LOC110509623 (crybb1)


Basic Information

Item Value
gene id LOC110509623
gene name crybb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11446394 ~ 11458975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967338.1
CTTATTTAGATGGGCCACCTGCTAGATTTGGCTAACTAGCAAgccagctagttagctaataacTGTCAAAGCCCACTGATCCTGGATGATTGGTTTTTTATCTTCTTGGCAAGCTAAAAAATCATGTCAACCTTGCGGTATTGTGCGAAGCTTTCAAGCTTCCCAGCGGCGCCTTGTCGCCTATGCttttaacataaaacaaaacattaAGCGTCTACGAAGATGCTGCATAAAATCTATCGAAATGGCATCCGACGAAGACATCCCGTGAAAATGACGACAAAGGGAGAGAGCTAAAACAACAAGAGGAAGCCAGCTTCGCCTgtatcacacaacaacaacaacaaaaatcggACCACGAATGAATAGTCCAGATGCCGTATAAGAATCTCCTGATCCCACACCATGTCTCAGACCGCCAAGTCCGCCTCCAGCCAGGGCACTGATGTCAAGGACAAGGGAGCCCCTGCCCCTGCTGCCACTAGCAAGGCCACTAAGACCGGAGAACCCAGCGTCGGAAACTTCCGGATCATGCTGTTCGACCAGGAGAACTTCCAGGGCCGAATGATGGAGGTCCAGAACGAGTGCATGAACGTGTGTGAACGCGGCATGGACAGAGTGCGCAGTATCATCGTCGAGTGCGGCCCCTTTGTTGCCTTTGAGCAGACTAACTTCCGCGGGGAGATGTTCATCCTGGAGAAGGGAGAGTACCCTCGCTGGGATACCTGGAGCAACTCTTACCGTAGCGACTGCCTCATGTCCCTCAGGCCCATCCGCatgGACAGCCTGGAGCACAAGATCTGTCTTTTTGAGCTCTCCGACTTCAAGGGCAATAAGATGGAGATCCAGGAGGATGACGTGCCAACCCTCTGGGCGCACGGCTTCACCGACAGAGTGGGCAGCGTGAGGGTGCCCGGCGGAGTgtgGGTGGGTTACCAGTACCCCGGATACAGAGGCTACCAGTACCTATTTGAGTGTGGTGACTACAGACACTACAACGAGTTCTGTGCCTTCCAGCCTCAGATCCAGTCCATGCGTCGCGTCAGGGACATGCAGTTCCACCAGCGTGGTTGCTTCAACCTCACCTCCGCCAGCAAGTGAGCGACCTCTGGTGGATGCACGCTGTaactgcagccagccagccagccctccCTCACTCAACCCGCCCATCGGGCGCTTTTTATTTCTCCAATCCTattcctcctttccttcccttcaCCCCTCCATCCTAAAGGGATGGAACGGCAGCATCGTACCGAACGGAACATCCTAAATGACTTTTTATGATGCCAAATAATAAACATGTTTTGAAAAACTAGAA
>XM_036967337.1
TCCACCGAGCCCTTGCGTTCAGCCTTTGCCAGGGTATAAAAGCTAGGGTTCTGCGCTGAGATGACCAGCACGATCCAGCCTACCCCACACGGCACAGCAAGCTGTACACGCAGAATCTCCTGATCCCACACCATGTCTCAGACCGCCAAGTCCGCCTCCAGCCAGGGCACTGATGTCAAGGACAAGGGAGCCCCTGCCCCTGCTGCCACTAGCAAGGCCACTAAGACCGGAGAACCCAGCGTCGGAAACTTCCGGATCATGCTGTTCGACCAGGAGAACTTCCAGGGCCGAATGATGGAGGTCCAGAACGAGTGCATGAACGTGTGTGAACGCGGCATGGACAGAGTGCGCAGTATCATCGTCGAGTGCGGCCCCTTTGTTGCCTTTGAGCAGACTAACTTCCGCGGGGAGATGTTCATCCTGGAGAAGGGAGAGTACCCTCGCTGGGATACCTGGAGCAACTCTTACCGTAGCGACTGCCTCATGTCCCTCAGGCCCATCCGCatgGACAGCCTGGAGCACAAGATCTGTCTTTTTGAGCTCTCCGACTTCAAGGGCAATAAGATGGAGATCCAGGAGGATGACGTGCCAACCCTCTGGGCGCACGGCTTCACCGACAGAGTGGGCAGCGTGAGGGTGCCCGGCGGAGTgtgGGTGGGTTACCAGTACCCCGGATACAGAGGCTACCAGTACCTATTTGAGTGTGGTGACTACAGACACTACAACGAGTTCTGTGCCTTCCAGCCTCAGATCCAGTCCATGCGTCGCGTCAGGGACATGCAGTTCCACCAGCGTGGTTGCTTCAACCTCACCTCCGCCAGCAAGTGAGCGACCTCTGGTGGATGCACGCTGTaactgcagccagccagccagccctccCTCACTCAACCCGCCCATCGGGCGCTTTTTATTTCTCCAATCCTattcctcctttccttcccttcaCCCCTCCATCCTAAAGGGATGGAACGGCAGCATCGTACCGAACGGAACATCCTAAATGACTTTTTATGATGCCAAATAATAAACATGTTTTGAAAAACTAGAA

