LOC110509320 (cryba4)



Basic Information


Item Value
gene id LOC110509320
gene name cryba4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11448974 ~ 11452011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036967339.1
GAGGCTTTAAAAGGGTGGGGGCGCGTGAGTCCTCTCACTCTCATTCCGGGACAGCCAAGGGCATCAAAGCAAGACAACGAGATGACTCACCATTGCACCAAGTTCTCCGGCCACTGGAAGatcatTGTCTTCGACGAGGAGTGCTTCCAGGGGCGTCGGCACGAGTTCACCTCCGAGTGCTGCAATGTGATGGAGTTCGGGTTCGAGACTGTGCGCTCCCTCAGGGTGGAGAGTGGAGCTTGGGTTGGCTATGAGCATGCTTCCTACCAGGGCCAGCAGTTTGTGCTGGAGAGAGGAGAATACCCCCAGTGCGACGCCTTCGGAGGAAGCAATGCCTACCATATCGAGAGGATGACCTCCTTCAGGCCCATTGCCTGCGCTAACCACAGGGAGTGTCGTATGACCATTTATGAGCGCGAGAACTTCCTTGGTCGTAAGGGCGAGCTGAGCGACGACTACCCCTCCCTCCAGGCCATGGGCTGGTGCAACAACGAGGTCGGCTCCCTCAGGGTCCAGTCCGGAGCTTTTGTGTGCTACCAGTACCCCGGATACCGTGGCTACCAGTACATCATGGAGTGTGACCGTCACTGTGGCGAGTACAAGCACTTCAGGGAGTTCGGCTCCCACTCCCAGACCCCTCAGATCCAGTCCATCCGCCGCATTCAGCAGTAACCTCTCACCGTTATTCCAAGCTTAACCCCACTGTTACCCAATGCTGAATAAACTGTCTTTATAAAACCTCA

Function


symbol description
cryba4 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 23. Orthologous to human CRYBA4 (crystallin beta A4).

NR:

description
beta-crystallin A4-like

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036967339.1 True 743 mRNA 0.56 6 11448974 11452011

Neighbor


gene id symbol gene type direction distance location
LOC110512753 LOC106568375 coding downstream 955 11351194 ~ 11448019 (-)
LOC110509360 myo18b coding downstream 101333 11315643 ~ 11347641 (-)
LOC110509319 LOC106562995 coding downstream 115445 11329949 ~ 11333529 (-)
LOC110509318 LOC106562994 coding downstream 148150 11250269 ~ 11300824 (-)
LOC100135966 rps27a coding downstream 204969 11241994 ~ 11244060 (-)
LOC110509622 NA coding upstream 12833 11464844 ~ 11468057 (-)
LOC118945324 jelt coding upstream 51147 11503158 ~ 11509942 (-)
LOC110509625 LOC106568355 coding upstream 71442 11456618 ~ 11525214 (-)
LOC110509627 LOC106563113 coding upstream 192022 11644033 ~ 11655110 (-)
vcanb LOC106568264 coding upstream 401318 11853329 ~ 11884996 (-)
G2151955 NA non-coding downstream 16066 11431821 ~ 11432908 (-)
G2151953 NA non-coding downstream 20565 11426175 ~ 11428409 (-)
G2151952 NA non-coding downstream 21461 11425887 ~ 11427513 (-)
G2151954 NA non-coding downstream 21580 11426534 ~ 11427394 (-)
G2151944 NA non-coding downstream 91259 11356760 ~ 11357715 (-)
G2151963 NA non-coding upstream 1012 11453023 ~ 11453224 (-)
G2152054 NA non-coding upstream 171581 11623592 ~ 11628058 (-)
G2152055 LOC107555460 non-coding upstream 176510 11628521 ~ 11629395 (-)
G2152011 NA non-coding upstream 181062 11633073 ~ 11637738 (-)
G2152088 NA non-coding upstream 244315 11696326 ~ 11696563 (-)
G2151771 NA other downstream 455095 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 479673 10923070 ~ 10969315 (-)
G2151189 NA other downstream 649656 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 2011437 9365212 ~ 9437537 (-)
G2152107 NA other upstream 270061 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 489451 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1197165 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1635442 13087453 ~ 13091356 (-)

Expression



Co-expression Network