LOC110509622


Basic Information

Item Value
gene id LOC110509622
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11464844 ~ 11468057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590620.2
tatacaaaaaaaaacaaacgAAAAGACGAGTCAATGGTGGTTCGTCTACAATTGCGTGACATTGCAGAAACGAAACTCTTTCGCAAGCCTTGCTGGGAAACTAAACCTACACCTATCAGagagctttttgttgttgttgcacacGCTGTTGAGGACGGGTGTAAGGATCTTAATGCTCGAAATCTTCTCACACTGCCAAAGCTCACAAGATGATTTCGGTGCTGCTTAACGCTCTTGTGCTGATGTTGGTGTTGGGCCTAACTGGGGCAAGATATCGACTAACGCCATCAGGCCCCTCCACCATAAACCTGTGTGGTCAGATGTTTACAGTGACAAATGGAGGGGAACTCACCATGTACACAGATGCgatctcaccctctccctcccgttctccctactcctctccctccccttctccttcctcATCCTCCACCTCATATCCCTacaccaccccctctccctctccctctccctcttctctgactgtgtgtctgcgTTACATGGCCGAGGAGGGAGAAGACTTGACTTTCTTCAGCCTCACTCAGGGGAACAACTGGAACCTTTTACTGAAAAGGTATTATTGGGGGATGGACCACCTCTCCATCGATTCCTCCCAGGACTTTAGCTCCTATAAGCTGTTCAGGGCTGTCAGAGAGGCACACCCCTGGACCAGCCTGTGTGTTACCTGGGAGAAAAAGACAGGCATGGCCCAGGTGTGGAGAGGCGGGACAGTCAGCGTCAGGAAGAGGGTGTTTGGCCAGgtGACCAATGGGCCTCCTGTCTTGAAAGTGTTTAAGTTTGAGGGGCAGGTAACTGACGTGGAAGTGTGGGACAGAGTCCTCTCCCCAAGCTGGATACTGGCCTACATGTCTGGGTGGCAGTCCTACTGGTCCTACACCCCTGGTAATGTGCTGACCTGGTCCAAGGCCATCTACTCCACCAATGGTGAGGTTCTCCTGGAGAGAAACACCTACAACTCTGACCATCAGCATCAGCGCCCAGGACCAATTAAAAGGAAGACAAAGAGAAAGTTTGAATGGAGGAAGAGTGAGaatgcagagcagagagagggcaTGGCTGTAGGGGAGAGTAGTGATTGCCACCAGTGGCGATTTTAACATGTGAATCTTGGTGGGTCAAAAAATAacaaaagtgggatgcatgccagcaaatccacaacactaaacaatacattaattgcactataacagtgacaaacggtgcctACAAACGGCCTACATAAGCGGATCAAAGGCAATCCATAATTTTGACTAAGACAACAGCGAGCTAGGAcagatgtagtcaatataactatttgtttagaacgtttgaaatgtacagcgacagaattcagaacctgggccgttcttacagtgttctccctgtacaccaagtcagaaccatagtaaagataAAGGagacatataagcagacaatgaaagctcttacaatattcaatgattacatttctctaaaacaggttatagactacatgtgcaccaccaagtcagaacagtaggtgaaattaagaggggtaaatagaccaaattattagagtgaggtacatgggctactaacatcttactacacaacatacacttagtattactttcttagctacagtatacatatctccctggtatattacatcatttatgcagcagcaaacaatacatttttggactcaccttgttatGCTGTTTTCACGGCGGGTCTTTgttggcaaattttgtcatcaaagtctgtcaatctctggatttatggtgctttcaaaacaactgggaacttggaaaaaaaacaaggtcgaatcatAAGAACGTCATTGACCTTCatgtcgtagctctagaaagaggccggatttacaattccgagttggatgaccgttcaaagcgtattttcccagtctgaaCTCCTTTATTcccgacttcccagttgtcttgaactcactgaagtcaagttttcgcGGCGCAtcgctctgtattttctgctggcttgccccaccaccacagaaagcactgagcgaggctgaaacacctgcattttggaaaCTGCTCTGTGACTCGTatgaatgccaaaataacatgcaaaacagcctgtatttttatttatttttggtaaaaatgtggggctcaaaacagcccctcctgccctgaatgacaggtcgccactgaTTGACACTAACCCTTACTTTAGATTAGAATATGTACTtattgatgctccttggttgatACTTGTGAATCACTTAATGACTGCATTAAAAAGAAAATTAGCCTACAATATAGGCGACATAGGCCTATATAATTCAATAATATTTAAATAGATGTCACGTTCATTCAATTGAGTTCTATTTTGCTAATtgtatgctgtctgtctgtcattttgCCTCAATATTTTTCACGGTGTGTATCAACATGTGCAAAAATCTTGATTTATTGCATTATagggtaagcattagaataacCCGACTCAATAGTTGCTGCCATAAGTGATGATATCTTTTTAGTAGCTGATCCGTCATCAGTATTGTGGAATCATTCTAATGTTAATTAAGGTAAGATTTCGATGGAGAAAGATCATCCAACCTCCCAAGAGCAGCGAGGTCTCTTTCGATCCAATCAGTATCGGCACATGCCTCAACGACACACTTAGCGAACCTTCTCTTTGCGTGATGTTTTGGGAAGCGCACGTTACATCTTCGGCTGATGGGGGAGAAATGCATTGTTAATTAAAACACTCCTAAGCATAAATTCCATCGCGATCTTGAAACTGGGCCCTGGATCTGCGACATTACAAAATGATTCTAATTGATTTCCcatgtctgtcctgtcctgatGTCTGTCCTGATGGAGGAGAAATGCATTGTTAAAAGAGTCAAATTAAGTCCTAATCTGGCTGATGATTTAAATGATTGTTAAGAGTTAAATAACAGCTACATGATTTAAATAATTGTTCAAATGAAGTGCATGGCAAATTAAAAGCAATTGATG

