LOC110509620 (LOC106563087)


Basic Information

Item Value
gene id LOC110509620
gene name LOC106563087
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11459925 ~ 11464582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590618.2
CCAGAACAAAAAATAGGGAGTGGGATGTCTCGCGTCCTCTTCCGTCTCTGTATGATTGCACAAGCAGCAGACTGAGCAGTCAACATGGCAGCACTTTTCAGAGCTAGAAAAGcccttgGCCTGTGTGGCTGTAGATCTCTGTCCTCGCTAGCTGAGCTACCAGAGATGCATCAGATGATGAGACAGACCTCTAGAGACTATGCAGACAGAGAACTGGCTCCTATAGCTGGCAAATTAGACAAGGAGCACCTCTTTCCCGCCCGACAGGTGCGAGAGCTGGGGGCTATGGGGGTGATGGCTGTAGAGGTTCCTGAGGCGCTGGGAGGAGCAGGTATGGACTACCTGGCCTACTCCCTGGCCGTGGAGGAGATCAGTAGGGGATGTGGCAGCACTGGATGTGTGGTCTCGGTCAACAACtcttTGTACATAGGGCCGATATTGAAGTTTGGAACACCGGAGCAGAAGGATCAGTGGATCACCCCTTTCACAAACGGAGAGAAAGTTGGCTGCTTCGCTCTGAGTGAACCAGataaTGGTAGTGATGCAGGGGCAGCGTCTACATTAgccagacaggagggagaggagtgggtaCTGAACGGGACTAAAGCCTGGATCAGCAACTGCTGGGATGCCTCAGCTACTGTCGTATTCGCTACCACCGACAAGTCACTCAAACACAAGGGTATCAGTGCATTCCTGGTGCCCATGCCTCACCCTGGCCTTTCCCTGGGGAAGAAGGAGGACAAGCTGGGCATCAGAGCAACCTCCACGGCCAACCTCATCCTGGAGGACTGTAGGATACCCCTGGGCAACATGCTGGGGCCACGAGGGTCTGGCTTCAAGATAGCCATGCAAACCCTGGACGGTGGGCGTATAGGCATAGCATCCCAGGCTCTGGGCATTGCTCAGGCGGCTCTGGACTGTGCTGTGGACTATGCTCACAAACGCACCGCCTTCGGAGCTCCCATTGGCAAGCTGCAGGCCGTACAGTTCAAGCTGGCGGACATGGCTGTAGCTGTTGAAAGCGCCCGTCTCCTCACCTGGAAGGCTGCAATGCTAAAAGACGCCAAGAAAACCTTCACCAAGGAAGCAGCGATGGCCAAACTATCAGCGTCGGAGGCCGCTACCTTCTGCGGCCATCAGTCGATCCAGGTTCTTGGGGGAATGGGTTACGTGACGGACATGCCAGCAGAGAGGCACTACCGCGACGCGCGAATCACTGAGATCTACGAGGGCACCAGTGAGATCCAGAGACTGGTGATAGCCGGCCAGCTGCTGAAGGAGTATGTACCATAGAGACTTGCGGGCTGCGCCCCGGATGGCAGTCTATtcgctacatagtgcactatttttggaCAGACCCCAACGGTCAAAAgtggtacactatatagggaatacgggtgCAATTTCAAATTGGCCCATAACAGCCACGACACCCAGGACTGCGTTCAGGACTGCAGTGTTCAACCGTGTTGTCAGCGTCAGTCAGCTACTGAACTGAAGGAATGTCAGACATGGAGACAGACTCGCACAGCTCTGGGTAGAAGTTGcccttaaccacagatctaggatcagattcccaAACTAATGCCCAAATCCTAACCTCAACTGTTACGGAGAGATAGTTGTTCCTGGACCAGTGGATAGAGGCACCTTGTACCTACCACTCCAAAGGGACAAGAAGACCAGGCCTGCATTCAGGACTGCGGTGTTCAGCAATGTTGTGGAACACTGCAACATGCATCCCACCTTACTTCAAATTTGTATAACGATTACAAAGCAATCCAAGACTGTCTCCGGTTTGAAGCCATTTTGTAACTGTCGATATCAACATGGAGATAAATATCAACCTTTCTGCCTTAACGTCATAATATTATCTGCTTTGAACTGATGGTGTCTGGTAATACACGCTAGTAGACTCGCAATTCTCACTGTGACCCTGTCTGTGTGAGGTGCAGTGCCTACTAGAGCCACAGGAGGGGAGTGTACAGTTTGGACTGCCCGTCACCTGCACTTCAAACGACGGGGGAaatcacaacaacaacatttgAACACGTGTAACATGCCTCCCCCCTTATTCTCTGCCTTGTAAATATTCACTGATCTAAAAGAGTTCTGTAGTCATAAAACAAGGACATACTGTAGTTGGCTAACGCCGCACCCAGGCTAGGCTGGTGGATGAATGAATCTTAGTTTTGATATAAAGAGTGATCTGTTCAGATGAAACTGTAAATGCCACAGCTAGAGAACCTGTTTCTGTCTGAGTTTCAGAGAAATTCTGAAACTGATATGTTTTACGATGCCGCCCTACACAGCCCAAGCTTGTGCCTCAACATAAACTGCTGCTGTTCATATTTTATCATAATTGATGGTACATgatgaaataaaaaaacatattttcatgt
