo18b)


Basic Information

Item Value
gene id LOC110509360
gene name myo18b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11315643 ~ 11347641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509360
ATGGCCCTGCGAAACGAGCAGTTGGTCAACGGAGAGCGAGGCCGCCGCTCCAACCAATCAGATCTCAAGACCTCCACGCCCCGGCGAGTCCTGTCCCCCAAACTCAAGAGCCCACCCCTGGGGGCGACAGCCAAACAGGAAttgAATCCGTCTGAGTTGAACCTGTGTGAGGACTTGAGGAACCTGAGGGTGGAGCGCTCCACACTTTAACCAGTCGAGCTAAAGCCAGCATGCCCCTCACACACGCTGGACCCAACCTGCTCAACTTCTGGCTGCCGCTGAACCAACACGGaaagACCCCTCATTCCCGTCGTGGGGACAGTGTGTGGGACGCCCCCCCTGCCCTGGCCGCTCTAGTCAGGCGTGTGTATGCCTCCAAGGTAGGCACGCGCAGGGACCAGAGTGTGTGCGCGGTGGGATGCAGTGGCACGGGCAAGACCACCTCCTGCCAAGCTttcacccacacacactcctcaAACAGGCTGGCACCGTCGGAGACAGCATCAGTGtggAGCGTACCCAGGCAGTGTTTACGATCCTAAGGTCTTTTGGGTGTGTGAGCTCTCAGCACAGAGACGCCTCATCCCGCTTCGCTGAGAGAGTTCCAGTAGACTTTGAAGCTCCAGAGACCagtcctgctgtggtggtgtatGCCATAGCCCGCTCTACAggtgcgAGGGGCGGAGGGAGACCCCAGAGGACTGCTGTGGGTTCTGGATGAGGAGATGGTGACTCCGGGATCGACAGAAAACACTGTCCTGGAGAGAGTCTGCCAGTACTACAGCTCCACTGTGCGTCAGTGTGAGCAGCCCCTGCAGTGGGAGGTGAGCCACCTGATGGGTTCTGACCCGGTCAGATATGACCTGACTGGATGGTTCAACCTGGTTCGGAGCAACCCATCTGCTCTCAATGCCATCTCGCTGCTGCAGAAGTCCTCTGTttgGGTAGTGAAGACGCTGTTCGGCCCCCGTGCCTCTGTGCCCCGCCCCCGTGTCGAGGTTTGGGAGGGGGCAGCCAGGGCTCGCTACAGAGGAGTGGCACTGTCAGAAAGACCTTCAGTGGAGAATTGGGCGCCATACGCAGGCACACCCGCTGTAAATCAGTCAAACTACCGGCCGATGCTCTGTTGAATCTGATTGGTCGAGCCAGGTCAGTGTTCATGCAGTGTGTGTTTGCTAAGACAGACAGCGGTAGCACTCTGCACACATCCTCCCAGCCCTGCAGCTCTACCACACAGGTTATTCGGAACACGTGACTCTGAGTGACTTCAGGTGTCGTTTCCAGGCTCTGTCTCCTCTGGTTATGAAACGGTATGGTTCAGTCTTCATCACCCCGGATGAGAGGAAGGAAAGTGGAGGAGCTGCTGGTAGATCTGGATCTGGAGAGAgtatcagggagggagggagcttcTGTTCTGACAGTACTGAGCTCCTTAGAGTCAGTCTCTGACACAGTGTTTCTGAAGATTAGTACAGTAGGTAGGATGCCggtatctctgtctgtccccatACAGGTGCAGCAGATTGCTGTGAGGTGTTTCCAGAGTAACATCCGTACTCTGAGATGCGTGGCCAAGTGGATCTGGTGGAAACTGCTGTGTAGAGTACGCCCCCTACTGGATGTTAACATGGACGACCAGAGACTCAGAGCCAGGGAGGATGAGATCATGGCTCTGAGACGCCGGCTGAAGAAgtctgagagggagaggaacgaGCTGAGCCAGACCACTGACATCCCTGAGACCAAGGTGACGGCGGTGTCGTCGGAACTAAGTGGCGAGCGTTTCCGCGGTGACGCTgctCATCTGGACCAGTGTAAGGTCACCAGGGGGGCGCTGGAGAAACAGttggaggaggagaaacagaaaGTGGGCCACAGGGACTTTGAGGTGGAGAAGAGACTGGGGAGAGATCTGAAGAGAACCCATGCTCTGCTGTTGGACGCTCAGCTACTACCGTCTACCATAGACAACCCTGGACACAACCAGGCCCCCGGCAGCAAGGAACACATAGAGCGCCTGCACTGccagctggccgtgaccgTGGGACCCAtgagttggGGAAGAGTGAAGCGAGGAGTGCTGGAGTATTTTCAGAAGACTCTGTCCATGGAACTGGAGAATGCTCAGAACTAGAGAACATCTGCAAACACAAGCATCtgGTGGATGAGCAGGTAGTCCAGCTCCAACATGAGAAGTCAGATCTGTTGAAGAGACTAGAGGAGAACCAGGGGGACCTTGATGAACTCCTGAACAAACACAAAGCCCTCATCACTCAGtcctccggTGGTATCTCTCAGGTCAGAGAGTTGCAGGCTGAACTGGAGGAGGTCAataaacagagacacacagtacAGGAAGAGcTTGCAACGAGTGTGACCAGGGTGCAGCTCCTGGAGTCGCCCACGGTGGGCCGTAGTGTCGTCAGTAAGCAGGAGGCCAAGGTGTGTGACCTGCAGAACAAGCTGGAGTTCCAGAGAGGACAGGTCAAGAGGTTTGAGgtgctgCATCTGAGGGAGAGTGTTGTGTGCCTTGGAGAGGAGCTGGAACAGAGTGCTGAGACgggggccagggagagagagaacaggcaacGCCTCCACGAGATGGAAGACCTGGCTCAGAGAGAACAGGACAGTAGCCGCAGACGCATAGagctggAGATGCCAATGACGGAGCTGAGTACAGTCCGACAGACATTACGACATCCATCCGCCGTATCGTTGATCCGCAGGCCTCCCTGGAGGAAGTGGAGTCTAGTGATGAGTGACTTGTATCTTACTGTGTTGGATGGTGTGAGAGTGGTATCGGGGGAAGGGTTAAAGCAATGGTGTGTGTGGGAAGAATGACTCTGTTAGGAGTCAAGGACGGGTACAGGTGTGTTCACAAGGAAGTGACGTTATCACTGATATTAccactgacctttgacccctctCCCCAAGTGTTGCGACGGCTGTGGAATCCTTGACCAGAAAGAGAGACCTGTAAGAACCCTGGGtccctgtgtgtgtttttagacCAGTCTGTTCTGACTTGATCCCAGgactgttgatgatgtggacagaCCGAGCATGTTGCAATGCTGGTTGTGAGTGGCTAGATGTCTGAGTTGTAGTCTGACTGTTACTGTCTACGGCGGCACCATCTccctgttggttttgtcttgtggTCTGTGGGTGGACCGGTTCGAGGACCACAGGGCTGGAGCAAAGAAACGTTTAAGAAGTCACAATGAGCTCGTCTCTGTTCTAAGGTGTGTGCATGAGAGTTCACCTGCTTTGATATTCTTGTCTTCCATGATGCATGGGAGTTACAATACAGAAGCCagttctgctctctccctcctgtcccttTCTCTATCGTCATTTTACCGTTCCCCCTTTCAATCCTGCCGGCTCTGTCGCTTCTCTGTCCAACTTCTGTTCTTTGACCTATTTTAATTCTCGCTCCCACCTgttcctcttctttcctctctctgtgtcagacAGGTGAcatactggtactgtgtattaACTGTGTGTGAATGTCTCCTGCTgtgagaccagaggtggcagagaggatacagagacaGGAAATGTCCTGTGGCTGTCCCGGACTTAGAAGTCTTGCATCACTGGCTGTGCAGTGTCGCGTGTCTTCTCTCTCTTGGTAGTGTGTGATCTCTGCCTGCCAGTAACActgtgtaccgtgtgtgtgtgtttctctcttcctcagcAACAGTGTGTCTAGTGTTGGTTCTCAATCTCTGGACACGGAGGATGTTGGCGAGGTTATCTGTTATTGCCTAGGCATTCCCCAGGGGGGGGGCTCTCCCTGTGGCAGCAGTACAATCAGCAAccagttggtcacagacaccATGAGCACTTACAGCTTCCGATGAGGGTTCAGAACCAGGGGGTGCGGTTGGTAATGGGGATAGTTCAGGTCTCGGTCGGGCCTCCTCCCTCTCCGAGCTGTTAGAGGGTCTTCGTaagtggctgggggggggggggggggtggcagtaCTACTACTCTCCCAGACTACTGGGGCCTCAACCCTCTCCTTGGGCCCAGAAGACCTTCATCAGGAGCCTTGCAGCATCCTCAAACCTCCTTCCCCACTGCTACCCCGAGCCACCAGTCTAGGCAAAATAAGCGAACCCCAGGCTTCATCAGCAGCCTCCAGGGACTCGAGCCAAACTCGACAGCTCCTCCAACTCTTCCCCTCCGAAGAACCAAACCAATGAGACGCAGGCTGCTGGGTAGAGTTGTCAGCGAGGGCGGTGGAGAGGGTTCTCTGGGGTCGGAACCCATGGTGTTCCAGAACCACCGTCTCCTAGGTGACAGTAACTGTGACAACGCAGCCTCTGACATTCTGCCGGTCATCTGACAGGCCCAGTCCACCAGCAGCCTGGCCAATTCAGTCGGAGGGCACTCAGCTCAGGGTTTGGGAGGAGGGGTGCAGGGAGAGACTAAGAGGAAAGTAGAGAGGTTGAGGTGTAGCATGGAAATATACACATGTAAGGTAGTCAATACAAGGTTTTATGTATTCCTCCCTCTCCCTAGTCTGTGTGTGAGGCAGGATAAACTGAAGCCACTCAGAGATCCCTATGCAAGTTGCAAGGAGTCACACTCAAGCCAAAGAAGATCGACAGTGCATTTGGAacgtattcagacctcttgacttgttccatattttgttacgttacagccttattctgaagtggattcaattgttttcctcatcaaatCGACACAATGCAGAAAGGTTTTTAAACATTTGTTCAAATTTATAAAAGTTAAAcaactttgctatgagacttgaaattgagctcaggtgcatcccgtttccattcaTCTTTGAgccgtttctacaacttgattggaatgcACACAGTTGgcagtggatgtcagagcaaaaaaaacaagccatgaggtcgaaggaattgtccgtagagctccgagacaggattgtgtcgaggcacagatctgggaaagggtacttAATTTCTGCAGCTTTGGAGGTTCCCAAGACCAAAGTGGCCGCCGTCATTCTTAAAATGGAACAAtattggaaccaacaagactcttcctagagctggccgcccagccaaactgagaaaatgggggaga
>TU2460661
CTGCGTCAGCTGGAGATGCAGTTGGAACAGGAGTCCACGAGAAACACGACCAGGAGGGACTGATAACTACACTCTgtgaccagGTGGGCCACAGGGACTTTGAGGTGGAGAAGAGACTGGGGAGAGATCTGAAGAGAACCCATGCTCTGCTGTTGGACGCTCAGCTACTACCGTCTACCATAGACAACCCTGGACACAACCAGGCCCCCGGCAGCAAGGAACACATAGAGCGCCTGCACTGccagttggGGAAGAGTGAAGCGAGGAGTGCTGGAGTATTTTCAGAAGACTCTGTCCATGGAACTGGAGAATGCTCAGAACTAGAGAACATCTGCAAACACAAGCATCtgGTGGATGAGCAGGTAGTCCAGCTCCAACATGAGAAGTCAGATCTGTTGAAGAGACTAGAGGAGAACCAGGGGGACCTTGATGAACTCCTGAACAAACACAAAGCCCTCATCACTCAGtcctccggTGGTATCTCTCAGGTCAGAGAGTTGCAGGCTGAACTGGAGGAGGTCAataaacagagacacacagtacAGGAAGAGcTTGCAACGAGTGTGACCAGGGTGCAGCTCCTGGAGTCGCCCACGGTGGGCCGTAGTGTCGTCAGTAAGCAGGAGGCCAAGGTGTGTGACCTGCAGAACAAGCTGGAGTTCCAGAGAGGACAGGTCAAGAGGTTTGAGgtgctgCATCTGAGGGAGAGTGTTGTGTGCCTTGGAGAGGAGCTGGAACAGAGTGCTGAGACgggggccagggagagagagaacaggcaacGCCTCCACGAGATGGAAGACCTGGCTCAGAGAGAACAGGACAGTAGCCGCAGACGCATAGagctggAGATGCCAATGACGGAGCTGAGTACAGTCCGACAGACATTACGACATCCATCCGCCGTATCGTTGATCCGCAGGCCTCCCTGGAGGAAGTGGAGTCTAGTGATGAGTGACTTGTATCTTACTGTGTTGGATGGTGTGAGAGTGGTATCGGGGGAAGGGTTAAAGCAATGGTGTGTGTGGGAAGAATGACTCTGTTAGGAGTCAAGGACGGGTACAGGTGTGTTCACAAGGAAGTGACGTTATCACTGATATTAccactgacctttgacccctctCCCCAAGTGTTGCGACGGCTGTGGAATCCTTGACCAGAAAGAGAGACCTGTAAGAACCCTGGGtccctgtgtgtgtttttagacCAGTCTGTTCTGACTTGATCCCAGgactgttgatgatgtggacagaCCGAGCATGTTGCAATGCTGGTTGTGAGTGGCTAGATGTCTGAGTTGTAGTCTGACTGTTACTGTCTACGGCGGCACCATCTccctgttggttttgtcttgtggTCTGTGGGTGGACCGGTTCGAGGACCACAGGGCTGGAGCAAAGAAACGTTTAAGAAGTCACAATGAGCTCGTCTCTGTTCTAAGGTGTGTGCATGAGAGTTCACCTGCTTTGATATTCTTGTC