Function

symbol description
crybb1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 17 multiple types. Orthologous to human CRYBB1 (crystallin beta B1).

NR:

description
beta-crystallin B1-like

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967338.1 False 1321 mRNA 0.52 6 11446394 11458975
XM_036967337.1 True 1048 mRNA 0.56 6 11455978 11458975

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-223 NA coding upstream 107024 11339299 ~ 11339370 (+)
LOC110509616 LOC106563016 coding upstream 132420 11310457 ~ 11313974 (+)
LOC118945263 NA coding upstream 217773 11225076 ~ 11228621 (+)
LOC110509615 LOC106562990 coding upstream 231033 11206996 ~ 11215361 (+)
LOC110509317 LOC106562986 coding upstream 242103 11168585 ~ 11204291 (+)
LOC110509620 LOC106563087 coding downstream 950 11459925 ~ 11464582 (+)
LOC118945340 NA coding downstream 77296 11536271 ~ 11560808 (+)
LOC118945334 NA coding downstream 101937 11560912 ~ 11570700 (+)
LOC110509626 LOC106563084 coding downstream 127557 11586532 ~ 11634525 (+)
arrdc3b LOC106563080 coding downstream 226375 11685350 ~ 11693079 (+)
G2151577 NA non-coding upstream 8576 11425872 ~ 11437818 (+)
G2151555 NA non-coding upstream 14142 11359557 ~ 11432252 (+)
G2151568 NA non-coding upstream 33993 11411930 ~ 11412401 (+)
G2151557 NA non-coding upstream 47150 11359182 ~ 11399244 (+)
G2151474 NA non-coding upstream 89582 11301081 ~ 11356812 (+)
G2151603 jelt non-coding downstream 5869 11464844 ~ 11467954 (+)
G2151723 NA non-coding downstream 262990 11721965 ~ 11722354 (+)
G2151724 NA non-coding downstream 264421 11723396 ~ 11723678 (+)
G2151725 NA non-coding downstream 264933 11723908 ~ 11724149 (+)
G2151726 NA non-coding downstream 265363 11724338 ~ 11724554 (+)
G2150729 NA other upstream 984174 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1137315 10064167 ~ 10309768 (+)
G2149183 NA other upstream 2071882 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2414099 8957803 ~ 9032295 (+)
G2152150 NA other downstream 305249 11764224 ~ 11766351 (+)
G2152639 NA other downstream 841817 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1300905 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2209314 13668289 ~ 13669170 (+)
G2154391 NA other downstream 2313733 13772708 ~ 13776134 (+)

Expression


Co-expression Network