>XM_036967335.1
CCAGAACAAAAAATAGGGAGTGGGATGTCTCGCGTCCTCTTCCGTCTCTGTATGATTGCACAAGCAGCAGACTGAGCAGTCAACATGGCAGCACTTTTCAGAGCTAGAAAAGcccttgGCCTGTGTGGCTGTAGATCTCTGTCCTCGCTAGCTGAGCTACCAGAGATGCATCAGATGATGAGACAGACCTCTAGAGACTATGCAGACAGAGAACTGGCTCCTATAGCTGGCAAATTAGACAAGGAGCACCTCTTTCCCGCCCGACAGGTGCGAGAGCTGGGGGCTATGGGGGTGATGGCTGTAGAGGTTCCTGAGGCGCTGGGAGGAGCAGGTATGGACTACCTGGCCTACTCCCTGGCCGTGGAGGAGATCAGTAGGGGATGTGGCAGCACTGGATGTGTGGTCTCGGTCAACAACtcttTGTACATAGGGCCGATATTGAAGTTTGGAACACCGGAGCAGAAGGATCAGTGGATCACCCCTTTCACAAACGGAGAGAAAGTTGGCTGCTTCGCTCTGAGTGAACCAGataaTGGTAGTGATGCAGGGGCAGCGTCTACATTAgccagacaggagggagaggagtgggtaCTGAACGGGACTAAAGCCTGGATCAGCAACTGCTGGGATGCCTCAGCTACTGTCGTATTCGCTACCACCGACAAGTCACTCAAACACAAGGGTATCAGTGCATTCCTGGTGCCCATGCCTCACCCTGGCCTTTCCCTGGGGAAGAAGGAGGACAAGCTGGGCATCAGAGCAACCTCCACGGCCAACCTCATCCTGGAGGACTGTAGGATACCCCTGGGCAACATGCTGGGGCCACGAGGGTCTGGCTTCAAGATAGCCATGCAAACCCTGGACGGTGGGCGTATAGGCATAGCATCCCAGGCTCTGGGCATTGCTCAGGCGGCTCTGGACTGTGCTGTGGACTATGCTCACAAACGCACCGCCTTCGGAGCTCCCATTGGCAAGCTGCAGGCCGTACAGTTCAAGCTGGCGGACATGGCTGTAGCTGTTGAAAGCGCCCGTCTCCTCACCTGGAAGGCTGCAATGCTAAAAGACGCCAAGAAAACCTTCACCAAGGTAtgcacacacaccacgcacaccGTCCTCTCTGTCACACTACGTAACGTTGTACTCCCTCCTTTCATGTCCCCACAGGAAGCAGCGATGGCCAAACTATCAGCGTCGGAGGCCGCTACCTTCTGCGGCCATCAGTCGATCCAGGTTCTTGGGGGAATGGGTTACGTGACGGACATGCCAGCAGAGAGGCACTACCGCGACGCGCGAATCACTGAGATCTACGAGGGCACCAGTGAGATCCAGAGACTGGTGATAGCCGGCCAGCTGCTGAAGGAGTATGTACCATAGAGACTTGCGGGCTGCGCCCCGGATGGCAGTCTATtcgctacatagtgcactatttttggaCAGACCCCAACGGTCAAAAgtggtacactatatagggaatacgggtgCAATTTCAAATTGGCCCATAACAGCCACGACACCCAGGACTGCGTTCAGGACTGCAGTGTTCAACCGTGTTGTCAGCGTCAGTCAGCTACTGAACTGAAGGAATGTCAGACATGGAGACAGACTCGCACAGCTCTGGGTAGAAGTTGcccttaaccacagatctaggatcagattcccaAACTAATGCCCAAATCCTAACCTCAACTGTTACGGAGAGATAGTTGTTCCTGGACCAGTGGATAGAGGCACCTTGTACCTACCACTCCAAAGGGACAAGAAGACCAGGCCTGCATTCAGGACTGCGGTGTTCAGCAATGTTGTGGAACACTGCAACATGCATCCCACCTTACTTCAAATTTGTATAACGATTACAAAGCAATCCAAGACTGTCTCCGGTTTGAAGCCATTTTGTAACTGTCGATATCAACATGGAGATAAATATCAACCTTTCTGCCTTAACGTCATAATATTATCTGCTTTGAACTGATGGTGTCTGGTAATACACGCTAGTAGACTCGCAATTCTCACTGTGACCCTGTCTGTGTGAGGTGCAGTGCCTACTAGAGCCACAGGAGGGGAGTGTACAGTTTGGACTGCCCGTCACCTGCACTTCAAACGACGGGGGAaatcacaacaacaacatttgAACACGTGTAACATGCCTCCCCCCTTATTCTCTGCCTTGTAAATATTCACTGATCTAAAAGAGTTCTGTAGTCATAAAACAAGGACATACTGTAGTTGGCTAACGCCGCACCCAGGCTAGGCTGGTGGATGAATGAATCTTAGTTTTGATATAAAGAGTGATCTGTTCAGATGAAACTGTAAATGCCACAGCTAGAGAACCTGTTTCTGTCTGAGTTTCAGAGAAATTCTGAAACTGATATGTTTTACGATGCCGCCCTACACAGCCCAAGCTTGTGCCTCAACATAAACTGCTGCTGTTCATATTTTATCATAATTGATGGTACATgatgaaataaaaaaacatattttcatgt
