LOC118945340


Basic Information

Item Value
gene id LOC118945340
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11536271 ~ 11560808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040501.1
gtgttagttcacgttacgggactgtttcgtcttCGTTCATTtttgtcggtttgttgtttttgttcattgTTTAAGTTTCCTATTAAATATGGATAAtcatcacgctgcattttggtcctcctctctttcacccgaaGACAATCGTGACAAACCCTTTTACCCTCGTCTTCCGCAATTGTTCCTCAGCTGTGGAGAAATAGCTTTTTGAGAACAATAAACGCTTCCTGCAGCGAGTTAGGCTGCTCGGCAGTGGGGCGCTGAATGGGAAAATACATAAGGAGGAAGAGTATTTGGGTTTTGCCACCCTCCCCAACCAGGTCCACAGGAAGTCAGTGAAGAAGGGGTTTGACTTTACCCTCATGGTGTTAGTCTACTACAGCCTGttccacacagacctacacaAGTAAAGGAAACTACTCAACGCTGAGGGTGAGGTGTTACTGTTCCTCTCAGAGCATAtcaccagccaggtcacccgtgatacaagtcagtattccacgtccatccatgtctgaggacgttgggagatgatgtggaaaccggccactaggggcaacggtgaGCACTGtaaccttcaagtaggtttcggttttgctaggGCATGGTGGACAGGGATGGCAGACGGCAATAAGCATCATCCTCTGATTCCAAAAGGTGCAAGTTCAAATCACACAATAGAAAGTTGATTTAGATTTTTAAAATCAAGCCTATTCCAAACCTTCCCCCACATCTCAACCATATGGACTTCATGCCTAAACTTTCAACTTGAACATTAAACACATct
>XR_005040502.1
gtgttagttcacgttacgggactgtttcgtcttCGTTCATTtttgtcggtttgttgtttttgttcattgTTTAAGTTTCCTATTAAATATGGATAAtcatcacgctgcattttggtcctcctctctttcacccgaaGACAATCGTGACAAACCCTTTTACCCTCGTCTTCCGCAATTGTTCCTCAGCTGTGGAGAAATAGCTTTTTGAGAACAATAAACGCTTCCTGCAGCGAGTTAGGCTGCTCGGCAGTGGGGCGCTGAATGGGAAAATACATAAGGAGGAAGAGTATTTGGGTTTTGCCACCCTCCCCAACCAGGTCCACAGGAAGTCAGTGAAGAAGGGGTTTGACTTTACCCTCATGGTGTTAGttgTAGAGGATGCAGGAGATGCTTCAGAAGATGCAACATGAGCAGGTCCTGTGAGCGCTGATCCTTTACCTTTCACCCCAGAGCTTCCACCTCGCTCCTCTCACCTAATGAGGAGTATCACAGGGTCAATCACATGCTGGCCAATCACACACTGCCACCTGACCACTGTCTCTTAATCGTAAACATTCATTGgagttctatacagtacagttctGTTTGAACTTTCTGTAATTGTTACTCCCTCTTCTGAATATGTTCATGTCTCCAATCACTAACAGAGGAACTGGACACGTGGTAAAACCAACACTAAACACTCTCCAAACCGTGGACATTATAGGTCGGCCACACCCTACATTGGAGTCTGACTTTTAAACAGGGTCAAGCATTTTGTCAATGTTTTGTTGGTGTTGTGAAAAACCAAGAAACAACGCTCTGTTGGATACCGTTAGAAGCCAAGACTGTAGCCAAGCTTTGTAGCGCTGTAGTAGATTTGCACCTTAGATTGCAGTTGATGTCCGAGCCCCTTTTTGTGTATTCAAGGAAAGTTATTTAGTACTTAATAAGACTGTTTATGATTATGGTTGAATATGTATTTTGCACTCTACCTGATCACACAGTTAGAATGTTGGCCAGATTAATTTATTCTGTTTCTAACATTGTGTTCcatgttatttattttaatcGATGGCATCTTTGAATGAGTAAAAGTGAGCATGTGAAATTgtgagtgtacgtgtgtgtgtgtttatagttgtggtgtgtgtgagagaaatagagagaacgTGTCTCTATGTCAGAAACGTAGACCACAGTGCCATTTCCTGTCTGACAGAAGTTATGAAACGAACCAAAGTTTTAAGCGAGACTAAATATGCAATTTCCTTTTAGTCCATTGACAGACGGAGGCTTTCTAAAGCACCACTTCTGTCTACGAGGGCTCTCTTACGGAACCGGGGCAAAGTGTTACAGCACAATCAATACTCTGACAGTCTACTTTAGATTACATTAGATAAAGAATCATTAGATCAAACTCAAATGAAAAACTTTATAGGACCAGAACCCATCCACTTGACAAGATTGCATTACAccctttaagtgtgtgtgtgtgtg

Function

NR:

description
hypothetical protein Z043_123204, partial

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040501.1 False 784 mRNA 0.45 3 11536271 11558766
XR_005040502.1 True 1479 mRNA 0.42 3 11536271 11560808

Neighbor

gene id symbol gene type direction distance location
LOC110509620 LOC106563087 coding upstream 71689 11459925 ~ 11464582 (+)
LOC110509623 crybb1 coding upstream 77296 11446394 ~ 11458975 (+)
trnaa-ugc-223 NA coding upstream 196901 11339299 ~ 11339370 (+)
LOC110509616 LOC106563016 coding upstream 222297 11310457 ~ 11313974 (+)
LOC118945263 NA coding upstream 307650 11225076 ~ 11228621 (+)
LOC118945334 NA coding downstream 104 11560912 ~ 11570700 (+)
LOC110509626 LOC106563084 coding downstream 25724 11586532 ~ 11634525 (+)
arrdc3b LOC106563080 coding downstream 124542 11685350 ~ 11693079 (+)
cetn3 LOC106563079 coding downstream 155876 11716684 ~ 11720313 (+)
mef2ca LOC106563077 coding downstream 185250 11742203 ~ 11834606 (+)
G2151603 jelt non-coding upstream 68317 11464844 ~ 11467954 (+)
G2151577 NA non-coding upstream 98453 11425872 ~ 11437818 (+)
G2151555 NA non-coding upstream 104019 11359557 ~ 11432252 (+)
G2151568 NA non-coding upstream 123870 11411930 ~ 11412401 (+)
G2151557 NA non-coding upstream 137027 11359182 ~ 11399244 (+)
G2151723 NA non-coding downstream 161157 11721965 ~ 11722354 (+)
G2151724 NA non-coding downstream 162588 11723396 ~ 11723678 (+)
G2151725 NA non-coding downstream 163100 11723908 ~ 11724149 (+)
G2151726 NA non-coding downstream 163530 11724338 ~ 11724554 (+)
G2151728 NA non-coding downstream 165997 11726805 ~ 11727076 (+)
G2150729 NA other upstream 1074051 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1227192 10064167 ~ 10309768 (+)
G2149183 NA other upstream 2161759 9374000 ~ 9374512 (+)
LOC118945282 NA other upstream 2503976 8957803 ~ 9032295 (+)
G2152150 NA other downstream 203416 11764224 ~ 11766351 (+)
G2152639 NA other downstream 739984 12300792 ~ 12307438 (+)
G2153316 NA other downstream 1199072 12759880 ~ 12760490 (+)
G2154294 NA other downstream 2107481 13668289 ~ 13669170 (+)
G2154391 NA other downstream 2211900 13772708 ~ 13776134 (+)

Expression


Co-expression Network