LOC110509319 (LOC106562995)


Basic Information

Item Value
gene id LOC110509319
gene name LOC106562995
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11329949 ~ 11333529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968172.1
tccctccctgtctctccctccctccctctctttgtctcttccctccctctttttgtctcttcccccctctcgctacctactctccttgtctctccccattctttctctctctcccctccccaggtTTTCATTAAACGAGGTATGTTAAAGTACTTGGGAGCAGCAGCGAGACAAGCTGGTCAGTGATTGGCTGGTTCAGCTACAGGCTGCCTGTATGGGACACCTGGCTAGACAACAAGGCCGCAAAATGAAGGCGTCTGACCgatgacctctaacccctgactgCTAACCCAGGTGAAACATGTTGTAATGTGTTCGGTTAGGTAGGCGCtggtgtaacacacacacattcagtgaCTCTGGCATGACGGTATCACCCGATAATGTGTCTTCCTATAATTGTGGTTAGGTACAGTAGGTAGGATGCCggtatctctgtctgtccccatACAGGTGCAGCAGATTGCTGTGAGGTGTTTCCAGAGTAACATCCGTACTCTGAGATGCGTGGCCAAGTGGATCTGGTGGAAACTGCTGTGTAGAGTACGCCCCCTACTGGATGTTAACATGGACGACCAGAGACTCAGAGCCAGGGAGGATGAGATCATGGCTCTGAGACGCCGGCTGAAGAAgtctgagagggagaggaacgaGCTGAGCCAGACCACTGACATCCCTGAGACCAAGgctCATCTGGACCAGTGTAAGGTCACCAGGGGGGCGCTGGAGAAACAGttggaggaggagaaacagaaagTCTAGAGCAGAGAGTTCCGGACGGACAAGCTGTGTTAACTACTATAGGTCAAACTCGCACACACCGAACGGAAGATTTGACTGCACTGGATGTTAGCTGCTGATCTGGGTTATACTTCATGATGCATCGGTGAGTGTGCAGAATAAATGCCAGAATGCGAGTTTTGACACAGAAAAGGCAACGCAGGTTATTATAGTTGTGTGATTTTATATTTGTTTTCATTTGAAATTCAGTTTTGTTTCAGAtttgatttcaaatcaaattttgttagtcacatgcgccaaatacaacaggtgtagtagaccttacagtgaaatgctggcttacgagcccctaaccaacaatgcagttaaaaaaaaataagagataaaagctacaagtaattaaagagcagcagtaaaataacaatagcgagatatatatatatatatatatatatatacagggggtcacTGACACAGAATCAATCTTCGTTTTTTTggtttttttcagtttttgatttgttaaaaaagtttgaaatatccaataaaatgtcgttccacttca

Function

NR:

description
PREDICTED: unconventional myosin-XVIIIa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968172.1 True 1303 mRNA 0.45 3 11329949 11333529

Neighbor

gene id symbol gene type direction distance location
LOC110509318 LOC106562994 coding downstream 29125 11250269 ~ 11300824 (-)
LOC100135966 rps27a coding downstream 85944 11241994 ~ 11244060 (-)
LOC100136736 LOC100136736 coding downstream 93612 11232998 ~ 11236337 (-)
LOC110509613 LOC106562989 coding downstream 110993 11215478 ~ 11218956 (-)
LOC118945308 NA coding downstream 136450 11190570 ~ 11193499 (-)
LOC110512753 LOC106568375 coding upstream 17665 11351194 ~ 11448019 (-)
LOC110509320 cryba4 coding upstream 115445 11448974 ~ 11452011 (-)
LOC110509622 NA coding upstream 131315 11464844 ~ 11468057 (-)
LOC118945324 jelt coding upstream 169629 11503158 ~ 11509942 (-)
LOC110509625 LOC106568355 coding upstream 189924 11456618 ~ 11525214 (-)
LOC110509360 myo18b non-coding downstream 3112 11315643 ~ 11347641 (-)
G2151894 NA non-coding downstream 77486 11245236 ~ 11252463 (-)
G2151846 NA non-coding downstream 89402 11240212 ~ 11240547 (-)
G2151845 NA non-coding downstream 89841 11239773 ~ 11240108 (-)
G2151799 NA non-coding downstream 196253 11132594 ~ 11133696 (-)
G2151944 NA non-coding upstream 23231 11356760 ~ 11357715 (-)
G2151952 NA non-coding upstream 92358 11425887 ~ 11427513 (-)
G2151953 NA non-coding upstream 92646 11426175 ~ 11428409 (-)
G2151954 NA non-coding upstream 93005 11426534 ~ 11427394 (-)
G2151771 NA other downstream 336070 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 360648 10923070 ~ 10969315 (-)
G2151189 NA other downstream 530631 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 1892412 9365212 ~ 9437537 (-)
G2152107 NA other upstream 388543 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 607933 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1315647 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1753924 13087453 ~ 13091356 (-)

Expression


Co-expression Network