>XM_036967336.1
TCTCTGTATGATTGCACAAGCAGCAGACTGAGCAGTCAACATGGCAGCACTTTTCAGAGCTAGAAAAGTCTTCACTCGAGCAGGCGCGTTCTCAATGGGACACGTTAAGGACGCGGTGGACGGATGATGACCTTTCACCTAGTTTACCGCTGTGCTGGTCAGCTAACCGGcccttgGCCTGTGTGGCTGTAGATCTCTGTCCTCGCTAGCTGAGCTACCAGAGATGCATCAGATGATGAGACAGACCTCTAGAGACTATGCAGACAGAGAACTGGCTCCTATAGCTGGCAAATTAGACAAGGAGCACCTCTTTCCCGCCCGACAGGTGCGAGAGCTGGGGGCTATGGGGGTGATGGCTGTAGAGGTTCCTGAGGCGCTGGGAGGAGCAGGTATGGACTACCTGGCCTACTCCCTGGCCGTGGAGGAGATCAGTAGGGGATGTGGCAGCACTGGATGTGTGGTCTCGGTCAACAACtcttTGTACATAGGGCCGATATTGAAGTTTGGAACACCGGAGCAGAAGGATCAGTGGATCACCCCTTTCACAAACGGAGAGAAAGTTGGCTGCTTCGCTCTGAGTGAACCAGataaTGGTAGTGATGCAGGGGCAGCGTCTACATTAgccagacaggagggagaggagtgggtaCTGAACGGGACTAAAGCCTGGATCAGCAACTGCTGGGATGCCTCAGCTACTGTCGTATTCGCTACCACCGACAAGTCACTCAAACACAAGGGTATCAGTGCATTCCTGGTGCCCATGCCTCACCCTGGCCTTTCCCTGGGGAAGAAGGAGGACAAGCTGGGCATCAGAGCAACCTCCACGGCCAACCTCATCCTGGAGGACTGTAGGATACCCCTGGGCAACATGCTGGGGCCACGAGGGTCTGGCTTCAAGATAGCCATGCAAACCCTGGACGGTGGGCGTATAGGCATAGCATCCCAGGCTCTGGGCATTGCTCAGGCGGCTCTGGACTGTGCTGTGGACTATGCTCACAAACGCACCGCCTTCGGAGCTCCCATTGGCAAGCTGCAGGCCGTACAGTTCAAGCTGGCGGACATGGCTGTAGCTGTTGAAAGCGCCCGTCTCCTCACCTGGAAGGCTGCAATGCTAAAAGACGCCAAGAAAACCTTCACCAAGGTAtgcacacacaccacgcacaccGTCCTCTCTGTCACACTACGTAACGTTGTACTCCCTCCTTTCATGTCCCCACAGGAAGCAGCGATGGCCAAACTATCAGCGTCGGAGGCCGCTACCTTCTGCGGCCATCAGTCGATCCAGGTTCTTGGGGGAATGGGTTACGTGACGGACATGCCAGCAGAGAGGCACTACCGCGACGCGCGAATCACTGAGATCTACGAGGGCACCAGTGAGATCCAGAGACTGGTGATAGCCGGCCAGCTGCTGAAGGAGTATGTACCATAGAGACTTGCGGGCTGCGCCCCGGATGGCAGTCTATtcgctacatagtgcactatttttggaCAGACCCCAACGGTCAAAAgtggtacactatatagggaatacgggtgCAATTTCAAATTGGCCCATAACAGCCACGACACCCAGGACTGCGTTCAGGACTGCAGTGTTCAACCGTGTTGTCAGCGTCAGTCAGCTACTGAACTGAAGGAATGTCAGACATGGAGACAGACTCGCACAGCTCTGGGTAGAAGTTGcccttaaccacagatctaggatcagattcccaAACTAATGCCCAAATCCTAACCTCAACTGTTACGGAGAGATAGTTGTTCCTGGACCAGTGGATAGAGGCACCTTGTACCTACCACTCCAAAGGGACAAGAAGACCAGGCCTGCATTCAGGACTGCGGTGTTCAGCAATGTTGTGGAACACTGCAACATGCATCCCACCTTACTTCAAATTTGTATAACGATTACAAAGCAATCCAAGACTGTCTCCGGTTTGAAGCCATTTTGTAACTGTCGATATCAACATGGAGATAAATATCAACCTTTCTGCCTTAACGTCATAATATTATCTGCTTTGAACTGATGGTGTCTGGTAATACACGCTAGTAGACTCGCAATTCTCACTGTGACCCTGTCTGTGTGAGGTGCAGTGCCTACTAGAGCCACAGGAGGGGAGTGTACAGTTTGGACTGCCCGTCACCTGCACTTCAAACGACGGGGGAaatcacaacaacaacatttgAACACGTGTAACATGCCTCCCCCCTTATTCTCTGCCTTGTAAATATTCACTGATCTAAAAGAGTTCTGTAGTCATAAAACAAGGACATACTGTAGTTGGCTAACGCCGCACCCAGGCTAGGCTGGTGGATGAATGAATCTTAGTTTTGATATAAAGAGTGATCTGTTCAGATGAAACTGTAAATGCCACAGCTAGAGAACCTGTTTCTGTCTGAGTTTCAGAGAAATTCTGAAACTGATATGTTTTACGATGCCGCCCTACACAGCCCAAGCTTGTGCCTCAACATAAACTGCTGCTGTTCATATTTTATCATAATTGATGGTACATgatgaaataaaaaaacatattttcatgt