Function

NR:

description
jeltraxin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590620.2 True 2987 mRNA 0.43 4 11464844 11468057

Neighbor

gene id symbol gene type direction distance location
LOC110509320 cryba4 coding downstream 12833 11448974 ~ 11452011 (-)
LOC110512753 LOC106568375 coding downstream 16825 11351194 ~ 11448019 (-)
LOC110509360 myo18b coding downstream 117203 11315643 ~ 11347641 (-)
LOC110509319 LOC106562995 coding downstream 131315 11329949 ~ 11333529 (-)
LOC110509318 LOC106562994 coding downstream 164020 11250269 ~ 11300824 (-)
LOC118945324 jelt coding upstream 35101 11503158 ~ 11509942 (-)
LOC110509625 LOC106568355 coding upstream 55396 11456618 ~ 11525214 (-)
LOC110509627 LOC106563113 coding upstream 175976 11644033 ~ 11655110 (-)
vcanb LOC106568264 coding upstream 385272 11853329 ~ 11884996 (-)
xrcc4 xrcc4 coding upstream 417634 11885691 ~ 11915884 (-)
G2151963 NA non-coding downstream 11620 11453023 ~ 11453224 (-)
G2151955 NA non-coding downstream 31936 11431821 ~ 11432908 (-)
G2151953 NA non-coding downstream 36435 11426175 ~ 11428409 (-)
G2151952 NA non-coding downstream 37331 11425887 ~ 11427513 (-)
G2151954 NA non-coding downstream 37450 11426534 ~ 11427394 (-)
G2152054 NA non-coding upstream 155535 11623592 ~ 11628058 (-)
G2152055 LOC107555460 non-coding upstream 160464 11628521 ~ 11629395 (-)
G2152011 NA non-coding upstream 165016 11633073 ~ 11637738 (-)
G2152088 NA non-coding upstream 228269 11696326 ~ 11696563 (-)
G2152090 NA non-coding upstream 228899 11696956 ~ 11697288 (-)
LOC100135966 rps27a other downstream 220784 11241994 ~ 11244060 (-)
G2151771 NA other downstream 470965 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 495543 10923070 ~ 10969315 (-)
G2151189 NA other downstream 665526 10718021 ~ 10799318 (-)
ttc33 LOC106568686 other downstream 2027307 9365212 ~ 9437537 (-)
G2152107 NA other upstream 254015 11722072 ~ 11722479 (-)
atg10 atg10 other upstream 473405 11940630 ~ 11945825 (-)
G2153174 NA other upstream 1181119 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1619396 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 2260776 13728833 ~ 13731096 (-)

Expression


Co-expression Network