Function

symbol description
myo18b Predicted to enable ATP binding activity; actin binding activity; and cytoskeletal motor activity. Acts upstream of or within sarcomerogenesis. Predicted to be part of myosin complex. Is expressed in musculature system and somite border. Used to study myopathy.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509360 False 5107 mRNA 0.53 23 11315643 11347641
TU2460661 True 1477 lncRNA 0.53 8 11317599 11326837

Neighbor

gene id symbol gene type direction distance location
LOC110509318 LOC106562994 coding downstream 14819 11250269 ~ 11300824 (-)
LOC100135966 rps27a coding downstream 71638 11241994 ~ 11244060 (-)
LOC100136736 LOC100136736 coding downstream 79306 11232998 ~ 11236337 (-)
LOC110509613 LOC106562989 coding downstream 96687 11215478 ~ 11218956 (-)
LOC118945308 NA coding downstream 122144 11190570 ~ 11193499 (-)
LOC110512753 LOC106568375 coding upstream 3553 11351194 ~ 11448019 (-)
LOC110509320 cryba4 coding upstream 101333 11448974 ~ 11452011 (-)
LOC110509622 NA coding upstream 117203 11464844 ~ 11468057 (-)
LOC118945324 jelt coding upstream 155517 11503158 ~ 11509942 (-)
LOC110509625 LOC106568355 coding upstream 175812 11456618 ~ 11525214 (-)
G2151894 NA non-coding downstream 63180 11245236 ~ 11252463 (-)
G2151846 NA non-coding downstream 75096 11240212 ~ 11240547 (-)
G2151845 NA non-coding downstream 75535 11239773 ~ 11240108 (-)
G2151799 NA non-coding downstream 181947 11132594 ~ 11133696 (-)
G2151802 NA non-coding downstream 183149 11132140 ~ 11132494 (-)
G2151944 NA non-coding upstream 9119 11356760 ~ 11357715 (-)
G2151952 NA non-coding upstream 78246 11425887 ~ 11427513 (-)
G2151953 NA non-coding upstream 78534 11426175 ~ 11428409 (-)
G2151954 NA non-coding upstream 78893 11426534 ~ 11427394 (-)
G2151771 NA other downstream 321764 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 346342 10923070 ~ 10969315 (-)
G2151189 NA other downstream 516325 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1878106 9365212 ~ 9437537 (-)
G2152107 NA other upstream 374431 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 593821 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1301535 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1739812 13087453 ~ 13091356 (-)
LOC110509319 LOC106562995 coding upstream 3112 11329949 ~ 11333529 (-)

Expression


Co-expression Network