Function

NR:

description
short-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00248 ACADS, bcd; butyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590618.2 False 2405 mRNA 0.51 10 11459925 11464582
XM_036967335.1 False 2483 mRNA 0.51 9 11459925 11464582
XM_036967336.1 True 2541 mRNA 0.51 10 11459969 11464582

Neighbor

gene id symbol gene type direction distance location
LOC110509623 crybb1 coding upstream 950 11446394 ~ 11458975 (+)
trnaa-ugc-223 NA coding upstream 120555 11339299 ~ 11339370 (+)
LOC110509616 LOC106563016 coding upstream 145951 11310457 ~ 11313974 (+)
LOC118945263 NA coding upstream 231304 11225076 ~ 11228621 (+)
LOC110509615 LOC106562990 coding upstream 244564 11206996 ~ 11215361 (+)
LOC118945340 NA coding downstream 71689 11536271 ~ 11560808 (+)
LOC118945334 NA coding downstream 96330 11560912 ~ 11570700 (+)
LOC110509626 LOC106563084 coding downstream 121950 11586532 ~ 11634525 (+)
arrdc3b LOC106563080 coding downstream 220768 11685350 ~ 11693079 (+)
cetn3 LOC106563079 coding downstream 252102 11716684 ~ 11720313 (+)
G2151577 NA non-coding upstream 22107 11425872 ~ 11437818 (+)
G2151555 NA non-coding upstream 27673 11359557 ~ 11432252 (+)
G2151568 NA non-coding upstream 47524 11411930 ~ 11412401 (+)
G2151557 NA non-coding upstream 60681 11359182 ~ 11399244 (+)
G2151471 NA non-coding upstream 105369 11353305 ~ 11354556 (+)
G2151603 jelt non-coding downstream 262 11464844 ~ 11467954 (+)
G2151723 NA non-coding downstream 257383 11721965 ~ 11722354 (+)
G2151724 NA non-coding downstream 258814 11723396 ~ 11723678 (+)
G2151725 NA non-coding downstream 259326 11723908 ~ 11724149 (+)
G2151726 NA non-coding downstream 259756 11724338 ~ 11724554 (+)
G2150729 NA other upstream 997705 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1150846 10064167 ~ 10309768 (+)
G2149183 NA other upstream 2085413 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2427630 8957803 ~ 9032295 (+)
G2152150 NA other downstream 299642 11764224 ~ 11766351 (+)
G2152639 NA other downstream 836210 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1295298 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2203707 13668289 ~ 13669170 (+)
G2154391 NA other downstream 2308126 13772708 ~ 13776134 (+)

Expression


Co-expression Network